Wall clock time and date at job start Mon Mar 30 2020 02:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 H 1.09003 * 115.54805 * 29.32746 * 3 2 1 5 5 C 1.53002 * 117.50128 * 243.62448 * 3 2 1 6 6 C 1.52994 * 117.50000 * 175.00089 * 3 2 1 7 7 H 1.09001 * 117.49915 * 359.97438 * 6 3 2 8 8 N 1.46905 * 117.49832 * 214.97885 * 6 3 2 9 9 C 1.46900 * 110.99729 * 154.99888 * 8 6 3 10 10 C 1.53004 * 109.47048 * 180.02562 * 9 8 6 11 11 H 1.09006 * 109.47304 * 305.00197 * 10 9 8 12 12 C 1.47202 * 109.46954 * 65.00026 * 10 9 8 13 13 N 6.57293 * 114.74834 * 45.73040 * 2 1 3 14 14 C 1.52992 * 109.47321 * 185.00056 * 10 9 8 15 15 C 1.50700 * 109.47257 * 174.99983 * 14 10 9 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 10 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 H 1.08997 * 109.47161 * 299.99703 * 1 2 3 24 24 H 1.09004 * 109.47206 * 60.00044 * 1 2 3 25 25 H 1.09005 * 109.46633 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47161 * 240.00297 * 2 1 3 27 27 H 1.08997 * 109.47528 * 120.00043 * 2 1 3 28 28 H 1.09002 * 117.50142 * 145.01809 * 5 3 2 29 29 H 1.08995 * 117.49485 * 359.97438 * 5 3 2 30 30 H 1.00897 * 110.99986 * 278.95530 * 8 6 3 31 31 H 1.08998 * 109.47037 * 60.00453 * 9 8 6 32 32 H 1.08997 * 109.47380 * 300.00214 * 9 8 6 33 33 H 1.09004 * 109.47330 * 55.00006 * 14 10 9 34 34 H 1.08997 * 109.47279 * 295.00493 * 14 10 9 35 35 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8439 1.9077 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7720 0.1965 8 7 4.0108 2.8317 0.8719 9 6 5.3629 2.6176 1.4048 10 6 5.8071 3.8584 2.1822 11 1 5.7264 4.7367 1.5417 12 6 4.9458 4.0317 3.3634 13 7 4.2817 4.1667 4.2744 14 6 7.2595 3.6862 2.6310 15 6 7.7359 4.9556 3.2889 16 1 7.0694 5.8008 3.3776 17 6 9.0229 5.0383 3.7766 18 7 9.4385 6.1459 4.3512 19 14 10.1737 3.5742 3.6286 20 1 10.9191 3.6581 2.3470 21 1 11.1340 3.5831 4.7613 22 1 9.3827 2.3178 3.6600 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.7212 2.9428 -1.5344 29 1 3.0098 1.1858 -2.0155 30 1 3.9740 3.6641 0.3028 31 1 6.0538 2.4379 0.5812 32 1 5.3587 1.7545 2.0704 33 1 7.8843 3.4695 1.7644 34 1 7.3251 2.8620 3.3412 35 1 10.3440 6.2042 4.6939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378668231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:20 Heat of formation + Delta-G solvation = 28.740287 kcal Electronic energy + Delta-G solvation = -14373.067262 eV Core-core repulsion = 11985.085946 eV Total energy + Delta-G solvation = -2387.981315 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.59874 -36.80494 -34.47669 -33.29241 -32.05632 -30.59410 -26.79259 -23.99302 -22.84630 -21.76207 -21.19510 -20.40855 -17.07581 -16.86568 -15.74882 -15.18693 -14.59962 -14.39309 -14.23088 -13.61509 -13.32616 -12.75306 -12.57419 -12.45461 -12.22102 -12.14059 -11.93114 -11.53739 -11.36989 -11.24901 -11.14618 -10.77292 -10.56654 -10.41340 -10.17872 -9.90133 -9.67661 -9.33006 -8.62381 -8.16645 -6.11193 -4.11931 3.25175 3.34349 3.35284 3.67272 3.71349 3.79166 4.03027 4.37738 4.69685 4.77020 4.85671 4.92161 5.06842 5.19629 5.23568 5.31414 5.43351 5.57369 5.58724 5.68276 5.73750 5.82861 5.89250 5.95488 5.99292 6.21574 6.27718 6.29554 6.90890 7.05228 7.11791 7.38526 7.63039 8.40046 8.55064 8.92461 9.48543 11.01930 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.044372 B = 0.005028 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.876174 B = 5567.205274 C = 5827.037830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.144 4.144 4 H 0.106 0.894 5 C -0.203 4.203 6 C 0.031 3.969 7 H 0.109 0.891 8 N -0.662 5.662 9 C 0.066 3.934 10 C 0.019 3.981 11 H 0.105 0.895 12 C 0.252 3.748 13 N -0.470 5.470 14 C -0.005 4.005 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.344 0.656 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 -11.689 -12.868 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.163 4.163 4 H 0.124 0.876 5 C -0.242 4.242 6 C -0.080 4.080 7 H 0.126 0.874 8 N -0.292 5.292 9 C -0.064 4.064 10 C -0.003 4.003 11 H 0.122 0.878 12 C -0.066 4.066 13 N -0.146 5.146 14 C -0.044 4.044 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.188 1.188 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.164 0.836 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.115 -11.567 -10.794 19.927 hybrid contribution 1.533 -0.497 -1.142 1.975 sum -10.582 -12.064 -11.936 20.000 Atomic orbital electron populations 1.21739 0.95618 1.01317 1.01921 1.21099 0.95888 0.94338 1.01735 1.22635 0.94641 0.97790 1.01267 0.87559 1.23604 1.06193 1.02358 0.92037 1.22499 0.94746 0.95527 0.95248 0.87359 1.60210 1.25515 1.03960 1.39499 1.22145 0.87852 0.98338 0.98085 1.18959 0.94159 0.98396 0.88783 0.87759 1.28668 0.91843 0.92191 0.93872 1.80974 1.12427 1.09499 1.11733 1.19633 0.88468 0.98990 0.97296 1.21032 0.98583 0.98597 1.38407 0.90772 1.24998 0.98029 0.95712 0.94396 1.69908 1.18078 1.26488 1.39022 0.86813 0.80999 0.83742 0.77982 1.20053 1.21286 1.18849 0.92600 0.92767 0.92938 0.92130 0.91642 0.88786 0.88963 0.83605 0.93022 0.90354 0.94916 0.95608 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.87 37.16 0.37 -0.83 16 2 C -0.09 -0.82 6.22 -26.73 -0.17 -0.99 16 3 C -0.14 -1.47 5.66 -90.62 -0.51 -1.98 16 4 H 0.11 1.22 8.07 -51.93 -0.42 0.80 16 5 C -0.20 -1.86 9.88 -26.73 -0.26 -2.12 16 6 C 0.03 0.33 6.03 -67.71 -0.41 -0.08 16 7 H 0.11 1.12 7.90 -51.93 -0.41 0.71 16 8 N -0.66 -8.41 6.48 -106.73 -0.69 -9.10 16 9 C 0.07 0.90 4.90 -3.82 -0.02 0.89 16 10 C 0.02 0.33 2.35 -93.41 -0.22 0.11 16 11 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.25 5.26 13.67 -20.78 -0.28 4.98 16 13 N -0.47 -10.85 18.53 42.13 0.78 -10.07 16 14 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 15 C -0.53 -14.25 9.15 -34.44 -0.32 -14.56 16 16 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 19 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 30 H 0.34 3.96 8.52 -39.29 -0.33 3.62 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.03 0.64 7.58 -51.93 -0.39 0.25 16 34 H 0.03 0.56 7.19 -51.93 -0.37 0.19 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 300.28 15.07 4.53 4.53 Total: -1.00 -30.99 300.28 -7.01 -38.01 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.71 Total: -0.08 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.02 Total: -12.89 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.86 Total: -45.50 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.99 -7.01 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378668231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.748 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds