Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48492 * 109.47050 * 85.17459 * 3 2 1 5 5 H 1.48503 * 109.46707 * 205.17779 * 3 2 1 6 6 H 1.48498 * 109.46834 * 325.16999 * 3 2 1 7 7 C 1.40053 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00353 * 197.19360 * 7 2 1 9 9 C 1.40716 * 119.99621 * 17.20157 * 7 2 1 10 10 C 1.40824 * 120.70420 * 24.74066 * 9 7 2 11 11 C 1.37592 * 120.03950 * 179.97438 * 10 9 7 12 12 C 1.38516 * 121.43457 * 359.97438 * 11 10 9 13 13 C 1.38610 * 121.01101 * 0.02562 * 12 11 10 14 14 O 1.35211 * 133.95508 * 179.97438 * 13 12 11 15 15 C 1.34220 * 107.95488 * 179.28286 * 14 13 12 16 16 Cl 1.73606 * 124.95955 * 180.08531 * 15 14 13 17 17 N 1.30461 * 110.07480 * 0.61014 * 15 14 13 18 18 C 1.34569 * 108.92198 * 359.47741 * 17 15 14 19 19 H 0.97008 * 119.99375 * 0.02562 * 1 2 3 20 20 H 1.08002 * 119.97921 * 0.02562 * 10 9 7 21 21 H 1.07994 * 119.27849 * 180.02562 * 11 10 9 22 22 H 1.08000 * 119.49502 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3876 2.1053 1.3950 5 1 3.5869 1.4128 -0.5957 6 1 1.4943 2.6210 -0.7996 7 6 2.0083 -1.2129 0.0005 8 1 3.0521 -1.2338 0.2770 9 6 1.3518 -2.4044 -0.3593 10 6 0.2151 -2.3764 -1.1902 11 6 -0.4159 -3.5497 -1.5339 12 6 0.0417 -4.7758 -1.0801 13 6 1.1557 -4.8633 -0.2600 14 8 1.8146 -5.8909 0.3216 15 6 2.8511 -5.3830 1.0066 16 17 3.9933 -6.3178 1.9205 17 7 2.8683 -4.0833 0.8944 18 6 1.8403 -3.6989 0.1157 19 1 -0.4849 0.8402 -0.0004 20 1 -0.1610 -1.4333 -1.5584 21 1 -1.2863 -3.5140 -2.1721 22 1 -0.4775 -5.6775 -1.3697 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306513948.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = 7.277123 kcal Electronic energy + Delta-G solvation = -12433.644267 eV Core-core repulsion = 9980.223458 eV Total energy + Delta-G solvation = -2453.420809 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.014 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.77142 -38.53163 -38.13757 -35.67320 -35.42457 -31.57170 -30.18667 -27.29582 -24.28319 -23.45635 -22.36067 -19.61874 -18.70451 -17.94510 -17.64698 -17.17234 -16.39700 -15.15481 -14.72748 -14.57430 -13.75843 -13.54104 -13.43257 -12.93437 -12.83688 -12.66039 -12.33090 -12.12968 -11.93601 -11.84673 -11.21124 -11.16464 -9.49469 -9.21569 -8.90363 -6.52545 -0.14921 0.06251 0.81613 1.37259 1.43929 1.54291 1.68531 2.13261 2.28374 2.48858 3.41940 3.99439 4.14527 4.49972 4.57146 4.84205 4.96910 5.22095 5.29717 5.57604 5.66396 5.91527 6.03884 6.31614 6.52647 6.55078 6.92251 8.00282 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.032500 B = 0.009287 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.341439 B = 3014.111826 C = 3798.870060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.036 3.964 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.251 1.251 7 C -0.429 4.429 8 H 0.082 0.918 9 C 0.138 3.862 10 C -0.223 4.223 11 C -0.036 4.036 12 C -0.262 4.262 13 C 0.048 3.952 14 O -0.223 6.223 15 C 0.168 3.832 16 Cl 0.099 6.901 17 N -0.435 5.435 18 C -0.121 4.121 19 H 0.305 0.695 20 H 0.129 0.871 21 H 0.147 0.853 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -1.818 -0.366 2.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.182 1.182 6 H -0.174 1.174 7 C -0.455 4.455 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.243 4.243 11 C -0.054 4.054 12 C -0.282 4.282 13 C -0.001 4.001 14 O -0.117 6.117 15 C -0.064 4.064 16 Cl 0.126 6.874 17 N -0.167 5.167 18 C -0.237 4.237 19 H 0.117 0.883 20 H 0.147 0.853 21 H 0.165 0.835 22 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.893 -1.389 0.023 2.348 hybrid contribution 0.027 -0.290 0.110 0.312 sum 1.920 -1.679 0.133 2.554 Atomic orbital electron populations 1.69798 1.09110 1.32468 1.28491 1.27030 0.95748 1.04908 0.90880 0.84998 0.79196 0.74610 0.79937 1.18445 1.18246 1.17407 1.20017 0.98411 0.91868 1.35219 0.90031 1.18238 0.91469 0.88201 0.88747 1.21155 1.00334 0.98351 1.04453 1.20812 0.97834 0.90445 0.96328 1.19255 0.99699 0.99156 1.10063 1.20534 0.96974 0.84251 0.98370 1.84246 1.36291 1.35989 1.55182 1.25529 0.91874 0.86944 1.02093 1.98381 1.51093 1.69920 1.67994 1.69656 1.21760 1.08873 1.16391 1.20908 0.98514 0.96229 1.08073 0.88309 0.85323 0.83548 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.99 10.96 21.85 0.24 -35.75 14 2 C 0.04 1.64 5.16 85.29 0.44 2.08 14 3 Si 0.99 34.44 29.59 68.60 2.03 36.47 14 4 H -0.26 -8.78 7.11 99.48 0.71 -8.08 14 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 6 H -0.25 -7.85 7.11 99.48 0.71 -7.15 14 7 C -0.43 -22.48 9.09 23.32 0.21 -22.27 14 8 H 0.08 4.32 7.90 -2.91 -0.02 4.30 14 9 C 0.14 7.46 5.73 -19.95 -0.11 7.35 14 10 C -0.22 -10.94 8.70 22.75 0.20 -10.75 14 11 C -0.04 -1.54 9.95 22.18 0.22 -1.32 14 12 C -0.26 -11.66 10.02 22.42 0.22 -11.44 14 13 C 0.05 2.43 7.43 22.84 0.17 2.60 14 14 O -0.22 -10.49 10.79 -10.87 -0.12 -10.60 14 15 C 0.17 7.58 8.95 130.45 1.17 8.74 14 16 Cl 0.10 3.24 29.33 -2.72 -0.08 3.16 14 17 N -0.43 -22.53 11.29 -294.23 -3.32 -25.85 14 18 C -0.12 -6.54 7.21 41.30 0.30 -6.25 14 19 H 0.31 12.26 8.30 -92.70 -0.77 11.49 14 20 H 0.13 6.23 6.18 -2.91 -0.02 6.21 14 21 H 0.15 5.01 8.06 -2.91 -0.02 4.99 14 22 H 0.13 4.88 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -58.40 224.01 2.83 -55.57 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.26 Total: 8.25 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.82 Total: -31.24 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -3.08 Total: -61.60 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.12 Total: -10.60 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Atomic # 17 Polarization: 3.24 SS G_CDS: -0.08 Total: 3.16 kcal Total: -58.40 2.83 -55.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306513948.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.845 kcal (2) G-P(sol) polarization free energy of solvation -58.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds