Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 N 1.46901 * 109.47098 * 119.99912 * 2 1 3 5 5 C 1.46895 * 111.00119 * 275.00178 * 4 2 1 6 6 C 1.52994 * 109.47270 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.47154 * 54.99975 * 6 5 4 8 8 C 1.47200 * 109.47451 * 295.00037 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13685 * 2 1 3 10 10 C 1.52996 * 109.47347 * 174.99819 * 6 5 4 11 11 C 1.50702 * 109.47159 * 185.00014 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.53000 * 109.47193 * 240.00452 * 2 1 3 20 20 C 1.53000 * 117.50319 * 128.62248 * 19 2 1 21 21 C 1.53000 * 117.50136 * 59.99758 * 19 2 1 22 22 H 1.08994 * 109.47003 * 299.99920 * 1 2 3 23 23 H 1.08998 * 109.46661 * 60.00225 * 1 2 3 24 24 H 1.08995 * 109.46764 * 179.97438 * 1 2 3 25 25 H 1.00903 * 110.99388 * 151.04616 * 4 2 1 26 26 H 1.08998 * 109.47324 * 59.99878 * 5 4 2 27 27 H 1.09002 * 109.47421 * 300.00055 * 5 4 2 28 28 H 1.09004 * 109.47066 * 65.00217 * 10 6 5 29 29 H 1.08994 * 109.47405 * 305.00047 * 10 6 5 30 30 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 31 31 H 1.09007 * 115.54449 * 274.32771 * 19 2 1 32 32 H 1.09000 * 117.49577 * 359.97438 * 20 19 2 33 33 H 1.08998 * 117.50183 * 145.01445 * 20 19 2 34 34 H 1.09000 * 117.49611 * 214.98106 * 21 19 2 35 35 H 1.08998 * 117.49878 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 1 3.5507 -1.0020 3.3397 8 6 1.6208 -1.5689 3.9552 9 7 0.8704 -2.3687 4.2492 10 6 2.7789 0.4456 4.7359 11 6 3.3988 -0.2740 5.9059 12 1 3.6380 -1.3244 5.8288 13 6 3.6662 0.4100 7.0729 14 7 3.3752 1.6891 7.1668 15 14 4.4416 -0.4803 8.5205 16 1 4.6696 -1.9032 8.1621 17 1 5.7390 0.1589 8.8574 18 1 3.5331 -0.4041 9.6928 19 6 2.0401 -0.7211 -1.2493 20 6 3.0742 0.0052 -2.1117 21 6 1.6358 -0.1494 -2.6096 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 2.9174 -1.1205 1.0287 26 1 1.0871 0.6163 2.5525 27 1 2.7588 1.0462 2.1183 28 1 1.8092 0.8479 5.0291 29 1 3.4313 1.2611 4.4240 30 1 3.5630 2.1702 7.9879 31 1 2.1268 -1.8044 -1.1642 32 1 3.3909 0.9971 -1.7893 33 1 3.8417 -0.6000 -2.5941 34 1 1.4569 -0.8565 -3.4197 35 1 1.0061 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379652430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = 12.174090 kcal Electronic energy + Delta-G solvation = -14603.381516 eV Core-core repulsion = 12214.681837 eV Total energy + Delta-G solvation = -2388.699679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55669 -38.21912 -36.15452 -35.27464 -33.39708 -30.58146 -28.08515 -25.36294 -23.63955 -23.20501 -23.02803 -20.85766 -18.62200 -18.38383 -17.12206 -16.51876 -16.09527 -15.52922 -15.14515 -15.01203 -14.50665 -14.15868 -13.94096 -13.68212 -13.42819 -13.16502 -13.01792 -12.80392 -12.68171 -12.49412 -12.33423 -12.20150 -11.91685 -11.63665 -11.43442 -11.24767 -11.02532 -10.82878 -10.55747 -9.30857 -8.19641 -6.27858 1.39351 1.42499 1.53020 2.07892 2.14758 2.41773 2.90327 3.15668 3.19821 3.36500 3.82134 4.07096 4.17630 4.22260 4.36514 4.40883 4.53030 4.67819 4.77513 4.79286 4.84813 4.91224 5.03225 5.07659 5.13674 5.31727 5.33886 5.42739 5.47110 5.61982 5.79390 6.10954 6.23377 6.57671 6.83485 6.93959 7.40936 8.91594 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.045185 B = 0.005173 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.531119 B = 5411.541418 C = 5598.492024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 H 0.049 0.951 4 N -0.695 5.695 5 C 0.079 3.921 6 C 0.020 3.980 7 H 0.120 0.880 8 C 0.266 3.734 9 N -0.515 5.515 10 C 0.037 3.963 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.285 1.285 19 C -0.163 4.163 20 C -0.178 4.178 21 C -0.168 4.168 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.048 0.952 25 H 0.350 0.650 26 H 0.066 0.934 27 H 0.065 0.935 28 H -0.001 1.001 29 H 0.036 0.964 30 H 0.264 0.736 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -0.326 -18.312 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.067 0.933 4 N -0.328 5.328 5 C -0.051 4.051 6 C -0.001 4.001 7 H 0.138 0.862 8 C -0.050 4.050 9 N -0.193 5.193 10 C -0.002 4.002 11 C -0.577 4.577 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.212 1.212 19 C -0.182 4.182 20 C -0.215 4.215 21 C -0.206 4.206 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.170 0.830 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.364 -1.641 -17.592 17.721 hybrid contribution 1.245 0.512 0.926 1.634 sum -0.119 -1.129 -16.666 16.705 Atomic orbital electron populations 1.21760 0.94880 1.01610 1.01199 1.21052 0.95414 0.95248 0.87477 0.93348 1.60514 1.34261 1.33637 1.04390 1.21894 1.01259 0.93696 0.88259 1.19179 0.93942 0.90754 0.96269 0.86210 1.29340 0.92857 0.92806 0.90004 1.80949 1.12861 1.13248 1.12205 1.18996 0.96423 0.93800 0.90946 1.21594 1.40681 0.96216 0.99177 0.92737 1.25718 0.96261 0.95519 1.01263 1.70043 1.48951 1.09315 1.28115 0.85630 0.78420 0.79049 0.79389 1.19344 1.19749 1.21160 1.22349 1.05005 0.99442 0.91383 1.23110 0.92786 1.02005 1.03561 1.22981 0.97985 1.03366 0.96262 0.94010 0.91013 0.93280 0.83008 0.91536 0.91651 0.98210 0.94610 0.92716 0.87679 0.88726 0.88010 0.87951 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.26 71.98 0.67 -2.34 16 2 C 0.12 2.47 2.85 44.92 0.13 2.59 16 3 H 0.05 1.00 7.56 -2.39 -0.02 0.98 16 4 N -0.70 -17.33 6.01 -491.58 -2.95 -20.29 16 5 C 0.08 2.27 4.85 86.30 0.42 2.69 16 6 C 0.02 0.73 2.35 -12.60 -0.03 0.70 16 7 H 0.12 3.85 8.14 -2.38 -0.02 3.83 16 8 C 0.27 11.16 13.67 89.45 1.22 12.38 16 9 N -0.52 -23.71 18.53 20.00 0.37 -23.34 16 10 C 0.04 1.72 4.42 29.85 0.13 1.85 16 11 C -0.54 -28.67 8.60 25.60 0.22 -28.45 16 12 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 13 C 0.01 0.62 5.46 84.66 0.46 1.08 16 14 N -0.92 -53.26 13.29 21.45 0.28 -52.97 16 15 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 C -0.16 -2.86 5.11 -10.79 -0.06 -2.92 16 20 C -0.18 -2.61 10.18 30.59 0.31 -2.30 16 21 C -0.17 -2.41 9.74 30.59 0.30 -2.12 16 22 H 0.04 1.02 7.45 -2.39 -0.02 1.00 16 23 H 0.07 1.27 7.29 -2.39 -0.02 1.26 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.35 7.76 8.36 -89.69 -0.75 7.01 16 26 H 0.07 2.05 7.43 -2.39 -0.02 2.03 16 27 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 28 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.33 7.61 -2.39 -0.02 1.31 16 Total: -1.00 -62.51 299.85 3.82 -58.69 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.31 Total: 9.14 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 3.77 Total: -16.82 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -2.30 Total: -96.60 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -62.51 3.82 -58.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379652430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.866 kcal (2) G-P(sol) polarization free energy of solvation -62.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds