Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48503 * 109.47375 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46597 * 299.99411 * 3 2 1 6 6 H 1.48498 * 109.47399 * 59.99394 * 3 2 1 7 7 C 1.38826 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99878 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.76199 * 99.99964 * 185.11821 * 9 7 2 11 11 C 1.39393 * 119.94607 * 85.49335 * 10 9 7 12 12 C 1.37078 * 120.05712 * 179.97438 * 11 10 9 13 13 C 1.39850 * 119.94075 * 0.02562 * 12 11 10 14 14 C 1.47515 * 120.05237 * 179.97438 * 13 12 11 15 15 N 1.34777 * 119.99881 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00179 * 0.02562 * 14 13 12 17 17 C 1.39853 * 119.89462 * 0.25424 * 13 12 11 18 18 C 1.37083 * 119.93864 * 359.50749 * 17 13 12 19 19 H 0.96997 * 119.99861 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.97098 * 359.97438 * 11 10 9 21 21 H 1.07997 * 120.02805 * 179.97438 * 12 11 10 22 22 H 0.96996 * 120.00387 * 359.97438 * 15 14 13 23 23 H 0.97009 * 119.99675 * 179.72820 * 15 14 13 24 24 H 1.08003 * 120.03244 * 179.72213 * 17 13 12 25 25 H 1.07997 * 119.97010 * 180.22777 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3962 -1.2126 6 1 1.8907 2.3965 1.2124 7 6 2.0096 -1.2023 0.0005 8 1 3.0896 -1.2023 0.0010 9 16 1.1286 -2.7283 0.0005 10 6 2.4723 -3.8573 0.1561 11 6 2.9704 -4.1765 1.4183 12 6 4.0154 -5.0550 1.5420 13 6 4.5821 -5.6308 0.4004 14 6 5.7071 -6.5761 0.5307 15 7 6.2527 -7.1299 -0.5702 16 8 6.1421 -6.8556 1.6313 17 6 4.0844 -5.3045 -0.8651 18 6 3.0361 -4.4291 -0.9832 19 1 -0.4850 0.8400 -0.0004 20 1 2.5326 -3.7312 2.2995 21 1 4.4012 -5.3017 2.5201 22 1 5.9055 -6.9073 -1.4481 23 1 6.9951 -7.7485 -0.4848 24 1 4.5233 -5.7444 -1.7485 25 1 2.6490 -4.1796 -1.9601 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306280102.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -46.604432 kcal Electronic energy + Delta-G solvation = -12110.741623 eV Core-core repulsion = 9792.861135 eV Total energy + Delta-G solvation = -2317.880488 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.05372 -39.05519 -34.90950 -34.65450 -32.04623 -31.82871 -27.74812 -25.24527 -23.52512 -21.69669 -19.95758 -19.21896 -17.86031 -17.53514 -16.92202 -16.09361 -15.84371 -15.63962 -15.27577 -14.75298 -14.38953 -13.88579 -13.70097 -13.15623 -12.97413 -12.59670 -12.13011 -11.79607 -11.27364 -11.22585 -10.79886 -10.70087 -10.03106 -9.68958 -8.80552 -8.39139 -6.18930 -0.35470 0.43085 1.30771 1.38158 1.47838 1.63425 1.79525 2.24657 2.52043 2.80693 2.94637 3.41665 3.80757 3.87941 4.00928 4.41372 4.49813 4.63768 5.01431 5.16571 5.26204 5.40148 5.50035 5.79815 5.88378 6.16819 6.38640 7.01831 7.26309 8.67997 Molecular weight = 223.04amu Principal moments of inertia in cm(-1) A = 0.046940 B = 0.006483 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.363386 B = 4317.806818 C = 4475.461394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.069 0.931 9 S -0.091 6.091 10 C -0.091 4.091 11 C -0.104 4.104 12 C -0.072 4.072 13 C -0.148 4.148 14 C 0.569 3.431 15 N -0.825 5.825 16 O -0.587 6.587 17 C -0.073 4.073 18 C -0.099 4.099 19 H 0.274 0.726 20 H 0.124 0.876 21 H 0.137 0.863 22 H 0.418 0.582 23 H 0.415 0.585 24 H 0.174 0.826 25 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -10.194 -4.447 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.183 4.183 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.088 0.912 9 S 0.144 5.856 10 C -0.202 4.202 11 C -0.125 4.125 12 C -0.093 4.093 13 C -0.151 4.151 14 C 0.355 3.645 15 N -0.389 5.389 16 O -0.469 6.469 17 C -0.093 4.093 18 C -0.119 4.119 19 H 0.083 0.917 20 H 0.142 0.858 21 H 0.154 0.846 22 H 0.250 0.750 23 H 0.248 0.752 24 H 0.191 0.809 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.691 -10.325 -3.806 14.022 hybrid contribution 1.420 1.138 0.007 1.820 sum 10.111 -9.186 -3.799 14.179 Atomic orbital electron populations 1.70074 1.07521 1.28803 1.47664 1.25980 0.96000 1.02770 0.93593 0.84992 0.78348 0.76778 0.78435 1.19016 1.19351 1.19714 1.23111 0.94714 0.91357 1.59175 0.91244 1.83503 1.08144 0.98463 1.95494 1.22985 1.00920 1.00112 0.96211 1.21539 0.96472 0.97413 0.97085 1.21198 0.94352 0.94540 0.99207 1.20077 0.98942 1.01267 0.94832 1.18161 0.82001 0.79808 0.84500 1.43509 1.38174 1.48423 1.08844 1.90793 1.64302 1.63854 1.27917 1.21481 0.94965 0.95957 0.96870 1.21655 0.95720 0.96332 0.98227 0.91653 0.85802 0.84567 0.74958 0.75212 0.80851 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.66 13.22 21.65 0.29 -52.37 15 2 C 0.02 1.22 5.49 84.88 0.47 1.69 15 3 Si 0.99 43.01 29.55 68.60 2.03 45.03 15 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 7 C -0.54 -30.14 9.47 67.96 0.64 -29.50 15 8 H 0.07 3.87 7.79 -2.91 -0.02 3.85 15 9 S -0.09 -4.70 21.41 -56.49 -1.21 -5.91 15 10 C -0.09 -3.79 5.47 22.82 0.12 -3.66 15 11 C -0.10 -4.03 9.76 22.28 0.22 -3.81 15 12 C -0.07 -2.42 9.56 22.39 0.21 -2.21 15 13 C -0.15 -4.23 5.88 -20.05 -0.12 -4.35 15 14 C 0.57 14.82 8.03 86.69 0.70 15.52 15 15 N -0.82 -12.11 8.82 -175.81 -1.55 -13.66 15 16 O -0.59 -20.06 17.17 -4.05 -0.07 -20.13 15 17 C -0.07 -1.82 9.51 22.39 0.21 -1.61 15 18 C -0.10 -3.30 9.76 22.27 0.22 -3.08 15 19 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 20 H 0.12 4.87 8.06 -2.91 -0.02 4.84 15 21 H 0.14 4.35 7.64 -2.91 -0.02 4.33 15 22 H 0.42 3.49 6.85 -92.71 -0.63 2.86 15 23 H 0.42 4.62 8.93 -92.70 -0.83 3.79 15 24 H 0.17 2.42 6.39 -2.91 -0.02 2.40 15 25 H 0.14 4.42 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -71.11 246.45 1.94 -69.18 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -0.22 Total: 8.86 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 2.67 Total: -31.01 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.27 Total: -66.03 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.13 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.21 Total: -5.91 kcal Total: -71.11 1.94 -69.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306280102.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.572 kcal (2) G-P(sol) polarization free energy of solvation -71.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds