Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46764 * 2 1 4 4 N 1.46905 * 109.47136 * 119.99311 * 2 1 3 5 5 C 1.46902 * 110.99800 * 275.00438 * 4 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47046 * 304.99696 * 6 5 4 8 8 C 1.47204 * 109.47257 * 64.99983 * 6 5 4 9 9 N 4.90935 * 135.91307 * 112.22175 * 2 1 3 10 10 C 1.52999 * 109.46811 * 184.99853 * 6 5 4 11 11 C 1.50704 * 109.46935 * 175.00197 * 10 6 5 12 12 H 1.08000 * 120.00086 * 359.97438 * 11 10 6 13 13 C 1.37884 * 119.99742 * 180.02562 * 11 10 6 14 14 N 1.31510 * 119.99866 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99621 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46857 * 90.00130 * 15 13 11 17 17 H 1.48499 * 109.46841 * 209.99998 * 15 13 11 18 18 H 1.48498 * 109.47151 * 330.00350 * 15 13 11 19 19 C 1.52993 * 109.47422 * 239.99764 * 2 1 3 20 20 C 1.52999 * 117.50176 * 128.61919 * 19 2 1 21 21 C 1.52993 * 60.00021 * 252.50838 * 20 19 2 22 22 H 1.09001 * 109.47216 * 60.00583 * 1 2 3 23 23 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47712 * 300.00099 * 1 2 3 25 25 H 1.00904 * 110.99696 * 151.04867 * 4 2 1 26 26 H 1.08993 * 109.47737 * 60.00169 * 5 4 2 27 27 H 1.09000 * 109.47263 * 299.99731 * 5 4 2 28 28 H 1.09003 * 109.46920 * 294.99990 * 10 6 5 29 29 H 1.08995 * 109.47278 * 54.99923 * 10 6 5 30 30 H 0.97001 * 119.99765 * 179.97438 * 14 13 11 31 31 H 1.09004 * 115.54513 * 274.32709 * 19 2 1 32 32 H 1.08996 * 117.49831 * 0.02562 * 20 19 2 33 33 H 1.09005 * 117.49966 * 145.01626 * 20 19 2 34 34 H 1.09002 * 117.50106 * 252.50655 * 21 20 19 35 35 H 1.09006 * 117.51774 * 107.48217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 2.0823 0.2229 2.3469 6 6 2.5961 -0.5325 3.5743 7 1 1.9709 -1.4078 3.7502 8 6 3.9852 -0.9605 3.3411 9 7 5.0563 -1.2918 3.1620 10 6 2.5438 0.3857 4.7970 11 6 2.9329 -0.3932 6.0271 12 1 3.1912 -1.4386 5.9450 13 6 2.9580 0.2287 7.2575 14 7 2.6430 1.5016 7.3574 15 14 3.4396 -0.7369 8.7823 16 1 4.9081 -0.6450 8.9831 17 1 2.7419 -0.1734 9.9658 18 1 3.0518 -2.1600 8.6100 19 6 2.0400 -0.7213 -1.2491 20 6 3.0741 0.0051 -2.1116 21 6 1.6358 -0.1497 -2.6095 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 2.9173 -1.1204 1.0289 26 1 1.0870 0.6166 2.5525 27 1 2.7587 1.0465 2.1182 28 1 3.2368 1.2155 4.6581 29 1 1.5322 0.7733 4.9172 30 1 2.6603 1.9390 8.2230 31 1 2.1268 -1.8045 -1.1640 32 1 3.3914 0.9967 -1.7889 33 1 3.8417 -0.6002 -2.5940 34 1 1.4569 -0.8568 -3.4196 35 1 1.0061 0.7401 -2.6147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379652410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = 12.644479 kcal Electronic energy + Delta-G solvation = -14614.822321 eV Core-core repulsion = 12226.143039 eV Total energy + Delta-G solvation = -2388.679282 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.62246 -38.30958 -36.19105 -35.30734 -33.42194 -30.57141 -28.05507 -25.37934 -23.67825 -23.24934 -23.08545 -20.86288 -18.52994 -18.24376 -17.39882 -16.66725 -16.22754 -15.44800 -15.17716 -14.83249 -14.59451 -14.28582 -13.95192 -13.79136 -13.51375 -13.11976 -12.96919 -12.79298 -12.68436 -12.48271 -12.32757 -12.21555 -12.00813 -11.61317 -11.47831 -11.27639 -11.06475 -10.86094 -10.55803 -9.39542 -8.19695 -6.28058 1.40306 1.42197 1.51799 1.93270 1.95606 2.41539 2.85485 3.15317 3.17007 3.24425 3.77148 4.02291 4.12977 4.19358 4.35935 4.40489 4.46859 4.69786 4.74873 4.77918 4.88593 4.94222 5.01839 5.05747 5.18015 5.24898 5.31641 5.46645 5.50675 5.62091 5.79005 6.08356 6.21962 6.36846 6.74208 6.86774 7.40592 8.91344 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.049481 B = 0.005214 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.743052 B = 5369.153410 C = 5675.031122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 H 0.040 0.960 4 N -0.685 5.685 5 C 0.079 3.921 6 C 0.019 3.981 7 H 0.123 0.877 8 C 0.251 3.749 9 N -0.504 5.504 10 C 0.038 3.962 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.284 1.284 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.166 4.166 20 C -0.191 4.191 21 C -0.157 4.157 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.335 0.665 26 H 0.103 0.897 27 H 0.030 0.970 28 H 0.000 1.000 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -1.842 -16.764 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.003 3.997 3 H 0.058 0.942 4 N -0.316 5.316 5 C -0.051 4.051 6 C -0.003 4.003 7 H 0.141 0.859 8 C -0.065 4.065 9 N -0.181 5.181 10 C -0.001 4.001 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.210 1.210 17 H -0.203 1.203 18 H -0.188 1.188 19 C -0.184 4.184 20 C -0.228 4.228 21 C -0.194 4.194 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.153 0.847 26 H 0.122 0.878 27 H 0.048 0.952 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.779 -2.452 -16.747 17.587 hybrid contribution 0.954 0.395 1.063 1.482 sum -3.825 -2.057 -15.684 16.274 Atomic orbital electron populations 1.21740 0.93252 1.02436 1.01710 1.21142 0.96600 0.94721 0.87228 0.94225 1.60667 1.33067 1.33250 1.04653 1.21960 1.01906 0.92912 0.88365 1.19226 0.83014 1.01267 0.96752 0.85925 1.29626 0.95322 0.91195 0.90313 1.81001 1.13452 1.11643 1.12044 1.18989 0.97738 0.93484 0.89850 1.21563 1.45986 0.96872 0.93387 0.92758 1.25715 0.95234 0.95747 1.02025 1.70031 1.49492 1.11251 1.25596 0.85687 0.77984 0.79463 0.79425 1.20993 1.20305 1.18824 1.22413 1.04687 0.99510 0.91802 1.23104 0.93353 1.01862 1.04508 1.22979 0.97038 1.03401 0.96028 0.91207 0.92190 0.92868 0.84700 0.87846 0.95187 0.98200 0.94524 0.92692 0.87589 0.89335 0.88454 0.87566 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.25 71.98 0.67 -1.89 16 2 C 0.11 2.42 2.84 44.91 0.13 2.55 16 3 H 0.04 0.89 7.56 -2.38 -0.02 0.88 16 4 N -0.69 -17.71 6.31 -491.56 -3.10 -20.81 16 5 C 0.08 2.30 4.92 86.31 0.42 2.72 16 6 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 7 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 8 C 0.25 10.17 12.97 89.45 1.16 11.33 16 9 N -0.50 -22.00 18.53 20.00 0.37 -21.63 16 10 C 0.04 1.78 4.42 29.85 0.13 1.91 16 11 C -0.54 -28.84 8.60 25.60 0.22 -28.62 16 12 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 13 C 0.01 0.65 5.46 84.66 0.46 1.11 16 14 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 15 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 C -0.17 -3.15 5.11 -10.80 -0.06 -3.20 16 20 C -0.19 -3.38 10.18 30.59 0.31 -3.07 16 21 C -0.16 -2.35 9.73 30.59 0.30 -2.05 16 22 H 0.07 1.09 7.29 -2.39 -0.02 1.07 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.06 7.45 -2.39 -0.02 1.05 16 25 H 0.34 9.18 7.43 -89.69 -0.67 8.52 16 26 H 0.10 2.79 7.44 -2.39 -0.02 2.78 16 27 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.38 7.61 -2.38 -0.02 1.37 16 Total: -1.00 -60.37 298.67 3.70 -56.67 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.40 Total: 11.70 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.72 Total: -18.54 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -2.44 Total: -95.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -60.37 3.70 -56.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -60.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds