Wall clock time and date at job start Mon Mar 30 2020 02:53:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.46764 * 2 1
4 4 N 1.46905 * 109.47136 * 119.99311 * 2 1 3
5 5 C 1.46902 * 110.99800 * 275.00438 * 4 2 1
6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2
7 7 H 1.08992 * 109.47046 * 304.99696 * 6 5 4
8 8 C 1.47204 * 109.47257 * 64.99983 * 6 5 4
9 9 N 4.90935 * 135.91307 * 112.22175 * 2 1 3
10 10 C 1.52999 * 109.46811 * 184.99853 * 6 5 4
11 11 C 1.50704 * 109.46935 * 175.00197 * 10 6 5
12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 6
13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 6
14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11
17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11
18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11
19 19 C 1.52993 * 109.47422 * 239.99764 * 2 1 3
20 20 C 1.52999 * 117.50176 * 128.61919 * 19 2 1
21 21 C 1.52993 * 60.00021 * 252.50838 * 20 19 2
22 22 H 1.09001 * 109.47216 * 60.00583 * 1 2 3
23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47712 * 300.00099 * 1 2 3
25 25 H 1.00904 * 110.99696 * 151.04867 * 4 2 1
26 26 H 1.08993 * 109.47737 * 60.00169 * 5 4 2
27 27 H 1.09000 * 109.47263 * 299.99731 * 5 4 2
28 28 H 1.09003 * 109.46920 * 294.99990 * 10 6 5
29 29 H 1.08995 * 109.47278 * 54.99923 * 10 6 5
30 30 H 0.97001 * 119.99765 * 179.97438 * 14 13 11
31 31 H 1.09004 * 115.54513 * 274.32709 * 19 2 1
32 32 H 1.08996 * 117.49831 * 0.02562 * 20 19 2
33 33 H 1.09005 * 117.49966 * 145.01626 * 20 19 2
34 34 H 1.09002 * 117.50106 * 252.50655 * 21 20 19
35 35 H 1.09006 * 117.51774 * 107.48217 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 1.1996
5 6 2.0823 0.2229 2.3469
6 6 2.5961 -0.5325 3.5743
7 1 1.9709 -1.4078 3.7502
8 6 3.9852 -0.9605 3.3411
9 7 5.0563 -1.2918 3.1620
10 6 2.5438 0.3857 4.7970
11 6 2.9329 -0.3932 6.0271
12 1 3.1912 -1.4386 5.9450
13 6 2.9580 0.2287 7.2575
14 7 2.6430 1.5016 7.3574
15 14 3.4396 -0.7369 8.7823
16 1 4.9081 -0.6450 8.9831
17 1 2.7419 -0.1734 9.9658
18 1 3.0518 -2.1600 8.6100
19 6 2.0400 -0.7213 -1.2491
20 6 3.0741 0.0051 -2.1116
21 6 1.6358 -0.1497 -2.6095
22 1 -0.3634 0.5137 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 2.9173 -1.1204 1.0289
26 1 1.0870 0.6166 2.5525
27 1 2.7587 1.0465 2.1182
28 1 3.2368 1.2155 4.6581
29 1 1.5322 0.7733 4.9172
30 1 2.6603 1.9390 8.2230
31 1 2.1268 -1.8045 -1.1640
32 1 3.3914 0.9967 -1.7889
33 1 3.8417 -0.6002 -2.5940
34 1 1.4569 -0.8568 -3.4196
35 1 1.0061 0.7401 -2.6147
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379652410.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:12
Heat of formation + Delta-G solvation = 29.503149 kcal
Electronic energy + Delta-G solvation = -14614.091274 eV
Core-core repulsion = 12226.143039 eV
Total energy + Delta-G solvation = -2387.948235 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-38.63446 -36.91168 -34.85064 -33.52310 -31.78359 -29.35816 -26.41899 -24.11742
-22.44716 -22.07096 -21.81861 -19.97970 -16.70436 -16.60480 -16.34248 -15.24614
-14.63331 -14.52350 -13.90441 -13.52004 -13.08692 -12.72870 -12.71019 -12.16608
-12.04231 -11.92135 -11.73792 -11.50609 -11.23169 -11.04826 -10.74053 -10.71402
-10.62094 -10.41813 -10.26796 -10.09978 -9.52100 -9.21466 -8.44976 -8.29923
-6.08930 -4.11969 3.30491 3.36982 3.40539 3.57604 3.62586 3.64959
4.16949 4.42360 4.59903 4.78292 4.82610 4.92282 5.22543 5.29151
5.32076 5.45713 5.47297 5.63531 5.71546 5.74826 5.78033 5.95333
6.02035 6.07107 6.16302 6.35268 6.41776 6.56516 7.18190 7.44182
7.49324 7.54357 7.86265 8.24007 8.41389 8.92629 9.53461 11.02024
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.049481 B = 0.005214 C = 0.004933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 565.743052 B = 5369.153410 C = 5675.031122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.113 3.887
3 H 0.043 0.957
4 N -0.686 5.686
5 C 0.067 3.933
6 C 0.007 3.993
7 H 0.111 0.889
8 C 0.242 3.758
9 N -0.477 5.477
10 C 0.032 3.968
11 C -0.526 4.526
12 H 0.057 0.943
13 C 0.062 3.938
14 N -0.892 5.892
15 Si 0.892 3.108
16 H -0.281 1.281
17 H -0.285 1.285
18 H -0.272 1.272
19 C -0.154 4.154
20 C -0.185 4.185
21 C -0.173 4.173
22 H 0.052 0.948
23 H 0.062 0.938
24 H 0.057 0.943
25 H 0.339 0.661
26 H 0.091 0.909
27 H 0.034 0.966
28 H 0.024 0.976
29 H 0.040 0.960
30 H 0.262 0.738
31 H 0.110 0.890
32 H 0.092 0.908
33 H 0.092 0.908
34 H 0.093 0.907
35 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.041 -1.279 -15.907 16.735
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.004 3.996
3 H 0.061 0.939
4 N -0.317 5.317
5 C -0.063 4.063
6 C -0.015 4.015
7 H 0.129 0.871
8 C -0.075 4.075
9 N -0.154 5.154
10 C -0.006 4.006
11 C -0.564 4.564
12 H 0.075 0.925
13 C -0.140 4.140
14 N -0.531 5.531
15 Si 0.719 3.281
16 H -0.207 1.207
17 H -0.211 1.211
18 H -0.197 1.197
19 C -0.173 4.173
20 C -0.222 4.222
21 C -0.211 4.211
22 H 0.071 0.929
23 H 0.081 0.919
24 H 0.076 0.924
25 H 0.158 0.842
26 H 0.109 0.891
27 H 0.052 0.948
28 H 0.042 0.958
29 H 0.058 0.942
30 H 0.072 0.928
31 H 0.128 0.872
32 H 0.111 0.889
33 H 0.111 0.889
34 H 0.111 0.889
35 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -4.068 -1.881 -15.876 16.496
hybrid contribution 0.734 0.209 0.834 1.130
sum -3.334 -1.672 -15.042 15.498
Atomic orbital electron populations
1.21756 0.94184 1.02449 1.01078 1.21074 0.95940 0.95005 0.87627
0.93888 1.60657 1.33370 1.33495 1.04216 1.22125 1.01621 0.93393
0.89118 1.19332 0.83669 1.01538 0.96994 0.87126 1.29300 0.95141
0.91930 0.91103 1.81002 1.12681 1.10664 1.11083 1.19164 0.98883
0.93754 0.88839 1.21155 1.46594 0.96698 0.91991 0.92495 1.24952
0.95020 0.94876 0.99108 1.69938 1.48301 1.09961 1.24874 0.86590
0.78648 0.80331 0.82508 1.20696 1.21080 1.19702 1.22489 1.03451
0.99823 0.91513 1.23054 0.92608 1.02103 1.04439 1.22890 0.97927
1.03217 0.97024 0.92930 0.91903 0.92361 0.84235 0.89087 0.94805
0.95789 0.94202 0.92807 0.87176 0.88918 0.88918 0.88880 0.88731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.45 9.25 37.16 0.34 -1.10 16
2 C 0.11 1.31 2.84 -67.72 -0.19 1.12 16
3 H 0.04 0.52 7.56 -51.93 -0.39 0.13 16
4 N -0.69 -9.32 6.31 -106.72 -0.67 -9.99 16
5 C 0.07 1.02 4.92 -3.82 -0.02 1.00 16
6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16
7 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16
8 C 0.24 4.95 12.97 -20.78 -0.27 4.68 16
9 N -0.48 -10.51 18.53 42.13 0.78 -9.72 16
10 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16
11 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16
12 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16
13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
14 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16
15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16
16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
19 C -0.15 -1.60 5.11 -90.63 -0.46 -2.06 16
20 C -0.19 -1.78 10.18 -26.73 -0.27 -2.05 16
21 C -0.17 -1.51 9.73 -26.74 -0.26 -1.77 16
22 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16
23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
24 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16
25 H 0.34 4.82 7.43 -39.29 -0.29 4.53 16
26 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16
27 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16
28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16
30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
31 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16
32 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16
33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.09 0.77 7.61 -51.93 -0.39 0.38 16
LS Contribution 298.67 15.07 4.50 4.50
Total: -1.00 -28.98 298.67 -7.11 -36.09
By element:
Atomic # 1 Polarization: 5.64 SS G_CDS: -5.56 Total: 0.08 kcal
Atomic # 6 Polarization: -10.55 SS G_CDS: -1.88 Total: -12.43 kcal
Atomic # 7 Polarization: -45.48 SS G_CDS: 0.84 Total: -44.64 kcal
Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -28.98 -7.11 -36.09 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379652410.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.595 kcal
(2) G-P(sol) polarization free energy of solvation -28.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.614 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds