Wall clock time and date at job start Mon Mar 30 2020 02:53:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09006 * 109.46764 * 2 1
4 4 N 1.46905 * 109.47136 * 119.99311 * 2 1 3
5 5 C 1.46902 * 110.99800 * 275.00438 * 4 2 1
6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2
7 7 H 1.08992 * 109.47046 * 304.99696 * 6 5 4
8 8 C 1.47204 * 109.47257 * 64.99983 * 6 5 4
9 9 N 4.90935 * 135.91307 * 112.22175 * 2 1 3
10 10 C 1.52999 * 109.46811 * 184.99853 * 6 5 4
11 11 C 1.50704 * 109.46935 * 175.00197 * 10 6 5
12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 6
13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 6
14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11
17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11
18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11
19 19 C 1.52993 * 109.47422 * 239.99764 * 2 1 3
20 20 C 1.52999 * 117.50176 * 128.61919 * 19 2 1
21 21 C 1.52993 * 60.00021 * 252.50838 * 20 19 2
22 22 H 1.09001 * 109.47216 * 60.00583 * 1 2 3
23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47712 * 300.00099 * 1 2 3
25 25 H 1.00904 * 110.99696 * 151.04867 * 4 2 1
26 26 H 1.08993 * 109.47737 * 60.00169 * 5 4 2
27 27 H 1.09000 * 109.47263 * 299.99731 * 5 4 2
28 28 H 1.09003 * 109.46920 * 294.99990 * 10 6 5
29 29 H 1.08995 * 109.47278 * 54.99923 * 10 6 5
30 30 H 0.97001 * 119.99765 * 179.97438 * 14 13 11
31 31 H 1.09004 * 115.54513 * 274.32709 * 19 2 1
32 32 H 1.08996 * 117.49831 * 0.02562 * 20 19 2
33 33 H 1.09005 * 117.49966 * 145.01626 * 20 19 2
34 34 H 1.09002 * 117.50106 * 252.50655 * 21 20 19
35 35 H 1.09006 * 117.51774 * 107.48217 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0197 -0.6924 1.1996
5 6 2.0823 0.2229 2.3469
6 6 2.5961 -0.5325 3.5743
7 1 1.9709 -1.4078 3.7502
8 6 3.9852 -0.9605 3.3411
9 7 5.0563 -1.2918 3.1620
10 6 2.5438 0.3857 4.7970
11 6 2.9329 -0.3932 6.0271
12 1 3.1912 -1.4386 5.9450
13 6 2.9580 0.2287 7.2575
14 7 2.6430 1.5016 7.3574
15 14 3.4396 -0.7369 8.7823
16 1 4.9081 -0.6450 8.9831
17 1 2.7419 -0.1734 9.9658
18 1 3.0518 -2.1600 8.6100
19 6 2.0400 -0.7213 -1.2491
20 6 3.0741 0.0051 -2.1116
21 6 1.6358 -0.1497 -2.6095
22 1 -0.3634 0.5137 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8899
25 1 2.9173 -1.1204 1.0289
26 1 1.0870 0.6166 2.5525
27 1 2.7587 1.0465 2.1182
28 1 3.2368 1.2155 4.6581
29 1 1.5322 0.7733 4.9172
30 1 2.6603 1.9390 8.2230
31 1 2.1268 -1.8045 -1.1640
32 1 3.3914 0.9967 -1.7889
33 1 3.8417 -0.6002 -2.5940
34 1 1.4569 -0.8568 -3.4196
35 1 1.0061 0.7401 -2.6147
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379652410.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:12
Heat of formation + Delta-G solvation = 12.644479 kcal
Electronic energy + Delta-G solvation = -14614.822321 eV
Core-core repulsion = 12226.143039 eV
Total energy + Delta-G solvation = -2388.679282 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 222.143 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.62246 -38.30958 -36.19105 -35.30734 -33.42194 -30.57141 -28.05507 -25.37934
-23.67825 -23.24934 -23.08545 -20.86288 -18.52994 -18.24376 -17.39882 -16.66725
-16.22754 -15.44800 -15.17716 -14.83249 -14.59451 -14.28582 -13.95192 -13.79136
-13.51375 -13.11976 -12.96919 -12.79298 -12.68436 -12.48271 -12.32757 -12.21555
-12.00813 -11.61317 -11.47831 -11.27639 -11.06475 -10.86094 -10.55803 -9.39542
-8.19695 -6.28058 1.40306 1.42197 1.51799 1.93270 1.95606 2.41539
2.85485 3.15317 3.17007 3.24425 3.77148 4.02291 4.12977 4.19358
4.35935 4.40489 4.46859 4.69786 4.74873 4.77918 4.88593 4.94222
5.01839 5.05747 5.18015 5.24898 5.31641 5.46645 5.50675 5.62091
5.79005 6.08356 6.21962 6.36846 6.74208 6.86774 7.40592 8.91344
Molecular weight = 222.14amu
Principal moments of inertia in cm(-1)
A = 0.049481 B = 0.005214 C = 0.004933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 565.743052 B = 5369.153410 C = 5675.031122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.112 3.888
3 H 0.040 0.960
4 N -0.685 5.685
5 C 0.079 3.921
6 C 0.019 3.981
7 H 0.123 0.877
8 C 0.251 3.749
9 N -0.504 5.504
10 C 0.038 3.962
11 C -0.540 4.540
12 H 0.054 0.946
13 C 0.012 3.988
14 N -0.924 5.924
15 Si 0.949 3.051
16 H -0.284 1.284
17 H -0.278 1.278
18 H -0.264 1.264
19 C -0.166 4.166
20 C -0.191 4.191
21 C -0.157 4.157
22 H 0.069 0.931
23 H 0.059 0.941
24 H 0.052 0.948
25 H 0.335 0.665
26 H 0.103 0.897
27 H 0.030 0.970
28 H 0.000 1.000
29 H 0.037 0.963
30 H 0.264 0.736
31 H 0.106 0.894
32 H 0.088 0.912
33 H 0.097 0.903
34 H 0.106 0.894
35 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.744 -1.842 -16.764 17.816
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.003 3.997
3 H 0.058 0.942
4 N -0.316 5.316
5 C -0.051 4.051
6 C -0.003 4.003
7 H 0.141 0.859
8 C -0.065 4.065
9 N -0.181 5.181
10 C -0.001 4.001
11 C -0.578 4.578
12 H 0.072 0.928
13 C -0.187 4.187
14 N -0.564 5.564
15 Si 0.774 3.226
16 H -0.210 1.210
17 H -0.203 1.203
18 H -0.188 1.188
19 C -0.184 4.184
20 C -0.228 4.228
21 C -0.194 4.194
22 H 0.088 0.912
23 H 0.078 0.922
24 H 0.071 0.929
25 H 0.153 0.847
26 H 0.122 0.878
27 H 0.048 0.952
28 H 0.018 0.982
29 H 0.055 0.945
30 H 0.073 0.927
31 H 0.124 0.876
32 H 0.107 0.893
33 H 0.115 0.885
34 H 0.124 0.876
35 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -4.779 -2.452 -16.747 17.587
hybrid contribution 0.954 0.395 1.063 1.482
sum -3.825 -2.057 -15.684 16.274
Atomic orbital electron populations
1.21740 0.93252 1.02436 1.01710 1.21142 0.96600 0.94721 0.87228
0.94225 1.60667 1.33067 1.33250 1.04653 1.21960 1.01906 0.92912
0.88365 1.19226 0.83014 1.01267 0.96752 0.85925 1.29626 0.95322
0.91195 0.90313 1.81001 1.13452 1.11643 1.12044 1.18989 0.97738
0.93484 0.89850 1.21563 1.45986 0.96872 0.93387 0.92758 1.25715
0.95234 0.95747 1.02025 1.70031 1.49492 1.11251 1.25596 0.85687
0.77984 0.79463 0.79425 1.20993 1.20305 1.18824 1.22413 1.04687
0.99510 0.91802 1.23104 0.93353 1.01862 1.04508 1.22979 0.97038
1.03401 0.96028 0.91207 0.92190 0.92868 0.84700 0.87846 0.95187
0.98200 0.94524 0.92692 0.87589 0.89335 0.88454 0.87566 0.87947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.55 9.25 71.98 0.67 -1.89 16
2 C 0.11 2.42 2.84 44.91 0.13 2.55 16
3 H 0.04 0.89 7.56 -2.38 -0.02 0.88 16
4 N -0.69 -17.71 6.31 -491.56 -3.10 -20.81 16
5 C 0.08 2.30 4.92 86.31 0.42 2.72 16
6 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16
7 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16
8 C 0.25 10.17 12.97 89.45 1.16 11.33 16
9 N -0.50 -22.00 18.53 20.00 0.37 -21.63 16
10 C 0.04 1.78 4.42 29.85 0.13 1.91 16
11 C -0.54 -28.84 8.60 25.60 0.22 -28.62 16
12 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16
13 C 0.01 0.65 5.46 84.66 0.46 1.11 16
14 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16
15 Si 0.95 43.61 29.54 68.60 2.03 45.64 16
16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16
17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16
18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16
19 C -0.17 -3.15 5.11 -10.80 -0.06 -3.20 16
20 C -0.19 -3.38 10.18 30.59 0.31 -3.07 16
21 C -0.16 -2.35 9.73 30.59 0.30 -2.05 16
22 H 0.07 1.09 7.29 -2.39 -0.02 1.07 16
23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
24 H 0.05 1.06 7.45 -2.39 -0.02 1.05 16
25 H 0.34 9.18 7.43 -89.69 -0.67 8.52 16
26 H 0.10 2.79 7.44 -2.39 -0.02 2.78 16
27 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16
28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16
29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16
30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16
31 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16
32 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16
33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16
34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.10 1.38 7.61 -2.38 -0.02 1.37 16
Total: -1.00 -60.37 298.67 3.70 -56.67
By element:
Atomic # 1 Polarization: 11.31 SS G_CDS: 0.40 Total: 11.70 kcal
Atomic # 6 Polarization: -22.25 SS G_CDS: 3.72 Total: -18.54 kcal
Atomic # 7 Polarization: -93.03 SS G_CDS: -2.44 Total: -95.47 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -60.37 3.70 -56.67 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379652410.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal
(2) G-P(sol) polarization free energy of solvation -60.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds