Wall clock time and date at job start Mon Mar 30 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47340 * 2 1 4 4 C 1.36346 * 125.64029 * 89.96864 * 3 2 1 5 5 C 1.34844 * 108.21930 * 179.97438 * 4 3 2 6 6 C 1.40895 * 107.41841 * 359.97438 * 5 4 3 7 7 C 1.50706 * 126.29033 * 179.73472 * 6 5 4 8 8 N 1.46894 * 109.47207 * 90.02764 * 7 6 5 9 9 C 1.46901 * 111.00028 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46769 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46822 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99687 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99817 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00205 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99763 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46908 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46928 * 120.00076 * 15 13 11 18 18 H 1.48498 * 109.47085 * 240.00343 * 15 13 11 19 19 C 1.34848 * 107.41714 * 0.02562 * 6 5 4 20 20 H 1.09001 * 109.47283 * 300.00590 * 1 2 3 21 21 H 1.09000 * 109.46682 * 60.00560 * 1 2 3 22 22 H 1.08995 * 109.47110 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47525 * 239.99870 * 2 1 3 24 24 H 1.09004 * 109.47123 * 119.99598 * 2 1 3 25 25 H 1.07994 * 125.88498 * 359.96247 * 4 3 2 26 26 H 1.07998 * 126.29086 * 180.02562 * 5 4 3 27 27 H 1.09001 * 109.47030 * 210.02627 * 7 6 5 28 28 H 1.09007 * 109.46992 * 330.02437 * 7 6 5 29 29 H 1.00903 * 110.99709 * 303.95775 * 8 7 6 30 30 H 1.08997 * 109.47031 * 299.99801 * 9 8 7 31 31 H 1.08995 * 109.46657 * 60.00246 * 9 8 7 32 32 H 1.08997 * 109.47403 * 299.99844 * 10 9 8 33 33 H 1.09002 * 109.46831 * 60.00581 * 10 9 8 34 34 H 0.97001 * 120.00201 * 180.02562 * 14 13 11 35 35 H 1.08001 * 125.89182 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2827 2.1304 1.1081 5 6 2.7123 3.3432 0.7044 6 6 2.7139 3.3425 -0.7046 7 6 3.1149 4.4891 -1.5966 8 7 4.5527 4.4054 -1.8853 9 6 4.9803 5.5094 -2.7550 10 6 6.4802 5.3887 -3.0322 11 6 6.9187 6.5209 -3.9249 12 1 6.1996 7.2534 -4.2605 13 6 8.2378 6.6215 -4.3131 14 7 9.1133 5.7292 -3.9047 15 14 8.7812 8.0246 -5.4202 16 1 7.6137 8.8858 -5.7369 17 1 9.8165 8.8310 -4.7252 18 1 9.3454 7.4725 -6.6780 19 6 2.2847 2.1296 -1.1082 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.1675 1.8082 2.1324 26 1 3.0027 4.1638 1.3435 27 1 2.5534 4.4373 -2.5295 28 1 2.8993 5.4325 -1.0948 29 1 5.0922 4.3864 -1.0328 30 1 4.4318 5.4641 -3.6958 31 1 4.7777 6.4599 -2.2616 32 1 7.0284 5.4342 -2.0912 33 1 6.6831 4.4381 -3.5255 34 1 10.0415 5.8001 -4.1775 35 1 2.1712 1.8067 -2.1325 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379564836.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:31 Heat of formation + Delta-G solvation = 35.963440 kcal Electronic energy + Delta-G solvation = -14262.458284 eV Core-core repulsion = 11874.790188 eV Total energy + Delta-G solvation = -2387.668096 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05159 -35.97005 -34.19484 -32.79573 -30.43991 -28.96424 -28.24553 -25.20364 -23.50512 -22.60961 -20.46091 -20.04354 -19.25986 -17.00741 -16.21415 -15.10743 -14.88817 -14.68668 -14.37811 -13.68672 -13.45048 -13.37413 -12.91235 -12.62269 -12.31104 -12.18149 -11.97423 -11.74123 -11.42383 -11.16960 -10.89595 -10.77584 -10.46378 -9.88545 -9.32079 -9.07078 -8.37717 -8.28463 -7.92751 -7.56604 -5.93053 -3.95189 2.40175 2.98761 3.16856 3.35628 3.42617 3.47214 4.45217 4.50950 4.73786 4.89618 5.05903 5.20218 5.27968 5.34938 5.39235 5.42719 5.61402 5.70966 5.73099 5.98379 6.13478 6.33500 6.49180 6.52711 6.67896 7.10243 7.17306 7.38892 7.51865 7.65526 7.86026 7.94628 8.12809 8.21790 8.52896 9.12748 9.68144 11.18478 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.069278 B = 0.003938 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.069470 B = 7107.756855 C = 7157.659467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.452 5.452 4 C -0.023 4.023 5 C -0.193 4.193 6 C -0.156 4.156 7 C 0.130 3.870 8 N -0.688 5.688 9 C 0.065 3.935 10 C 0.025 3.975 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.003 3.997 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.026 0.974 29 H 0.337 0.663 30 H 0.056 0.944 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.259 0.741 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.535 -10.507 9.199 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.129 5.129 4 C -0.152 4.152 5 C -0.218 4.218 6 C -0.162 4.162 7 C 0.000 4.000 8 N -0.318 5.318 9 C -0.063 4.063 10 C -0.013 4.013 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.127 4.127 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.173 0.827 26 H 0.149 0.851 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.154 0.846 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.567 -11.347 8.653 21.865 hybrid contribution 0.416 1.448 0.068 1.508 sum -16.151 -9.900 8.721 20.855 Atomic orbital electron populations 1.22176 0.94736 1.02645 1.03149 1.21756 0.95144 0.80965 1.04089 1.44079 1.51297 1.11361 1.06184 1.21659 1.09497 0.92814 0.91249 1.20820 1.08689 0.97544 0.94753 1.19463 1.07266 0.95854 0.93656 1.20185 0.90396 0.93001 0.96405 1.60625 1.02338 1.47992 1.20884 1.22157 0.99951 0.89271 0.94953 1.19073 0.88079 0.97440 0.96691 1.21248 0.93907 1.10710 1.29920 0.92709 1.25013 0.96833 0.96213 0.96422 1.69990 1.02859 1.35053 1.45439 0.86538 0.78594 0.82369 0.80500 1.19767 1.21080 1.21026 1.21602 1.07838 0.92104 0.91194 0.92007 0.91838 0.91028 0.89387 0.89602 0.82736 0.85145 0.91452 0.95562 0.84619 0.92505 0.96842 0.96832 0.95708 0.93120 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.10 0.78 6.81 -4.04 -0.03 0.76 16 3 N -0.45 -5.23 2.75 -117.13 -0.32 -5.55 16 4 C -0.02 -0.28 11.43 -16.75 -0.19 -0.47 16 5 C -0.19 -2.71 10.81 -39.78 -0.43 -3.14 16 6 C -0.16 -2.38 5.65 -104.82 -0.59 -2.97 16 7 C 0.13 2.16 6.18 -4.98 -0.03 2.13 16 8 N -0.69 -13.57 6.49 -115.06 -0.75 -14.32 16 9 C 0.06 1.46 5.62 -3.82 -0.02 1.44 16 10 C 0.02 0.67 5.23 -27.88 -0.15 0.53 16 11 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 12 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.13 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 C 0.00 0.04 11.35 -16.75 -0.19 -0.15 16 20 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 26 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.34 6.62 8.72 -39.29 -0.34 6.28 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -32.50 299.78 -8.30 -40.80 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.80 Total: 0.92 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.66 Total: -16.57 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -0.33 Total: -46.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.50 -8.30 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379564836.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.761 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds