Wall clock time and date at job start Mon Mar 30 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86801 * 120.00371 * 2 1 4 4 H 1.48493 * 109.47109 * 240.00154 * 3 2 1 5 5 H 1.48501 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46735 * 120.00024 * 3 2 1 7 7 C 1.38795 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99867 * 187.10277 * 7 2 1 9 9 N 1.36852 * 120.00373 * 7.10176 * 7 2 1 10 10 C 1.46526 * 124.91478 * 354.23733 * 9 7 2 11 11 C 1.53762 * 105.18984 * 179.97438 * 10 9 7 12 12 C 1.51227 * 104.47440 * 359.97438 * 11 10 9 13 13 C 1.38120 * 131.01327 * 179.97438 * 12 11 10 14 14 C 1.38258 * 120.17365 * 179.69083 * 13 12 11 15 15 C 1.38459 * 119.84808 * 0.60536 * 14 13 12 16 16 Cl 1.73599 * 119.89013 * 179.70821 * 15 14 13 17 17 C 1.37892 * 120.22414 * 359.43898 * 15 14 13 18 18 C 1.38785 * 108.49200 * 0.02562 * 12 11 10 19 19 H 0.97008 * 119.99834 * 4.99922 * 1 2 3 20 20 H 1.09002 * 110.30218 * 61.07018 * 10 9 7 21 21 H 1.09004 * 110.30386 * 298.92554 * 10 9 7 22 22 H 1.08994 * 110.43212 * 241.25188 * 11 10 9 23 23 H 1.08997 * 110.42892 * 118.74837 * 11 10 9 24 24 H 1.07998 * 119.90839 * 0.02562 * 13 12 11 25 25 H 1.08006 * 120.07344 * 180.34110 * 14 13 12 26 26 H 1.08001 * 119.87195 * 180.27181 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.1037 1.6963 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6962 1.2125 7 6 2.0098 -1.2020 -0.0005 8 1 3.0836 -1.2057 0.1151 9 7 1.3334 -2.3826 -0.1476 10 6 -0.1253 -2.5135 -0.1916 11 6 -0.3896 -4.0180 -0.3677 12 6 0.9876 -4.6412 -0.4116 13 6 1.3830 -5.9570 -0.5529 14 6 2.7270 -6.2807 -0.5700 15 6 3.6778 -5.2837 -0.4324 16 17 5.3656 -5.6898 -0.4461 17 6 3.2888 -3.9684 -0.2901 18 6 1.9316 -3.6326 -0.2779 19 1 -0.4850 0.8369 -0.0732 20 1 -0.5296 -1.9574 -1.0375 21 1 -0.5652 -2.1585 0.7404 22 1 -0.9211 -4.2043 -1.3009 23 1 -0.9567 -4.4062 0.4783 24 1 0.6404 -6.7344 -0.6556 25 1 3.0345 -7.3096 -0.6860 26 1 4.0353 -3.1947 -0.1877 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306526708.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:32 Heat of formation + Delta-G solvation = 14.435612 kcal Electronic energy + Delta-G solvation = -12792.119821 eV Core-core repulsion = 10474.842522 eV Total energy + Delta-G solvation = -2317.277299 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 223.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.06246 -37.99660 -36.77767 -34.59049 -32.83547 -30.20029 -29.45241 -26.79018 -23.68474 -22.44136 -21.99608 -19.32402 -17.67755 -16.62339 -16.54146 -16.34278 -15.92359 -14.93661 -14.59335 -13.98991 -13.95064 -13.46597 -13.38579 -12.99261 -12.63487 -12.38943 -12.33136 -12.22081 -12.05238 -11.96864 -11.53723 -11.08822 -10.57223 -9.40836 -8.51117 -8.38540 -5.70491 0.55814 0.81813 1.31616 1.38269 1.45046 1.49069 2.21036 2.79945 3.10728 3.18641 3.98600 4.07643 4.34274 4.54021 4.56809 4.68796 4.86992 5.06262 5.17402 5.26017 5.31157 5.35123 5.55345 5.68611 5.74324 5.88927 6.25068 6.60966 7.24368 7.70907 8.64142 Molecular weight = 223.05amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.009333 C = 0.007214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.031571 B = 2999.474252 C = 3880.286787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.017 4.017 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.322 4.322 8 H 0.093 0.907 9 N -0.465 5.465 10 C 0.153 3.847 11 C -0.077 4.077 12 C -0.221 4.221 13 C -0.031 4.031 14 C -0.223 4.223 15 C 0.026 3.974 16 Cl -0.084 7.084 17 C -0.229 4.229 18 C 0.172 3.828 19 H 0.273 0.727 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.152 0.848 25 H 0.144 0.856 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -7.828 -1.092 8.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.217 4.217 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.110 0.890 9 N -0.152 5.152 10 C 0.030 3.970 11 C -0.115 4.115 12 C -0.228 4.228 13 C -0.050 4.050 14 C -0.245 4.245 15 C -0.001 4.001 16 Cl -0.055 7.055 17 C -0.255 4.255 18 C 0.054 3.946 19 H 0.082 0.918 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.506 -7.265 -0.972 7.483 hybrid contribution 0.583 1.252 0.072 1.383 sum 2.089 -6.012 -0.900 6.428 Atomic orbital electron populations 1.70126 1.06760 1.28847 1.48776 1.26091 0.96731 1.02388 0.96515 0.84934 0.77683 0.76376 0.79115 1.19463 1.20005 1.19285 1.19736 0.92901 0.83394 1.48868 0.88951 1.43111 1.05234 1.02586 1.64265 1.21612 0.80402 0.94020 1.00981 1.21149 0.94193 0.93056 1.03078 1.20104 0.94756 0.93701 1.14242 1.20341 0.95423 0.93719 0.95522 1.20584 0.91526 0.98540 1.13889 1.20401 0.84129 0.93509 1.02084 1.98296 1.16290 1.93855 1.97054 1.19798 0.93481 0.95168 1.17043 1.18611 0.93083 0.86503 0.96381 0.91769 0.92866 0.93278 0.89196 0.89221 0.83013 0.83776 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.37 10.28 21.65 0.22 -48.15 15 2 C -0.02 -0.89 5.47 84.86 0.46 -0.43 15 3 Si 1.00 41.33 29.56 68.60 2.03 43.36 15 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 15 5 H -0.28 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.32 -17.48 9.94 84.04 0.84 -16.65 15 8 H 0.09 4.93 7.20 -2.91 -0.02 4.91 15 9 N -0.47 -24.18 3.17 -510.07 -1.62 -25.80 15 10 C 0.15 7.21 5.55 86.63 0.48 7.69 15 11 C -0.08 -2.86 6.94 30.27 0.21 -2.65 15 12 C -0.22 -8.81 6.24 -19.59 -0.12 -8.93 15 13 C -0.03 -1.02 10.03 22.25 0.22 -0.79 15 14 C -0.22 -7.35 9.84 22.33 0.22 -7.13 15 15 C 0.03 0.98 6.31 22.24 0.14 1.12 15 16 Cl -0.08 -2.69 28.94 -2.72 -0.08 -2.77 15 17 C -0.23 -10.13 9.53 22.57 0.22 -9.91 15 18 C 0.17 8.10 6.64 38.49 0.26 8.36 15 19 H 0.27 13.72 8.32 -92.70 -0.77 12.95 15 20 H 0.05 2.67 7.31 -2.39 -0.02 2.65 15 21 H 0.05 2.46 7.57 -2.39 -0.02 2.44 15 22 H 0.09 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.09 2.89 8.14 -2.39 -0.02 2.87 15 24 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 25 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 26 H 0.10 4.55 7.48 -2.91 -0.02 4.53 15 Total: -1.00 -57.25 240.05 4.66 -52.59 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.19 Total: 10.08 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: 2.92 Total: -29.32 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.40 Total: -73.94 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 17 Polarization: -2.69 SS G_CDS: -0.08 Total: -2.77 kcal Total: -57.25 4.66 -52.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306526708.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.028 kcal (2) G-P(sol) polarization free energy of solvation -57.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds