Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 5 5 C 1.46902 * 110.99800 * 275.00438 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47046 * 304.99696 * 6 5 4 8 8 C 1.47204 * 109.47257 * 64.99983 * 6 5 4 9 9 N 4.90935 * 135.91307 * 112.22175 * 2 1 3 10 10 C 1.52999 * 109.46811 * 184.99853 * 6 5 4 11 11 C 1.50704 * 109.46935 * 175.00197 * 10 6 5 12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 6 13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 6 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11 17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11 18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11 19 19 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 20 20 C 1.52999 * 117.50176 * 128.61919 * 19 2 1 21 21 C 1.52993 * 60.00021 * 252.50838 * 20 19 2 22 22 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 25 25 H 1.00904 * 110.99696 * 151.04867 * 4 2 1 26 26 H 1.08993 * 109.47737 * 60.00169 * 5 4 2 27 27 H 1.09000 * 109.47263 * 299.99731 * 5 4 2 28 28 H 1.09003 * 109.46920 * 294.99990 * 10 6 5 29 29 H 1.08995 * 109.47278 * 54.99923 * 10 6 5 30 30 H 0.97001 * 119.99765 * 179.97438 * 14 13 11 31 31 H 1.09004 * 115.54513 * 274.32709 * 19 2 1 32 32 H 1.08996 * 117.49831 * 0.02562 * 20 19 2 33 33 H 1.09005 * 117.49966 * 145.01626 * 20 19 2 34 34 H 1.09002 * 117.50106 * 252.50655 * 21 20 19 35 35 H 1.09006 * 117.51774 * 107.48217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0823 0.2229 2.3469 6 6 2.5961 -0.5325 3.5743 7 1 1.9709 -1.4078 3.7502 8 6 3.9852 -0.9605 3.3411 9 7 5.0563 -1.2918 3.1620 10 6 2.5438 0.3857 4.7970 11 6 2.9329 -0.3932 6.0271 12 1 3.1912 -1.4386 5.9450 13 6 2.9580 0.2287 7.2575 14 7 2.6430 1.5016 7.3574 15 14 3.4396 -0.7369 8.7823 16 1 4.9081 -0.6450 8.9831 17 1 2.7419 -0.1734 9.9658 18 1 3.0518 -2.1600 8.6100 19 6 2.0400 -0.7213 -1.2491 20 6 3.0741 0.0051 -2.1116 21 6 1.6358 -0.1497 -2.6095 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 2.9173 -1.1204 1.0289 26 1 1.0870 0.6166 2.5525 27 1 2.7587 1.0465 2.1182 28 1 3.2368 1.2155 4.6581 29 1 1.5322 0.7733 4.9172 30 1 2.6603 1.9390 8.2230 31 1 2.1268 -1.8045 -1.1640 32 1 3.3914 0.9967 -1.7889 33 1 3.8417 -0.6002 -2.5940 34 1 1.4569 -0.8568 -3.4196 35 1 1.0061 0.7401 -2.6147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379652410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = 29.503149 kcal Electronic energy + Delta-G solvation = -14614.091274 eV Core-core repulsion = 12226.143039 eV Total energy + Delta-G solvation = -2387.948235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.63446 -36.91168 -34.85064 -33.52310 -31.78359 -29.35816 -26.41899 -24.11742 -22.44716 -22.07096 -21.81861 -19.97970 -16.70436 -16.60480 -16.34248 -15.24614 -14.63331 -14.52350 -13.90441 -13.52004 -13.08692 -12.72870 -12.71019 -12.16608 -12.04231 -11.92135 -11.73792 -11.50609 -11.23169 -11.04826 -10.74053 -10.71402 -10.62094 -10.41813 -10.26796 -10.09978 -9.52100 -9.21466 -8.44976 -8.29923 -6.08930 -4.11969 3.30491 3.36982 3.40539 3.57604 3.62586 3.64959 4.16949 4.42360 4.59903 4.78292 4.82610 4.92282 5.22543 5.29151 5.32076 5.45713 5.47297 5.63531 5.71546 5.74826 5.78033 5.95333 6.02035 6.07107 6.16302 6.35268 6.41776 6.56516 7.18190 7.44182 7.49324 7.54357 7.86265 8.24007 8.41389 8.92629 9.53461 11.02024 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.049481 B = 0.005214 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.743052 B = 5369.153410 C = 5675.031122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.113 3.887 3 H 0.043 0.957 4 N -0.686 5.686 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.111 0.889 8 C 0.242 3.758 9 N -0.477 5.477 10 C 0.032 3.968 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.154 4.154 20 C -0.185 4.185 21 C -0.173 4.173 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.339 0.661 26 H 0.091 0.909 27 H 0.034 0.966 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -1.279 -15.907 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.004 3.996 3 H 0.061 0.939 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.075 4.075 9 N -0.154 5.154 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.173 4.173 20 C -0.222 4.222 21 C -0.211 4.211 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.158 0.842 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.068 -1.881 -15.876 16.496 hybrid contribution 0.734 0.209 0.834 1.130 sum -3.334 -1.672 -15.042 15.498 Atomic orbital electron populations 1.21756 0.94184 1.02449 1.01078 1.21074 0.95940 0.95005 0.87627 0.93888 1.60657 1.33370 1.33495 1.04216 1.22125 1.01621 0.93393 0.89118 1.19332 0.83669 1.01538 0.96994 0.87126 1.29300 0.95141 0.91930 0.91103 1.81002 1.12681 1.10664 1.11083 1.19164 0.98883 0.93754 0.88839 1.21155 1.46594 0.96698 0.91991 0.92495 1.24952 0.95020 0.94876 0.99108 1.69938 1.48301 1.09961 1.24874 0.86590 0.78648 0.80331 0.82508 1.20696 1.21080 1.19702 1.22489 1.03451 0.99823 0.91513 1.23054 0.92608 1.02103 1.04439 1.22890 0.97927 1.03217 0.97024 0.92930 0.91903 0.92361 0.84235 0.89087 0.94805 0.95789 0.94202 0.92807 0.87176 0.88918 0.88918 0.88880 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.25 37.16 0.34 -1.10 16 2 C 0.11 1.31 2.84 -67.72 -0.19 1.12 16 3 H 0.04 0.52 7.56 -51.93 -0.39 0.13 16 4 N -0.69 -9.32 6.31 -106.72 -0.67 -9.99 16 5 C 0.07 1.02 4.92 -3.82 -0.02 1.00 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 7 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 8 C 0.24 4.95 12.97 -20.78 -0.27 4.68 16 9 N -0.48 -10.51 18.53 42.13 0.78 -9.72 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 11 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 12 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.15 -1.60 5.11 -90.63 -0.46 -2.06 16 20 C -0.19 -1.78 10.18 -26.73 -0.27 -2.05 16 21 C -0.17 -1.51 9.73 -26.74 -0.26 -1.77 16 22 H 0.05 0.48 7.29 -51.93 -0.38 0.10 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 25 H 0.34 4.82 7.43 -39.29 -0.29 4.53 16 26 H 0.09 1.30 7.44 -51.93 -0.39 0.91 16 27 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.77 7.61 -51.93 -0.39 0.38 16 LS Contribution 298.67 15.07 4.50 4.50 Total: -1.00 -28.98 298.67 -7.11 -36.09 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.56 Total: 0.08 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.88 Total: -12.43 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 0.84 Total: -44.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.98 -7.11 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.595 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds