Wall clock time and date at job start Mon Mar 30 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48492 * 109.47050 * 85.17459 * 3 2 1 5 5 H 1.48503 * 109.46707 * 205.17779 * 3 2 1 6 6 H 1.48498 * 109.46834 * 325.16999 * 3 2 1 7 7 C 1.40053 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00353 * 197.19360 * 7 2 1 9 9 C 1.40716 * 119.99621 * 17.20157 * 7 2 1 10 10 C 1.40824 * 120.70420 * 24.74066 * 9 7 2 11 11 C 1.37592 * 120.03950 * 179.97438 * 10 9 7 12 12 C 1.38516 * 121.43457 * 359.97438 * 11 10 9 13 13 C 1.38610 * 121.01101 * 0.02562 * 12 11 10 14 14 O 1.35211 * 133.95508 * 179.97438 * 13 12 11 15 15 C 1.34220 * 107.95488 * 179.28286 * 14 13 12 16 16 Cl 1.73606 * 124.95955 * 180.08531 * 15 14 13 17 17 N 1.30461 * 110.07480 * 0.61014 * 15 14 13 18 18 C 1.34569 * 108.92198 * 359.47741 * 17 15 14 19 19 H 0.97008 * 119.99375 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.97921 * 0.02562 * 10 9 7 21 21 H 1.07994 * 119.27849 * 180.02562 * 11 10 9 22 22 H 1.08000 * 119.49502 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3876 2.1053 1.3950 5 1 3.5869 1.4128 -0.5957 6 1 1.4943 2.6210 -0.7996 7 6 2.0083 -1.2129 0.0005 8 1 3.0521 -1.2338 0.2770 9 6 1.3518 -2.4044 -0.3593 10 6 0.2151 -2.3764 -1.1902 11 6 -0.4159 -3.5497 -1.5339 12 6 0.0417 -4.7758 -1.0801 13 6 1.1557 -4.8633 -0.2600 14 8 1.8146 -5.8909 0.3216 15 6 2.8511 -5.3830 1.0066 16 17 3.9933 -6.3178 1.9205 17 7 2.8683 -4.0833 0.8944 18 6 1.8403 -3.6989 0.1157 19 1 -0.4849 0.8402 -0.0004 20 1 -0.1610 -1.4333 -1.5584 21 1 -1.2863 -3.5140 -2.1721 22 1 -0.4775 -5.6775 -1.3697 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306513948.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:04 Heat of formation + Delta-G solvation = 24.691595 kcal Electronic energy + Delta-G solvation = -12432.889119 eV Core-core repulsion = 9980.223458 eV Total energy + Delta-G solvation = -2452.665661 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.92275 -36.79655 -36.45633 -33.89910 -33.55825 -29.73659 -28.34331 -25.46105 -22.45334 -21.60504 -20.51928 -17.80312 -16.91307 -16.09567 -15.78265 -15.45765 -14.71286 -13.38478 -13.05926 -12.77873 -12.05367 -11.89662 -11.69550 -11.35072 -11.20630 -10.95556 -10.68193 -10.39989 -10.19691 -10.06461 -9.49979 -9.32272 -7.62319 -7.40069 -7.15741 -4.65530 1.56004 1.86781 2.62467 2.89046 2.93252 3.00852 3.52499 3.65288 4.11563 4.25037 5.29678 5.82136 5.98442 6.20286 6.38003 6.62484 6.74449 7.06580 7.13026 7.42914 7.49444 7.74259 7.87132 8.16433 8.36319 8.40689 8.79065 9.68068 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.009287 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.341439 B = 3014.111826 C = 3798.870060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.068 3.932 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.254 1.254 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.095 0.905 9 C 0.169 3.831 10 C -0.208 4.208 11 C -0.041 4.041 12 C -0.263 4.263 13 C 0.071 3.929 14 O -0.222 6.222 15 C 0.159 3.841 16 Cl 0.048 6.952 17 N -0.403 5.403 18 C -0.084 4.084 19 H 0.292 0.708 20 H 0.130 0.870 21 H 0.106 0.894 22 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -1.941 -0.179 2.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.156 4.156 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.177 1.177 6 H -0.194 1.194 7 C -0.423 4.423 8 H 0.113 0.887 9 C 0.164 3.836 10 C -0.228 4.228 11 C -0.060 4.060 12 C -0.284 4.284 13 C 0.021 3.979 14 O -0.116 6.116 15 C -0.072 4.072 16 Cl 0.076 6.924 17 N -0.135 5.135 18 C -0.202 4.202 19 H 0.103 0.897 20 H 0.148 0.852 21 H 0.124 0.876 22 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.141 -1.502 0.217 2.624 hybrid contribution -0.078 -0.096 -0.014 0.124 sum 2.063 -1.597 0.203 2.617 Atomic orbital electron populations 1.69821 1.08019 1.30703 1.29041 1.26250 0.94983 1.02407 0.91927 0.86032 0.80838 0.78929 0.79704 1.18887 1.17721 1.19441 1.19890 0.98653 0.90484 1.33248 0.88659 1.17813 0.90292 0.87701 0.87789 1.21053 1.00202 0.97426 1.04164 1.20403 0.97253 0.91526 0.96788 1.18805 1.00534 0.97741 1.11301 1.20129 0.96046 0.84341 0.97378 1.84247 1.36033 1.36313 1.55032 1.24847 0.92138 0.86764 1.03471 1.98363 1.53204 1.71364 1.69486 1.69690 1.21115 1.07459 1.15231 1.20590 0.97404 0.95387 1.06821 0.89703 0.85196 0.87571 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.53 10.96 55.55 0.61 -16.92 14 2 C 0.07 1.55 5.16 -17.31 -0.09 1.46 14 3 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 5 H -0.25 -4.70 7.11 56.52 0.40 -4.30 14 6 H -0.27 -4.76 7.11 56.52 0.40 -4.35 14 7 C -0.40 -10.07 9.09 -37.97 -0.35 -10.41 14 8 H 0.10 2.41 7.90 -52.49 -0.41 1.99 14 9 C 0.17 4.44 5.73 -104.75 -0.60 3.84 14 10 C -0.21 -5.09 8.70 -38.84 -0.34 -5.43 14 11 C -0.04 -0.91 9.95 -39.71 -0.40 -1.30 14 12 C -0.26 -6.05 10.02 -39.34 -0.39 -6.45 14 13 C 0.07 1.78 7.43 -38.71 -0.29 1.50 14 14 O -0.22 -5.29 10.79 3.37 0.04 -5.25 14 15 C 0.16 3.62 8.95 52.18 0.47 4.08 14 16 Cl 0.05 0.84 29.33 -51.86 -1.52 -0.69 14 17 N -0.40 -10.27 11.29 -8.14 -0.09 -10.36 14 18 C -0.08 -2.23 7.21 -82.69 -0.60 -2.82 14 19 H 0.29 5.99 8.30 -40.82 -0.34 5.65 14 20 H 0.13 3.13 6.18 -52.49 -0.32 2.80 14 21 H 0.11 1.98 8.06 -52.49 -0.42 1.56 14 22 H 0.10 2.03 8.06 -52.49 -0.42 1.61 14 LS Contribution 224.01 15.07 3.38 3.38 Total: -1.00 -26.97 224.01 -5.92 -32.89 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -0.72 Total: 0.51 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.58 Total: -15.53 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.52 Total: -27.29 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.04 Total: -5.25 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -1.52 Total: -0.69 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -26.97 -5.92 -32.89 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513948.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.585 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds