Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47558 * 2 1 4 4 H 1.09000 * 109.46800 * 302.76774 * 3 2 1 5 5 C 1.47203 * 109.47573 * 182.76599 * 3 2 1 6 6 N 3.43557 * 155.06870 * 355.29969 * 2 1 3 7 7 N 1.46899 * 109.47360 * 62.76330 * 3 2 1 8 8 C 1.46839 * 111.00312 * 190.89475 * 7 3 2 9 9 C 1.53035 * 109.52485 * 174.16350 * 8 7 3 10 10 C 1.53125 * 109.28007 * 59.17693 * 9 8 7 11 11 C 1.53116 * 109.15899 * 302.34606 * 10 9 8 12 12 H 1.09000 * 109.50354 * 297.71711 * 11 10 9 13 13 C 1.50701 * 109.50293 * 177.63253 * 11 10 9 14 14 H 1.08001 * 120.00139 * 240.07873 * 13 11 10 15 15 C 1.37877 * 119.99892 * 60.08239 * 13 11 10 16 16 N 1.31516 * 119.99772 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00042 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47367 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47003 * 119.99879 * 17 15 13 20 20 H 1.48496 * 109.47263 * 239.99602 * 17 15 13 21 21 C 1.46851 * 110.99750 * 66.68371 * 7 3 2 22 22 H 1.09008 * 109.46634 * 294.64658 * 1 2 3 23 23 H 1.09000 * 109.47272 * 54.64363 * 1 2 3 24 24 H 1.08996 * 109.47585 * 174.65425 * 1 2 3 25 25 H 1.09002 * 109.46863 * 239.99918 * 2 1 3 26 26 H 1.09001 * 109.47714 * 120.00264 * 2 1 3 27 27 H 1.08998 * 109.46463 * 54.14506 * 8 7 3 28 28 H 1.09003 * 109.46114 * 294.17367 * 8 7 3 29 29 H 1.09003 * 109.50141 * 299.23807 * 9 8 7 30 30 H 1.09000 * 109.50946 * 179.11933 * 9 8 7 31 31 H 1.08995 * 109.52166 * 182.44312 * 10 9 8 32 32 H 1.08991 * 109.51997 * 62.25306 * 10 9 8 33 33 H 0.97001 * 120.00178 * 180.02562 * 16 15 13 34 34 H 1.08998 * 109.46150 * 65.82063 * 21 7 3 35 35 H 1.09006 * 109.46282 * 305.85619 * 21 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6368 1.9704 -0.8641 5 6 3.5105 1.4430 -0.0670 6 7 4.6453 1.4433 -0.1187 7 7 1.6057 2.1155 1.2314 8 6 1.8497 3.5614 1.1550 9 6 1.2553 4.2463 2.3877 10 6 1.9017 3.6666 3.6491 11 6 1.6746 2.1527 3.6798 12 1 0.6055 1.9460 3.7296 13 6 2.3575 1.5659 4.8883 14 1 3.1290 0.8205 4.7638 15 6 1.9972 1.9806 6.1529 16 7 1.0572 2.8879 6.3045 17 14 2.8431 1.2528 7.6508 18 1 3.8554 0.2583 7.2133 19 1 3.5111 2.3355 8.4169 20 1 1.8350 0.5857 8.5133 21 6 2.2569 1.5286 2.4096 22 1 -0.3633 0.4286 0.9341 23 1 -0.3634 0.5947 -0.8381 24 1 -0.3634 -1.0231 -0.0957 25 1 1.8932 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.3813 3.9618 0.2559 28 1 2.9232 3.7472 1.1186 29 1 0.1796 4.0725 2.4174 30 1 1.4502 5.3176 2.3385 31 1 1.4503 4.1206 4.5312 32 1 2.9715 3.8743 3.6384 33 1 0.8040 3.1800 7.1941 34 1 3.3284 1.7238 2.3672 35 1 2.0842 0.4524 2.4216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306771451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = 13.925682 kcal Electronic energy + Delta-G solvation = -15660.983049 eV Core-core repulsion = 13272.359324 eV Total energy + Delta-G solvation = -2388.623725 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.15514 -36.15501 -34.55411 -32.86365 -30.76045 -29.96367 -26.83017 -25.02770 -23.00622 -21.57334 -21.03530 -18.96663 -17.31604 -16.43850 -15.69171 -14.55134 -14.48771 -13.94194 -13.56012 -13.43926 -13.26996 -12.86534 -12.47312 -12.38982 -12.04775 -11.83180 -11.68417 -11.38888 -10.97997 -10.91225 -10.70204 -10.65311 -10.54758 -10.14093 -9.86721 -9.52270 -9.11063 -8.73613 -8.34648 -8.03577 -5.99775 -4.05571 2.91929 2.95252 3.29230 3.37585 3.41722 4.06189 4.33051 4.48070 5.02601 5.15930 5.30663 5.46896 5.58684 5.68407 5.73111 5.89176 5.97871 6.09139 6.17034 6.28713 6.31785 6.44106 6.59607 6.64084 6.70398 6.89104 7.13753 7.28998 7.46101 7.60954 7.72603 7.74759 8.03089 8.13397 8.44516 8.98102 9.59053 11.06236 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.008300 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.617232 B = 3372.819771 C = 3511.805431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.173 3.827 4 H 0.116 0.884 5 C 0.182 3.818 6 N -0.441 5.441 7 N -0.510 5.510 8 C 0.055 3.945 9 C -0.116 4.116 10 C -0.113 4.113 11 C 0.057 3.943 12 H 0.038 0.962 13 C -0.514 4.514 14 H 0.053 0.947 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.058 3.942 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.259 0.741 34 H 0.022 0.978 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -1.391 -11.144 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.060 3.940 4 H 0.133 0.867 5 C -0.138 4.138 6 N -0.118 5.118 7 N -0.233 5.233 8 C -0.072 4.072 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.038 3.962 12 H 0.056 0.944 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.068 4.068 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.838 -1.352 -11.018 11.252 hybrid contribution 1.063 -0.156 0.821 1.352 sum -0.775 -1.508 -10.198 10.338 Atomic orbital electron populations 1.21613 0.93739 1.00982 1.03379 1.21547 0.97828 0.92850 1.02711 1.19878 0.78991 0.98496 0.96629 0.86669 1.30907 0.96795 0.93137 0.93002 1.81105 1.13681 1.08480 1.08573 1.62471 1.56511 1.03493 1.00817 1.22173 0.98216 0.87438 0.99411 1.21667 1.00904 0.97497 0.95292 1.21687 0.97886 0.99208 0.96370 1.18660 0.97084 0.91307 0.89122 0.94405 1.21160 1.20624 1.22807 0.90729 0.92869 1.24911 0.94998 0.95033 0.98800 1.69890 1.29994 1.30358 1.22378 0.86586 0.79530 0.79088 0.83102 1.19877 1.21098 1.20984 1.22509 0.95228 0.98890 0.90191 0.90590 0.92946 0.93131 0.91556 0.90665 0.91682 0.95645 0.91690 0.93278 0.88900 0.95228 0.93086 0.95966 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.71 37.15 0.36 -1.15 16 2 C -0.11 -1.29 5.27 -26.74 -0.14 -1.43 16 3 C 0.17 2.29 2.21 -70.50 -0.16 2.14 16 4 H 0.12 1.20 7.97 -51.93 -0.41 0.79 16 5 C 0.18 2.91 12.32 -20.76 -0.26 2.65 16 6 N -0.44 -8.14 18.54 42.15 0.78 -7.36 16 7 N -0.51 -8.35 4.05 -230.07 -0.93 -9.28 16 8 C 0.06 0.90 5.19 -3.84 -0.02 0.88 16 9 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 10 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 11 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 12 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -24.83 11.36 55.43 0.63 -24.20 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.06 1.18 4.00 -3.83 -0.02 1.16 16 22 H 0.08 0.99 7.84 -51.92 -0.41 0.58 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 27 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 28 H 0.03 0.45 7.62 -51.93 -0.40 0.05 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 2.39 6.16 -51.93 -0.32 2.08 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.02 0.49 7.17 -51.93 -0.37 0.12 16 35 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 LS Contribution 281.10 15.07 4.24 4.24 Total: -1.00 -28.72 281.10 -6.90 -35.62 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.48 Total: -3.06 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.12 Total: -12.16 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.48 Total: -40.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.72 -6.90 -35.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306771451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.550 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds