Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46989 * 2 1 4 4 H 1.09002 * 109.47285 * 304.65559 * 3 2 1 5 5 C 1.50707 * 109.47162 * 184.66071 * 3 2 1 6 6 H 1.07998 * 119.99871 * 245.43476 * 5 3 2 7 7 C 1.37871 * 119.99898 * 65.43191 * 5 3 2 8 8 N 1.31516 * 120.00031 * 9.54395 * 7 5 3 9 9 Si 1.86800 * 119.99945 * 189.54301 * 7 5 3 10 10 H 1.48503 * 109.46964 * 84.99550 * 9 7 5 11 11 H 1.48495 * 109.47309 * 204.99203 * 9 7 5 12 12 H 1.48493 * 109.46991 * 324.99495 * 9 7 5 13 13 N 1.46501 * 109.47413 * 64.65825 * 3 2 1 14 14 C 1.34950 * 126.03358 * 84.99688 * 13 3 2 15 15 C 1.35319 * 107.74305 * 180.02562 * 14 13 3 16 16 C 1.50701 * 126.03648 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47043 * 120.00212 * 16 15 14 18 18 C 1.52997 * 109.47090 * 240.00066 * 16 15 14 19 19 C 1.39862 * 107.92028 * 0.26594 * 15 14 13 20 20 N 1.30835 * 108.20464 * 359.55415 * 19 15 14 21 21 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47153 * 300.00124 * 1 2 3 23 23 H 1.09002 * 109.47577 * 60.00185 * 1 2 3 24 24 H 1.08998 * 109.47153 * 239.99875 * 2 1 3 25 25 H 1.08997 * 109.46768 * 120.00176 * 2 1 3 26 26 H 0.97006 * 120.00023 * 180.02562 * 8 7 5 27 27 H 1.08004 * 126.12982 * 0.02562 * 14 13 3 28 28 H 1.08999 * 109.47385 * 0.02562 * 16 15 14 29 29 H 1.08999 * 109.46830 * 59.99906 * 17 16 15 30 30 H 1.09005 * 109.46860 * 299.99934 * 17 16 15 31 31 H 1.08994 * 109.47112 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47327 * 300.00428 * 18 16 15 33 33 H 1.08996 * 109.47200 * 60.00203 * 18 16 15 34 34 H 1.09003 * 109.47180 * 180.02562 * 18 16 15 35 35 H 1.08007 * 125.89930 * 179.73810 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9798 -0.8453 5 6 3.5426 1.4441 -0.1155 6 1 4.1465 1.8103 0.7015 7 6 4.1462 0.9780 -1.2640 8 7 3.4190 0.7088 -2.3263 9 14 5.9969 0.7287 -1.3114 10 1 6.3302 -0.6105 -0.7629 11 1 6.4731 0.8212 -2.7149 12 1 6.6586 1.7771 -0.4940 13 7 1.6454 2.1000 1.2483 14 6 2.3152 2.0487 2.4187 15 6 1.6250 2.7835 3.3214 16 6 2.0064 3.0041 4.7625 17 6 2.1990 4.5008 5.0157 18 6 0.8965 2.4719 5.6711 19 6 0.4916 3.2965 2.6823 20 7 0.5059 2.8924 1.4380 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8437 0.3805 -3.1343 27 1 3.2370 1.5166 2.6021 28 1 2.9361 2.4771 4.9771 29 1 1.2696 5.0281 4.8010 30 1 2.9899 4.8799 4.3683 31 1 2.4745 4.6604 6.0581 32 1 -0.0330 2.9992 5.4564 33 1 0.7593 1.4058 5.4907 34 1 1.1722 2.6319 6.7135 35 1 -0.2635 3.9210 3.1367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402019188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = 46.613125 kcal Electronic energy + Delta-G solvation = -15391.303812 eV Core-core repulsion = 13004.097521 eV Total energy + Delta-G solvation = -2387.206291 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38043 -35.69229 -34.40395 -31.96224 -30.22191 -28.46524 -26.81773 -26.71322 -23.46431 -21.80087 -21.24989 -19.44180 -18.69269 -16.54519 -15.80310 -14.68176 -14.30106 -14.13663 -13.78655 -13.53175 -12.98286 -12.74655 -12.31614 -12.07090 -11.94091 -11.79282 -11.56911 -11.09579 -10.91159 -10.87397 -10.78827 -10.53355 -10.32615 -10.32413 -9.92557 -9.64455 -9.30774 -8.64538 -8.38173 -7.42899 -6.33199 -4.39884 2.94288 3.17189 3.24058 3.26075 3.57176 3.72308 4.24949 5.00515 5.18723 5.34202 5.59254 5.69591 5.84943 5.88082 6.03460 6.06937 6.10876 6.14241 6.15976 6.32286 6.38892 6.40811 6.58492 6.66160 6.77757 6.89191 6.93938 6.99034 7.27738 7.45055 7.52202 7.65828 7.87338 8.14287 8.66767 8.78494 9.26466 10.74978 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029126 B = 0.008430 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.097801 B = 3320.678427 C = 3924.840701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.282 3.718 4 H 0.066 0.934 5 C -0.543 4.543 6 H 0.068 0.932 7 C 0.073 3.927 8 N -0.880 5.880 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.323 5.323 14 C 0.076 3.924 15 C -0.268 4.268 16 C -0.010 4.010 17 C -0.139 4.139 18 C -0.138 4.138 19 C 0.027 3.973 20 N -0.311 5.311 21 H 0.036 0.964 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.268 0.732 27 H 0.161 0.839 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 1.500 10.339 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.183 3.817 4 H 0.083 0.917 5 C -0.582 4.582 6 H 0.086 0.914 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.102 5.102 14 C -0.074 4.074 15 C -0.280 4.280 16 C -0.030 4.030 17 C -0.196 4.196 18 C -0.196 4.196 19 C -0.157 4.157 20 N -0.134 5.134 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.179 0.821 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.686 1.395 8.826 9.330 hybrid contribution 1.409 -0.209 0.585 1.540 sum -1.278 1.187 9.411 9.571 Atomic orbital electron populations 1.21794 0.97918 0.99461 1.01252 1.21874 0.93288 0.98555 1.02198 1.19259 0.95289 0.88894 0.78286 0.91662 1.21214 0.89483 1.44850 1.02648 0.91375 1.24879 0.99070 0.94640 0.94600 1.69959 1.36223 1.43203 1.02232 0.86412 0.84122 0.78945 0.77497 1.20137 1.20935 1.19660 1.49466 1.15435 1.35040 1.10305 1.22177 0.98536 1.00214 0.86481 1.19797 1.00259 1.11116 0.96856 1.19244 0.97807 0.95569 0.90367 1.21802 1.01602 0.96135 1.00068 1.21800 0.98735 1.00978 0.98044 1.23327 0.98617 1.01783 0.91981 1.77224 1.06245 1.12021 1.17892 0.94525 0.93572 0.93273 0.89145 0.93927 0.92185 0.82130 0.91606 0.92978 0.92894 0.93516 0.92976 0.92998 0.93505 0.82033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.80 37.16 0.36 -2.66 16 2 C -0.12 -2.76 5.50 -26.73 -0.15 -2.91 16 3 C 0.28 7.02 2.57 -69.08 -0.18 6.84 16 4 H 0.07 1.83 8.09 -51.93 -0.42 1.41 16 5 C -0.54 -14.17 8.28 -34.44 -0.29 -14.45 16 6 H 0.07 1.75 6.61 -52.49 -0.35 1.40 16 7 C 0.07 1.90 5.16 -17.82 -0.09 1.81 16 8 N -0.88 -23.82 12.16 55.43 0.67 -23.14 16 9 Si 0.90 20.16 29.55 -169.99 -5.02 15.13 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.32 -7.41 3.04 -55.99 -0.17 -7.58 16 14 C 0.08 1.57 10.22 -17.22 -0.18 1.39 16 15 C -0.27 -4.80 4.80 -105.05 -0.50 -5.30 16 16 C -0.01 -0.14 3.28 -91.77 -0.30 -0.44 16 17 C -0.14 -1.76 9.09 37.16 0.34 -1.42 16 18 C -0.14 -1.70 9.08 37.16 0.34 -1.37 16 19 C 0.03 0.51 11.45 -17.37 -0.20 0.31 16 20 N -0.31 -6.90 11.99 30.62 0.37 -6.54 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.97 7.20 -51.93 -0.37 0.59 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.09 2.23 6.81 -51.93 -0.35 1.88 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.16 3.09 7.47 -52.48 -0.39 2.70 16 28 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.05 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.63 8.02 -51.93 -0.42 0.21 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.16 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -27.32 290.95 -6.27 -33.59 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.66 Total: 2.36 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.84 Total: -18.21 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.87 Total: -37.26 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.32 -6.27 -33.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402019188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.199 kcal (2) G-P(sol) polarization free energy of solvation -27.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds