Wall clock time and date at job start Mon Mar 30 2020 02:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 N 1.46894 * 109.47121 * 120.00429 * 2 1 3 5 5 C 1.46895 * 111.00222 * 274.11275 * 4 2 1 6 6 H 1.09009 * 109.46868 * 32.53504 * 5 4 2 7 7 C 1.53004 * 109.47372 * 152.53119 * 5 4 2 8 8 C 1.50697 * 109.47298 * 272.53403 * 5 4 2 9 9 H 1.07990 * 120.00138 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99866 * 180.27229 * 8 5 4 11 11 N 1.31517 * 120.00283 * 359.72810 * 10 8 5 12 12 Si 1.86804 * 119.99943 * 179.72448 * 10 8 5 13 13 H 1.48493 * 109.46788 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46911 * 120.00077 * 12 10 8 15 15 H 1.48501 * 109.47026 * 239.99917 * 12 10 8 16 16 C 1.50708 * 109.47070 * 240.00609 * 2 1 3 17 17 C 1.40886 * 126.28626 * 279.69214 * 16 2 1 18 18 C 1.34852 * 107.41208 * 179.83237 * 17 16 2 19 19 N 1.36336 * 108.22032 * 0.42517 * 18 17 16 20 20 C 1.46500 * 125.63643 * 179.76026 * 19 18 17 21 21 C 1.34843 * 126.29315 * 100.00026 * 16 2 1 22 22 H 1.09002 * 109.47175 * 176.13447 * 1 2 3 23 23 H 1.08998 * 109.46919 * 296.13843 * 1 2 3 24 24 H 1.09001 * 109.47044 * 56.13207 * 1 2 3 25 25 H 1.00903 * 111.00102 * 38.06777 * 4 2 1 26 26 H 1.09004 * 109.47123 * 300.58230 * 7 5 4 27 27 H 1.09004 * 109.46787 * 60.58073 * 7 5 4 28 28 H 1.08997 * 109.47706 * 180.58241 * 7 5 4 29 29 H 0.96997 * 120.00354 * 179.97438 * 11 10 8 30 30 H 1.07999 * 126.29782 * 359.95658 * 17 16 2 31 31 H 1.08006 * 125.89004 * 180.15791 * 18 17 16 32 32 H 1.09000 * 109.47607 * 269.95866 * 20 19 18 33 33 H 1.08998 * 109.47073 * 29.96190 * 20 19 18 34 34 H 1.09008 * 109.46793 * 149.96132 * 20 19 18 35 35 H 1.08004 * 125.88841 * 359.97438 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.1024 0.2274 2.3416 6 1 1.3125 0.9746 2.2643 7 6 1.9347 -0.5592 3.6432 8 6 3.4444 0.9129 2.3383 9 1 4.1640 0.6875 1.5653 10 6 3.7558 1.8234 3.3257 11 7 2.8797 2.0976 4.2675 12 14 5.4223 2.6675 3.3260 13 1 6.2195 2.1893 2.1681 14 1 5.2329 4.1368 3.2230 15 1 6.1388 2.3480 4.5868 16 6 2.0323 -0.7103 -1.2306 17 6 2.1300 -2.1047 -1.4070 18 6 2.6211 -2.3215 -2.6441 19 7 2.8391 -1.1120 -3.2342 20 6 3.3740 -0.9039 -4.5821 21 6 2.4763 -0.1281 -2.3629 22 1 -0.3634 -1.0253 -0.0693 23 1 -0.3633 0.4527 0.9226 24 1 -0.3633 0.5727 -0.8533 25 1 1.4410 -1.4897 1.4182 26 1 0.9683 -1.0634 3.6411 27 1 2.7306 -1.2995 3.7254 28 1 1.9858 0.1247 4.4903 29 1 3.0989 2.7379 4.9623 30 1 1.8593 -2.8610 -0.6851 31 1 2.8130 -3.2868 -3.0889 32 1 4.4609 -0.8377 -4.5356 33 1 3.0879 -1.7404 -5.2197 34 1 2.9710 0.0214 -4.9941 35 1 2.5341 0.9344 -2.5479 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393668893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:38 Heat of formation + Delta-G solvation = 30.039322 kcal Electronic energy + Delta-G solvation = -15174.079622 eV Core-core repulsion = 12786.154637 eV Total energy + Delta-G solvation = -2387.924985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.87925 -38.17370 -35.23049 -33.41409 -31.88180 -29.45209 -28.35729 -27.21819 -26.92874 -23.37758 -22.23291 -20.80169 -20.00691 -18.20862 -17.76184 -16.75370 -15.97450 -15.65726 -15.42048 -15.07532 -14.63853 -14.21061 -13.80337 -13.53879 -13.41567 -13.21325 -13.05702 -12.88192 -12.83000 -12.58073 -12.52598 -12.21712 -11.94318 -11.81507 -11.50571 -11.09489 -10.47781 -9.15832 -8.91574 -8.75628 -8.04857 -6.15867 1.39888 1.41407 1.50885 1.54341 2.25233 2.30458 2.45785 3.20601 3.81879 4.13859 4.30383 4.39009 4.43837 4.51169 4.52791 4.64396 4.75980 4.83351 4.91014 4.97719 5.03619 5.07563 5.17295 5.25865 5.45991 5.58334 5.73179 5.77127 5.91856 6.20889 6.39467 6.47349 6.62830 6.73895 6.99645 7.10387 7.53590 8.99361 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.007503 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.402705 B = 3730.937865 C = 4305.412556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.047 0.953 4 N -0.676 5.676 5 C 0.216 3.784 6 H -0.027 1.027 7 C -0.132 4.132 8 C -0.504 4.504 9 H 0.044 0.956 10 C 0.007 3.993 11 N -0.923 5.923 12 Si 0.956 3.044 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.278 1.278 16 C -0.157 4.157 17 C -0.204 4.204 18 C -0.020 4.020 19 N -0.456 5.456 20 C 0.071 3.929 21 C -0.036 4.036 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.325 0.675 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.260 0.740 30 H 0.128 0.872 31 H 0.189 0.811 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 -6.333 -15.878 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.065 0.935 4 N -0.306 5.306 5 C 0.108 3.892 6 H -0.009 1.009 7 C -0.191 4.191 8 C -0.543 4.543 9 H 0.062 0.938 10 C -0.190 4.190 11 N -0.564 5.564 12 Si 0.782 3.218 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.164 4.164 17 C -0.229 4.229 18 C -0.150 4.150 19 N -0.132 5.132 20 C -0.070 4.070 21 C -0.166 4.166 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.142 0.858 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.206 0.794 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.875 -6.087 -16.260 17.384 hybrid contribution -0.153 0.808 0.769 1.126 sum -1.028 -5.279 -15.490 16.398 Atomic orbital electron populations 1.22307 0.96446 1.01966 1.00963 1.19626 0.92052 0.95431 0.88019 0.93508 1.60558 1.55691 1.10038 1.04275 1.18952 0.94191 0.89274 0.86782 1.00936 1.21776 0.97319 0.98927 1.01044 1.21457 1.01026 1.21913 1.09900 0.93750 1.25688 1.00435 0.97555 0.95337 1.70011 1.36060 1.35386 1.14925 0.85538 0.80282 0.78143 0.77841 1.19851 1.20504 1.20414 1.19511 1.07350 0.94668 0.94871 1.20788 1.09426 0.95271 0.97416 1.22147 1.07958 0.89997 0.94930 1.44095 1.49525 1.05471 1.14066 1.22231 1.00001 1.05068 0.79654 1.21685 1.08745 0.94433 0.91724 0.91881 0.94382 0.91695 0.85821 0.95028 0.94952 0.91893 0.93070 0.85445 0.79424 0.90665 0.87852 0.88942 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.13 71.98 0.66 -4.87 16 2 C 0.16 6.56 2.83 44.17 0.12 6.68 16 3 H 0.05 2.20 7.71 -2.39 -0.02 2.18 16 4 N -0.68 -30.86 5.81 -477.16 -2.77 -33.63 16 5 C 0.22 11.54 2.40 44.17 0.11 11.64 16 6 H -0.03 -1.57 7.17 -2.38 -0.02 -1.58 16 7 C -0.13 -6.69 8.93 71.98 0.64 -6.05 16 8 C -0.50 -29.63 8.63 25.60 0.22 -29.41 16 9 H 0.04 2.70 7.81 -2.92 -0.02 2.68 16 10 C 0.01 0.43 5.30 84.65 0.45 0.88 16 11 N -0.92 -54.86 11.32 21.45 0.24 -54.62 16 12 Si 0.96 45.86 29.54 68.60 2.03 47.88 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 C -0.16 -5.72 5.12 -19.99 -0.10 -5.82 16 17 C -0.20 -6.71 10.52 22.14 0.23 -6.47 16 18 C -0.02 -0.54 11.43 83.21 0.95 0.41 16 19 N -0.46 -11.54 3.15 -547.90 -1.72 -13.27 16 20 C 0.07 1.03 11.12 127.77 1.42 2.45 16 21 C -0.04 -1.13 11.35 83.21 0.94 -0.18 16 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.42 7.49 -2.39 -0.02 1.40 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.32 13.49 8.04 -89.69 -0.72 12.77 16 26 H 0.03 1.37 8.11 -2.38 -0.02 1.35 16 27 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 29 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.16 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -68.10 291.64 3.75 -64.34 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.33 Total: 20.03 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.65 Total: -30.73 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -4.25 Total: -101.52 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.10 3.75 -64.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393668893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.382 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds