Wall clock time and date at job start Mon Mar 30 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46972 * 2 1 4 4 H 1.08999 * 115.55295 * 29.33180 * 3 2 1 5 5 C 1.52997 * 117.49797 * 243.61606 * 3 2 1 6 6 C 1.53000 * 60.00347 * 252.51337 * 5 3 2 7 7 H 1.09004 * 117.49237 * 107.48843 * 6 5 3 8 8 N 1.46890 * 117.50145 * 252.51152 * 6 5 3 9 9 C 1.46901 * 111.00370 * 223.62265 * 8 6 5 10 10 C 1.52993 * 109.47687 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.46807 * 54.99874 * 10 9 8 12 12 C 1.47196 * 109.47336 * 295.00328 * 10 9 8 13 13 N 7.41798 * 127.27404 * 5.30135 * 2 1 3 14 14 C 1.52994 * 109.47477 * 174.99638 * 10 9 8 15 15 C 1.50702 * 109.47284 * 185.00085 * 14 10 9 16 16 H 1.07994 * 119.99842 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99705 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99962 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46821 * 89.99850 * 19 17 15 21 21 H 1.48491 * 109.47158 * 210.00044 * 19 17 15 22 22 H 1.48495 * 109.47117 * 330.00279 * 19 17 15 23 23 H 1.09006 * 109.46817 * 60.00056 * 1 2 3 24 24 H 1.08999 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47138 * 300.00384 * 1 2 3 26 26 H 1.09002 * 109.47026 * 240.00010 * 2 1 3 27 27 H 1.08997 * 109.46999 * 120.00088 * 2 1 3 28 28 H 1.09002 * 117.49910 * 145.02477 * 5 3 2 29 29 H 1.09002 * 117.49884 * 0.02562 * 5 3 2 30 30 H 1.00898 * 111.00159 * 347.57592 * 8 6 5 31 31 H 1.09000 * 109.47049 * 300.00541 * 9 8 6 32 32 H 1.08997 * 109.46891 * 59.99688 * 9 8 6 33 33 H 1.08994 * 109.47302 * 305.00492 * 14 10 9 34 34 H 1.09006 * 109.46751 * 65.00385 * 14 10 9 35 35 H 0.97008 * 119.99368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7718 0.1961 8 7 4.0109 2.8315 0.8720 9 6 5.3630 2.6175 1.4050 10 6 5.8077 3.8586 2.1813 11 1 5.0695 4.0906 2.9491 12 6 5.9292 4.9979 1.2573 13 7 6.0226 5.8776 0.5454 14 6 7.1619 3.5898 2.8405 15 6 7.5422 4.7648 3.7041 16 1 6.8837 5.6177 3.7760 17 6 8.7310 4.7508 4.4026 18 7 9.5331 3.7123 4.3147 19 14 9.2028 6.2075 5.4725 20 1 8.6798 6.0020 6.8471 21 1 10.6820 6.3292 5.5187 22 1 8.6216 7.4493 4.9023 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7214 2.9427 -1.5343 29 1 3.0094 1.1859 -2.0158 30 1 3.9742 3.6639 0.3030 31 1 5.3587 1.7543 2.0706 32 1 6.0539 2.4377 0.5814 33 1 7.0946 2.6930 3.4563 34 1 7.9189 3.4453 2.0696 35 1 10.3693 3.7024 4.8064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378668232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:22 Heat of formation + Delta-G solvation = 24.012915 kcal Electronic energy + Delta-G solvation = -14325.273315 eV Core-core repulsion = 11937.087005 eV Total energy + Delta-G solvation = -2388.186309 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.55795 -36.81685 -34.46500 -33.33707 -32.00488 -30.34359 -26.34387 -23.96227 -22.88715 -21.97695 -21.21294 -20.36129 -16.72212 -16.54944 -15.71624 -15.43568 -14.65022 -14.54891 -14.12187 -13.21913 -13.09154 -13.00565 -12.53570 -12.36087 -12.17215 -12.10780 -11.83626 -11.37148 -11.27976 -11.11535 -11.03523 -10.81905 -10.58172 -10.54120 -10.22409 -9.99632 -9.52500 -9.22142 -8.45719 -8.12391 -6.09900 -4.13013 3.29430 3.36152 3.40776 3.55257 3.59911 3.74554 4.09737 4.41456 4.74538 4.79074 4.89922 4.94429 5.10333 5.23089 5.28162 5.37327 5.52981 5.62688 5.66970 5.73464 5.77889 5.86435 5.98341 6.02209 6.14296 6.29023 6.39455 6.53419 7.13346 7.39158 7.43568 7.52415 7.85185 8.22684 8.38535 8.91501 9.52468 11.01000 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.047096 B = 0.004686 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.388921 B = 5973.342575 C = 6230.784816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.142 4.142 4 H 0.107 0.893 5 C -0.207 4.207 6 C 0.030 3.970 7 H 0.110 0.890 8 N -0.661 5.661 9 C 0.069 3.931 10 C 0.006 3.994 11 H 0.111 0.889 12 C 0.241 3.759 13 N -0.476 5.476 14 C 0.032 3.968 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.340 0.660 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.040 0.960 34 H 0.025 0.975 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -8.308 -7.104 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.161 4.161 4 H 0.125 0.875 5 C -0.245 4.245 6 C -0.081 4.081 7 H 0.128 0.872 8 N -0.291 5.291 9 C -0.061 4.061 10 C -0.016 4.016 11 H 0.129 0.871 12 C -0.076 4.076 13 N -0.153 5.153 14 C -0.006 4.006 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.159 0.841 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.541 -7.218 -7.521 17.088 hybrid contribution 0.907 0.634 0.095 1.111 sum -12.633 -6.584 -7.426 16.065 Atomic orbital electron populations 1.21739 0.95653 1.01301 1.01885 1.21103 0.95823 0.94309 1.01831 1.22628 0.94550 0.97770 1.01163 0.87527 1.23607 1.06438 1.02296 0.92203 1.22527 0.94695 0.95623 0.95224 0.87181 1.60304 1.25691 1.03819 1.39278 1.22133 0.87243 0.98421 0.98284 1.19344 1.03589 0.85666 0.93020 0.87092 1.29303 0.91252 0.94171 0.92845 1.81012 1.10823 1.11199 1.12295 1.19165 0.87570 0.98328 0.95564 1.21149 1.04824 1.02951 1.27565 0.92490 1.24956 0.96283 0.96044 0.96695 1.69941 1.11532 1.29389 1.42173 0.86584 0.77650 0.82985 0.80830 1.20410 1.21164 1.19879 0.92846 0.92941 0.92571 0.92161 0.91473 0.89003 0.88936 0.84099 0.88871 0.94464 0.94149 0.95712 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.87 37.16 0.37 -0.80 16 2 C -0.09 -0.82 6.22 -26.73 -0.17 -0.98 16 3 C -0.14 -1.47 5.66 -90.62 -0.51 -1.99 16 4 H 0.11 1.19 8.07 -51.93 -0.42 0.77 16 5 C -0.21 -2.15 9.88 -26.73 -0.26 -2.41 16 6 C 0.03 0.35 6.03 -67.71 -0.41 -0.06 16 7 H 0.11 1.22 7.90 -51.93 -0.41 0.81 16 8 N -0.66 -9.06 6.78 -106.73 -0.72 -9.78 16 9 C 0.07 1.03 4.97 -3.83 -0.02 1.01 16 10 C 0.01 0.11 2.42 -93.42 -0.23 -0.12 16 11 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 12 C 0.24 4.91 12.97 -20.78 -0.27 4.64 16 13 N -0.48 -10.46 18.53 42.13 0.78 -9.68 16 14 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 15 C -0.53 -14.08 8.60 -34.44 -0.30 -14.38 16 16 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.49 7.88 -51.93 -0.41 0.09 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 30 H 0.34 4.83 7.59 -39.29 -0.30 4.53 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -28.97 302.70 -7.39 -36.37 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.71 Total: -0.16 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.02 Total: -12.83 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.79 Total: -44.29 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.97 -7.39 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378668232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.380 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds