Wall clock time and date at job start Mon Mar 30 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47180 * 2 1 4 4 C 1.47199 * 109.47220 * 120.00461 * 2 1 3 5 5 N 2.60798 * 109.47106 * 120.00175 * 2 1 3 6 6 C 1.53003 * 109.47069 * 240.00188 * 2 1 3 7 7 H 1.09002 * 109.47063 * 299.99637 * 6 2 1 8 8 C 1.52998 * 109.47211 * 180.02562 * 6 2 1 9 9 N 1.46893 * 109.47100 * 59.99831 * 6 2 1 10 10 C 1.46905 * 111.00233 * 204.99977 * 9 6 2 11 11 C 1.52990 * 109.47499 * 185.21947 * 10 9 6 12 12 C 1.50709 * 115.54972 * 320.27412 * 11 10 9 13 13 H 1.07999 * 119.99671 * 99.49367 * 12 11 10 14 14 C 1.37874 * 119.99942 * 279.49446 * 12 11 10 15 15 N 1.31513 * 120.00485 * 355.02189 * 14 12 11 16 16 Si 1.86806 * 119.99614 * 175.01827 * 14 12 11 17 17 H 1.48488 * 109.47352 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46716 * 120.00405 * 16 14 12 19 19 H 1.48500 * 109.46778 * 239.99793 * 16 14 12 20 20 C 1.53001 * 117.50148 * 174.60863 * 11 10 9 21 21 C 1.52991 * 60.03172 * 252.49407 * 20 11 10 22 22 H 1.08997 * 109.47367 * 299.99997 * 1 2 3 23 23 H 1.08999 * 109.47180 * 60.00150 * 1 2 3 24 24 H 1.09006 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47509 * 179.97438 * 8 6 2 26 26 H 1.09006 * 109.46772 * 300.00041 * 8 6 2 27 27 H 1.08999 * 109.47397 * 59.99442 * 8 6 2 28 28 H 1.00900 * 111.00535 * 328.95532 * 9 6 2 29 29 H 1.09000 * 109.47113 * 65.21207 * 10 9 6 30 30 H 1.09004 * 109.46751 * 305.21941 * 10 9 6 31 31 H 0.96995 * 120.00057 * 184.99886 * 15 14 12 32 32 H 1.08998 * 117.50026 * 359.97438 * 20 11 10 33 33 H 1.09004 * 117.50037 * 144.98918 * 20 11 10 34 34 H 1.09008 * 117.50057 * 107.49986 * 21 20 11 35 35 H 1.09006 * 117.50267 * 252.52041 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0206 -0.6940 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0400 -0.7212 -1.2493 7 1 1.6767 -1.7489 -1.2493 8 6 3.5699 -0.7218 -1.2490 9 7 1.5503 -0.0287 -2.4486 10 6 1.4875 -0.9438 -3.5962 11 6 1.0995 -0.1610 -4.8521 12 6 0.0487 0.9015 -4.6571 13 1 0.3397 1.9366 -4.5551 14 6 -1.2842 0.5522 -4.6089 15 7 -1.6463 -0.6925 -4.8304 16 14 -2.5759 1.8471 -4.2287 17 1 -1.9142 3.1598 -4.0194 18 1 -3.5263 1.9467 -5.3653 19 1 -3.3140 1.4636 -2.9985 20 6 1.1035 -0.9146 -6.1837 21 6 2.1978 0.1115 -5.8830 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.9333 -1.2360 -2.1387 26 1 3.9336 0.3058 -1.2487 27 1 3.9330 -1.2358 -0.3590 28 1 0.6526 0.3993 -2.2780 29 1 0.7424 -1.7160 -3.4047 30 1 2.4624 -1.4083 -3.7442 31 1 -2.5873 -0.9245 -4.8683 32 1 1.3829 -1.9680 -6.1650 33 1 0.3460 -0.6419 -6.9186 34 1 3.1968 -0.2669 -5.6664 35 1 2.1601 1.0595 -6.4198 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393685063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:27 Heat of formation + Delta-G solvation = 39.614309 kcal Electronic energy + Delta-G solvation = -15357.516695 eV Core-core repulsion = 12970.006913 eV Total energy + Delta-G solvation = -2387.509782 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.32433 -36.67081 -35.30991 -31.97329 -31.76558 -29.49900 -25.62040 -24.58176 -24.12198 -21.02985 -20.43188 -19.16151 -17.44559 -15.95720 -15.62304 -14.64757 -14.43576 -14.01662 -13.71571 -13.56203 -13.00420 -12.77022 -12.54902 -12.36332 -12.03995 -11.66267 -11.61695 -11.35898 -11.08500 -11.01161 -10.99813 -10.76003 -10.45497 -10.31490 -10.09890 -9.33262 -8.89492 -8.44688 -8.09596 -7.47097 -6.04093 -4.09652 2.83084 2.86312 3.23481 3.34377 3.38205 3.98534 4.37191 4.82158 4.98965 5.05426 5.24504 5.31256 5.47065 5.63108 5.77886 5.85670 5.94896 6.10109 6.16122 6.22174 6.32216 6.40050 6.51390 6.58209 6.77764 6.82769 6.94808 7.15831 7.39784 7.54758 7.63158 7.87190 7.99898 8.32643 8.51420 8.94007 9.54291 11.03189 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.009407 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.891613 B = 2975.660007 C = 3806.616360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.001 4.001 3 H 0.122 0.878 4 C 0.224 3.776 5 N -0.451 5.451 6 C 0.089 3.911 7 H 0.043 0.957 8 C -0.141 4.141 9 N -0.667 5.667 10 C 0.107 3.893 11 C 0.049 3.951 12 C -0.481 4.481 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.881 5.881 16 Si 0.881 3.119 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.284 1.284 20 C -0.162 4.162 21 C -0.207 4.207 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.355 0.645 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 1.093 5.198 6.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.023 4.023 3 H 0.140 0.860 4 C -0.094 4.094 5 N -0.127 5.127 6 C -0.023 4.023 7 H 0.061 0.939 8 C -0.199 4.199 9 N -0.302 5.302 10 C -0.022 4.022 11 C 0.049 3.951 12 C -0.519 4.519 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.518 5.518 16 Si 0.709 3.291 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.201 4.201 21 C -0.244 4.244 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.179 0.821 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.923 0.406 6.491 8.157 hybrid contribution -1.735 0.198 -0.094 1.749 sum 3.188 0.604 6.397 7.173 Atomic orbital electron populations 1.21909 0.91935 1.03458 1.03836 1.19142 0.97010 0.99821 0.86297 0.86039 1.29218 0.92667 0.93294 0.94174 1.81164 1.09690 1.09855 1.12022 1.21456 0.95855 0.95953 0.88997 0.93897 1.21847 0.94853 1.02421 1.00783 1.60572 1.35532 1.32298 1.01846 1.21410 0.96968 0.92934 0.90845 1.18799 0.94059 0.96545 0.85721 1.20465 0.89427 0.92675 1.49368 0.91936 1.25005 0.98354 0.94963 0.95238 1.70010 1.16181 1.16891 1.48705 0.86700 0.81951 0.82347 0.78104 1.19487 1.21218 1.20974 1.22535 0.99968 0.94015 1.03535 1.22977 0.93163 0.99948 1.08327 0.91730 0.89322 0.91858 0.92204 0.91655 0.93788 0.82067 0.95318 0.94124 0.93185 0.92325 0.90148 0.91893 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.91 37.16 0.33 -1.56 16 2 C 0.00 -0.01 2.51 -93.41 -0.23 -0.24 16 3 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 4 C 0.22 3.10 13.37 -20.76 -0.28 2.83 16 5 N -0.45 -7.17 18.54 42.15 0.78 -6.39 16 6 C 0.09 1.31 2.20 -67.72 -0.15 1.16 16 7 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 8 C -0.14 -1.93 9.16 37.16 0.34 -1.59 16 9 N -0.67 -11.91 6.07 -106.73 -0.65 -12.56 16 10 C 0.11 2.21 5.58 -3.83 -0.02 2.19 16 11 C 0.05 1.14 1.77 -155.62 -0.28 0.86 16 12 C -0.48 -11.98 7.45 -34.44 -0.26 -12.23 16 13 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 14 C 0.07 1.69 5.44 -17.82 -0.10 1.59 16 15 N -0.88 -23.29 12.86 55.43 0.71 -22.57 16 16 Si 0.88 19.50 29.54 -169.99 -5.02 14.48 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 C -0.16 -3.70 9.43 -26.74 -0.25 -3.95 16 21 C -0.21 -4.40 9.89 -26.70 -0.26 -4.67 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.21 6.21 -51.93 -0.32 0.89 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.85 7.39 -51.93 -0.38 0.46 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.57 7.23 -51.93 -0.38 0.19 16 28 H 0.36 6.64 5.14 -39.29 -0.20 6.44 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.79 7.14 -51.93 -0.37 0.42 16 31 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.06 1.22 8.09 -51.92 -0.42 0.80 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -26.67 294.36 -6.31 -32.97 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.41 Total: 5.26 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.16 Total: -15.62 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.85 Total: -41.53 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.67 -6.31 -32.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393685063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.586 kcal (2) G-P(sol) polarization free energy of solvation -26.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds