Wall clock time and date at job start Mon Mar 30 2020 03:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47133 * 179.72210 * 3 2 1 5 5 H 1.48497 * 109.46906 * 299.72235 * 3 2 1 6 6 H 1.48504 * 109.47350 * 59.72529 * 3 2 1 7 7 C 1.38895 * 120.00092 * 179.71847 * 2 1 3 8 8 H 1.07993 * 120.00210 * 155.08979 * 7 2 1 9 9 N 1.37425 * 119.99866 * 335.10120 * 7 2 1 10 10 C 1.34056 * 123.74451 * 325.66650 * 9 7 2 11 11 O 1.21590 * 125.61169 * 0.02562 * 10 9 7 12 12 C 1.47899 * 108.78100 * 179.88278 * 10 9 7 13 13 C 1.34939 * 143.12784 * 180.02562 * 12 10 9 14 14 S 1.70116 * 111.47201 * 180.34401 * 13 12 10 15 15 C 1.70109 * 93.23399 * 359.97438 * 14 13 12 16 16 C 1.34932 * 111.47761 * 0.02562 * 15 14 13 17 17 C 1.34063 * 123.74751 * 145.96841 * 9 7 2 18 18 O 1.21604 * 125.60755 * 359.97223 * 17 9 7 19 19 H 0.97000 * 120.00153 * 174.84775 * 1 2 3 20 20 H 1.07996 * 124.26040 * 0.36325 * 13 12 10 21 21 H 1.08004 * 124.25836 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 0.0068 5 1 1.8944 2.3934 -1.2159 6 1 1.8843 2.3994 1.2091 7 6 2.0085 -1.2028 0.0059 8 1 3.0131 -1.2483 -0.3878 9 7 1.4172 -2.3352 0.5126 10 6 0.5659 -2.3310 1.5481 11 8 0.2081 -1.3472 2.1666 12 6 0.1307 -3.7196 1.8123 13 6 -0.6492 -4.4719 2.6164 14 16 -0.5582 -6.1206 2.2072 15 6 0.5371 -5.8435 0.9354 16 6 0.8339 -4.5327 0.8159 17 6 1.6321 -3.5673 0.0298 18 8 2.3628 -3.8453 -0.9016 19 1 -0.4850 -0.8366 -0.0754 20 1 -1.2552 -4.0770 3.4184 21 1 0.9442 -6.6192 0.3038 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306333464.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:47 Heat of formation + Delta-G solvation = -8.015994 kcal Electronic energy + Delta-G solvation = -12843.150462 eV Core-core repulsion = 10391.110200 eV Total energy + Delta-G solvation = -2452.040262 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.009 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.15446 -37.31252 -36.44491 -34.60112 -32.23110 -29.38951 -27.13321 -23.56116 -23.45700 -19.79744 -19.37701 -18.16029 -16.98319 -15.76952 -15.70155 -15.46141 -14.32174 -13.78916 -13.69234 -12.87398 -12.80121 -12.77698 -12.33935 -11.84274 -11.43035 -10.96087 -10.34394 -10.23352 -9.61176 -9.26250 -9.18876 -8.95947 -8.39736 -8.21853 -6.87755 -4.34966 0.96980 1.34530 1.61514 1.84756 3.30229 3.36522 3.50096 3.51354 3.84771 4.19570 4.38720 4.62043 4.84296 5.11206 5.34685 5.64799 5.89395 5.91477 6.31955 7.46063 7.54309 8.16063 8.25615 8.45403 9.01660 9.36287 10.43781 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.051909 B = 0.009870 C = 0.008620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.272181 B = 2836.319643 C = 3247.508055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.032 3.968 3 Si 1.092 2.908 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.444 4.444 8 H 0.103 0.897 9 N -0.394 5.394 10 C 0.542 3.458 11 O -0.464 6.464 12 C -0.161 4.161 13 C -0.199 4.199 14 S 0.242 5.758 15 C -0.197 4.197 16 C -0.167 4.167 17 C 0.555 3.445 18 O -0.500 6.500 19 H 0.274 0.726 20 H 0.174 0.826 21 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.915 -10.047 4.615 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.182 4.182 3 Si 0.916 3.084 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.121 0.879 9 N -0.122 5.122 10 C 0.329 3.671 11 O -0.338 6.338 12 C -0.177 4.177 13 C -0.336 4.336 14 S 0.509 5.491 15 C -0.334 4.334 16 C -0.184 4.184 17 C 0.343 3.657 18 O -0.377 6.377 19 H 0.085 0.915 20 H 0.191 0.809 21 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.606 -9.281 5.090 10.901 hybrid contribution 0.746 -0.499 -0.677 1.125 sum -1.860 -9.780 4.412 10.889 Atomic orbital electron populations 1.70559 1.07454 1.31530 1.35550 1.26656 0.95834 1.02944 0.92801 0.83204 0.74648 0.73022 0.77529 1.20512 1.20792 1.20247 1.20458 1.01935 0.85860 1.48565 0.87921 1.41972 1.37708 1.07718 1.24784 1.17772 0.82013 0.86512 0.80785 1.90763 1.55396 1.38069 1.49526 1.21726 1.00490 0.97343 0.98170 1.24590 1.04955 0.98704 1.05398 1.81609 1.39955 1.03249 1.24255 1.24607 1.04927 0.98950 1.04962 1.21700 1.02856 0.93238 1.00620 1.17890 0.82319 0.82946 0.82518 1.90666 1.37689 1.81884 1.27495 0.91495 0.80869 0.80886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.56 12.17 55.49 0.68 -23.89 14 2 C 0.03 0.91 4.57 -17.49 -0.08 0.83 14 3 Si 1.09 24.59 29.99 -169.99 -5.10 19.50 14 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 14 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.44 -12.77 9.38 -14.80 -0.14 -12.91 14 8 H 0.10 2.93 7.95 -52.49 -0.42 2.52 14 9 N -0.39 -10.78 2.49 -62.85 -0.16 -10.94 14 10 C 0.54 14.12 6.65 -12.63 -0.08 14.03 14 11 O -0.46 -13.27 15.40 5.29 0.08 -13.19 14 12 C -0.16 -3.35 6.97 -103.75 -0.72 -4.07 14 13 C -0.20 -3.12 10.91 29.56 0.32 -2.80 14 14 S 0.24 2.85 22.76 -107.50 -2.45 0.41 14 15 C -0.20 -3.00 10.91 29.56 0.32 -2.68 14 16 C -0.17 -3.42 6.97 -103.76 -0.72 -4.14 14 17 C 0.55 14.01 7.94 -12.63 -0.10 13.91 14 18 O -0.50 -13.46 17.72 5.27 0.09 -13.37 14 19 H 0.27 8.36 7.10 -40.82 -0.29 8.07 14 20 H 0.17 2.31 8.06 -52.49 -0.42 1.89 14 21 H 0.17 2.17 8.06 -52.48 -0.42 1.75 14 LS Contribution 217.31 15.07 3.27 3.27 Total: -1.00 -33.66 217.31 -5.13 -38.79 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -0.35 Total: -2.74 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.20 Total: 2.17 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.52 Total: -34.83 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: 0.17 Total: -26.56 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.50 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.45 Total: 0.41 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -33.66 -5.13 -38.79 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306333464.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.770 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds