Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46972 * 2 1 4 4 H 1.08999 * 115.55295 * 29.33180 * 3 2 1 5 5 C 1.52997 * 117.49797 * 243.61606 * 3 2 1 6 6 C 1.53000 * 60.00347 * 252.51337 * 5 3 2 7 7 H 1.09004 * 117.49237 * 107.48843 * 6 5 3 8 8 N 1.46890 * 117.50145 * 252.51152 * 6 5 3 9 9 C 1.46901 * 111.00370 * 223.62265 * 8 6 5 10 10 C 1.52993 * 109.47687 * 179.97438 * 9 8 6 11 11 H 1.09007 * 109.46807 * 54.99874 * 10 9 8 12 12 C 1.47196 * 109.47336 * 295.00328 * 10 9 8 13 13 N 7.41798 * 127.27404 * 5.30135 * 2 1 3 14 14 C 1.52994 * 109.47477 * 174.99638 * 10 9 8 15 15 C 1.50702 * 109.47284 * 185.00085 * 14 10 9 16 16 H 1.07994 * 119.99842 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99705 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99962 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46821 * 89.99850 * 19 17 15 21 21 H 1.48491 * 109.47158 * 210.00044 * 19 17 15 22 22 H 1.48495 * 109.47117 * 330.00279 * 19 17 15 23 23 H 1.09006 * 109.46817 * 60.00056 * 1 2 3 24 24 H 1.08999 * 109.47001 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47138 * 300.00384 * 1 2 3 26 26 H 1.09002 * 109.47026 * 240.00010 * 2 1 3 27 27 H 1.08997 * 109.46999 * 120.00088 * 2 1 3 28 28 H 1.09002 * 117.49910 * 145.02477 * 5 3 2 29 29 H 1.09002 * 117.49884 * 0.02562 * 5 3 2 30 30 H 1.00898 * 111.00159 * 347.57592 * 8 6 5 31 31 H 1.09000 * 109.47049 * 300.00541 * 9 8 6 32 32 H 1.08997 * 109.46891 * 59.99688 * 9 8 6 33 33 H 1.08994 * 109.47302 * 305.00492 * 14 10 9 34 34 H 1.09006 * 109.46751 * 65.00385 * 14 10 9 35 35 H 0.97008 * 119.99368 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8440 1.9075 -1.2158 6 6 3.5502 1.6579 0.1184 7 1 4.1803 0.7718 0.1961 8 7 4.0109 2.8315 0.8720 9 6 5.3630 2.6175 1.4050 10 6 5.8077 3.8586 2.1813 11 1 5.0695 4.0906 2.9491 12 6 5.9292 4.9979 1.2573 13 7 6.0226 5.8776 0.5454 14 6 7.1619 3.5898 2.8405 15 6 7.5422 4.7648 3.7041 16 1 6.8837 5.6177 3.7760 17 6 8.7310 4.7508 4.4026 18 7 9.5331 3.7123 4.3147 19 14 9.2028 6.2075 5.4725 20 1 8.6798 6.0020 6.8471 21 1 10.6820 6.3292 5.5187 22 1 8.6216 7.4493 4.9023 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7214 2.9427 -1.5343 29 1 3.0094 1.1859 -2.0158 30 1 3.9742 3.6639 0.3030 31 1 5.3587 1.7543 2.0706 32 1 6.0539 2.4377 0.5814 33 1 7.0946 2.6930 3.4563 34 1 7.9189 3.4453 2.0696 35 1 10.3693 3.7024 4.8064 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378668232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = 7.271816 kcal Electronic energy + Delta-G solvation = -14325.999263 eV Core-core repulsion = 11937.087005 eV Total energy + Delta-G solvation = -2388.912258 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56895 -38.26098 -35.95840 -35.00914 -33.26925 -31.60907 -28.10249 -24.80830 -24.29901 -23.58767 -22.21963 -21.17340 -18.55343 -18.24434 -16.79852 -16.71847 -16.34017 -15.31877 -15.22684 -14.69609 -14.60409 -14.45500 -13.97664 -13.61331 -13.41949 -13.24114 -13.09261 -12.88988 -12.73385 -12.50396 -12.36597 -12.14649 -12.02724 -11.83396 -11.45788 -11.41345 -11.19994 -10.69071 -10.55099 -9.15321 -8.19961 -6.28235 1.40453 1.42016 1.51304 1.91528 1.93761 2.41238 2.83425 3.12231 3.15024 3.23053 3.94024 4.04360 4.08902 4.20994 4.37798 4.42047 4.51819 4.59670 4.72522 4.85324 4.87188 4.96273 5.01342 5.05240 5.22295 5.30345 5.36256 5.46587 5.56962 5.62058 5.78729 6.06328 6.21154 6.28093 6.72659 6.86362 7.40378 8.90973 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.047096 B = 0.004686 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.388921 B = 5973.342575 C = 6230.784816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.135 4.135 4 H 0.098 0.902 5 C -0.200 4.200 6 C 0.014 3.986 7 H 0.118 0.882 8 N -0.664 5.664 9 C 0.081 3.919 10 C 0.018 3.982 11 H 0.123 0.877 12 C 0.251 3.749 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.949 3.051 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.276 1.276 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.335 0.665 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.001 0.999 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 -8.782 -7.130 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.154 4.154 4 H 0.116 0.884 5 C -0.239 4.239 6 C -0.097 4.097 7 H 0.136 0.864 8 N -0.293 5.293 9 C -0.049 4.049 10 C -0.004 4.004 11 H 0.140 0.860 12 C -0.065 4.065 13 N -0.182 5.182 14 C -0.001 4.001 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.201 1.201 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.020 0.980 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.585 -7.697 -7.549 18.137 hybrid contribution 1.201 0.768 0.078 1.428 sum -13.384 -6.929 -7.471 16.821 Atomic orbital electron populations 1.21729 0.94966 1.02001 1.01773 1.21117 0.96405 0.93133 1.02246 1.22655 0.93432 0.98625 1.00697 0.88396 1.23640 1.05568 1.02481 0.92172 1.22638 0.95685 0.95084 0.96256 0.86424 1.60296 1.24508 1.04535 1.39947 1.21967 0.88042 0.96755 0.98146 1.19242 1.01344 0.86580 0.93218 0.85969 1.29641 0.90457 0.93967 0.92432 1.81011 1.11582 1.12155 1.13415 1.18988 0.89388 0.97065 0.94609 1.21558 1.04774 1.03802 1.27747 0.92832 1.25716 0.96531 0.98395 0.98104 1.70033 1.11988 1.31021 1.43248 0.85678 0.77289 0.79807 0.79707 1.19131 1.20957 1.20128 0.92748 0.91862 0.92922 0.91311 0.91487 0.89455 0.87548 0.84607 0.87525 0.94593 0.94419 0.98018 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.87 71.98 0.71 -1.31 16 2 C -0.09 -1.41 6.22 30.59 0.19 -1.22 16 3 C -0.13 -2.56 5.66 -10.79 -0.06 -2.62 16 4 H 0.10 2.05 8.07 -2.39 -0.02 2.03 16 5 C -0.20 -3.79 9.88 30.59 0.30 -3.49 16 6 C 0.01 0.30 6.03 44.92 0.27 0.57 16 7 H 0.12 2.37 7.90 -2.38 -0.02 2.35 16 8 N -0.66 -17.24 6.78 -491.59 -3.33 -20.57 16 9 C 0.08 2.32 4.97 86.30 0.43 2.74 16 10 C 0.02 0.65 2.42 -12.60 -0.03 0.62 16 11 H 0.12 4.19 8.14 -2.38 -0.02 4.17 16 12 C 0.25 10.10 12.97 89.45 1.16 11.26 16 13 N -0.50 -21.95 18.53 20.00 0.37 -21.58 16 14 C 0.04 1.77 4.42 29.85 0.13 1.90 16 15 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 16 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 17 C 0.01 0.63 5.46 84.66 0.46 1.10 16 18 N -0.92 -53.05 13.29 21.45 0.28 -52.77 16 19 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.95 7.88 -2.39 -0.02 0.93 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 29 H 0.11 1.73 8.03 -2.39 -0.02 1.71 16 30 H 0.34 9.16 7.59 -89.70 -0.68 8.48 16 31 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 35 H 0.26 14.41 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -60.28 302.70 3.51 -56.77 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.38 Total: 11.59 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.79 Total: -19.03 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -2.68 Total: -94.92 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -60.28 3.51 -56.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378668232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.037 kcal (2) G-P(sol) polarization free energy of solvation -60.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds