Wall clock time and date at job start Mon Mar 30 2020 03:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99682 * 359.72372 * 7 2 1 10 10 O 1.42099 * 106.40365 * 293.53683 * 9 7 2 11 11 O 1.42097 * 106.40383 * 66.46366 * 9 7 2 12 12 N 1.65604 * 107.21290 * 180.02562 * 9 7 2 13 13 C 1.46132 * 122.49428 * 269.73363 * 12 9 7 14 14 C 1.55704 * 109.35745 * 149.13036 * 13 12 9 15 15 S 1.84255 * 99.66236 * 40.68250 * 14 13 12 16 16 C 1.47056 * 122.50232 * 90.02580 * 12 9 7 17 17 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.47314 * 269.28871 * 13 12 9 19 19 H 1.09004 * 109.47417 * 29.23020 * 13 12 9 20 20 H 1.08997 * 111.54618 * 283.01996 * 14 13 12 21 21 H 1.08998 * 111.28100 * 158.23239 * 14 13 12 22 22 H 1.09001 * 110.33747 * 302.91466 * 16 12 9 23 23 H 1.09003 * 110.34025 * 65.05928 * 16 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 0.0061 10 8 0.4566 -2.7929 1.2588 11 8 0.4462 -2.7978 -1.2406 12 7 2.2483 -3.9354 0.0045 13 6 2.7726 -4.5182 -1.2287 14 6 4.2382 -4.9890 -0.9947 15 16 4.0655 -5.7112 0.6916 16 6 2.7893 -4.5130 1.2440 17 1 -0.4850 0.8401 0.0004 18 1 2.1562 -5.3689 -1.5194 19 1 2.7541 -3.7697 -2.0209 20 1 4.9336 -4.1496 -0.9975 21 1 4.5316 -5.7458 -1.7222 22 1 3.2413 -3.7347 1.8589 23 1 2.0024 -5.0241 1.7988 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748025.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:02 Heat of formation + Delta-G solvation = -86.107074 kcal Electronic energy + Delta-G solvation = -11977.375861 eV Core-core repulsion = 9657.393267 eV Total energy + Delta-G solvation = -2319.982594 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 223.012 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.47644 -35.40775 -34.10563 -33.16447 -30.08087 -26.26255 -26.10087 -22.18166 -18.90951 -17.82030 -16.65228 -16.06227 -15.61750 -14.90913 -14.46013 -13.90793 -13.42928 -13.02611 -12.54759 -12.27796 -12.04703 -11.74145 -11.33253 -11.27127 -10.73495 -10.65736 -10.43496 -10.35364 -9.88215 -9.32606 -9.11567 -8.50343 -7.64232 -6.78455 -5.42226 1.86025 2.04602 2.39748 3.01914 3.08829 3.15146 3.96870 4.34738 4.55404 4.77284 5.14788 5.43798 5.49735 5.69028 5.71071 5.84544 6.05200 6.10317 6.39747 7.21870 7.23921 7.87358 8.79981 10.15511 Molecular weight = 223.01amu Principal moments of inertia in cm(-1) A = 0.042467 B = 0.010731 C = 0.009902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.177660 B = 2608.569040 C = 2827.083632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.020 5.020 8 H 0.103 0.897 9 S 2.718 3.282 10 O -0.996 6.996 11 O -0.995 6.995 12 N -1.017 6.017 13 C 0.118 3.882 14 C -0.070 4.070 15 S -0.303 6.303 16 C 0.186 3.814 17 H 0.292 0.708 18 H 0.072 0.928 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.115 0.885 22 H 0.094 0.906 23 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -5.618 -1.326 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.819 3.181 10 O -0.986 6.986 11 O -0.986 6.986 12 N -0.852 5.852 13 C -0.010 4.010 14 C -0.219 4.219 15 S -0.079 6.079 16 C -0.051 4.051 17 H 0.103 0.897 18 H 0.090 0.910 19 H 0.115 0.885 20 H 0.117 0.883 21 H 0.133 0.867 22 H 0.112 0.888 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.972 -6.624 -0.749 9.647 hybrid contribution 0.505 2.131 -0.489 2.243 sum 7.477 -4.494 -1.238 8.811 Atomic orbital electron populations 1.69889 1.06799 1.30943 1.39732 1.24769 0.94507 1.00877 0.88412 0.86120 0.80153 0.79827 0.79228 1.19126 1.19872 1.18615 1.30536 1.06132 1.11464 1.67215 0.87879 1.00608 0.71810 0.72712 0.73003 1.93371 1.72516 1.87350 1.45387 1.93374 1.72052 1.87365 1.45790 1.58966 1.62639 1.55167 1.08439 1.21857 0.91630 0.99871 0.87599 1.24814 1.00062 1.03052 0.94015 1.87780 1.54594 1.46231 1.19315 1.23451 0.95763 0.96705 0.89139 0.89718 0.90989 0.88530 0.88294 0.86685 0.88827 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.35 13.19 55.43 0.73 -23.62 14 2 C 0.13 3.63 5.46 -17.82 -0.10 3.53 14 3 Si 0.92 20.14 29.54 -169.99 -5.02 15.11 14 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 14 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 14 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 14 7 C -1.02 -27.37 9.75 30.60 0.30 -27.07 14 8 H 0.10 2.53 7.81 -52.49 -0.41 2.12 14 9 S 2.72 70.71 5.07 -107.50 -0.54 70.17 14 10 O -1.00 -28.51 17.42 -57.17 -1.00 -29.51 14 11 O -1.00 -28.28 17.30 -57.17 -0.99 -29.27 14 12 N -1.02 -20.41 3.57 -115.56 -0.41 -20.82 14 13 C 0.12 1.93 6.31 -2.80 -0.02 1.91 14 14 C -0.07 -0.91 7.73 38.60 0.30 -0.61 14 15 S -0.30 -4.60 23.32 -107.50 -2.51 -7.11 14 16 C 0.19 3.30 7.37 60.15 0.44 3.74 14 17 H 0.29 7.56 8.31 -40.82 -0.34 7.22 14 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 14 19 H 0.10 1.56 7.94 -51.93 -0.41 1.15 14 20 H 0.10 1.21 8.14 -51.93 -0.42 0.79 14 21 H 0.11 1.15 8.14 -51.93 -0.42 0.72 14 22 H 0.09 1.60 8.14 -51.93 -0.42 1.18 14 23 H 0.10 1.68 8.14 -51.93 -0.42 1.25 14 LS Contribution 232.13 15.07 3.50 3.50 Total: -1.00 -33.20 232.13 -7.39 -40.59 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -2.07 Total: -0.55 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 0.92 Total: -18.49 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.32 Total: -44.44 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -1.99 Total: -58.78 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 66.11 SS G_CDS: -3.05 Total: 63.06 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.20 -7.39 -40.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748025.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.519 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds