Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46989 * 2 1 4 4 H 1.09002 * 109.47285 * 304.65559 * 3 2 1 5 5 C 1.50707 * 109.47162 * 184.66071 * 3 2 1 6 6 H 1.07998 * 119.99871 * 245.43476 * 5 3 2 7 7 C 1.37871 * 119.99898 * 65.43191 * 5 3 2 8 8 N 1.31516 * 120.00031 * 9.54395 * 7 5 3 9 9 Si 1.86800 * 119.99945 * 189.54301 * 7 5 3 10 10 H 1.48503 * 109.46964 * 84.99550 * 9 7 5 11 11 H 1.48495 * 109.47309 * 204.99203 * 9 7 5 12 12 H 1.48493 * 109.46991 * 324.99495 * 9 7 5 13 13 N 1.46501 * 109.47413 * 64.65825 * 3 2 1 14 14 C 1.34950 * 126.03358 * 84.99688 * 13 3 2 15 15 C 1.35319 * 107.74305 * 180.02562 * 14 13 3 16 16 C 1.50701 * 126.03648 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47043 * 120.00212 * 16 15 14 18 18 C 1.52997 * 109.47090 * 240.00066 * 16 15 14 19 19 C 1.39862 * 107.92028 * 0.26594 * 15 14 13 20 20 N 1.30835 * 108.20464 * 359.55415 * 19 15 14 21 21 H 1.09002 * 109.46987 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47153 * 300.00124 * 1 2 3 23 23 H 1.09002 * 109.47577 * 60.00185 * 1 2 3 24 24 H 1.08998 * 109.47153 * 239.99875 * 2 1 3 25 25 H 1.08997 * 109.46768 * 120.00176 * 2 1 3 26 26 H 0.97006 * 120.00023 * 180.02562 * 8 7 5 27 27 H 1.08004 * 126.12982 * 0.02562 * 14 13 3 28 28 H 1.08999 * 109.47385 * 0.02562 * 16 15 14 29 29 H 1.08999 * 109.46830 * 59.99906 * 17 16 15 30 30 H 1.09005 * 109.46860 * 299.99934 * 17 16 15 31 31 H 1.08994 * 109.47112 * 179.97438 * 17 16 15 32 32 H 1.08999 * 109.47327 * 300.00428 * 18 16 15 33 33 H 1.08996 * 109.47200 * 60.00203 * 18 16 15 34 34 H 1.09003 * 109.47180 * 180.02562 * 18 16 15 35 35 H 1.08007 * 125.89930 * 179.73810 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9798 -0.8453 5 6 3.5426 1.4441 -0.1155 6 1 4.1465 1.8103 0.7015 7 6 4.1462 0.9780 -1.2640 8 7 3.4190 0.7088 -2.3263 9 14 5.9969 0.7287 -1.3114 10 1 6.3302 -0.6105 -0.7629 11 1 6.4731 0.8212 -2.7149 12 1 6.6586 1.7771 -0.4940 13 7 1.6454 2.1000 1.2483 14 6 2.3152 2.0487 2.4187 15 6 1.6250 2.7835 3.3214 16 6 2.0064 3.0041 4.7625 17 6 2.1990 4.5008 5.0157 18 6 0.8965 2.4719 5.6711 19 6 0.4916 3.2965 2.6823 20 7 0.5059 2.8924 1.4380 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8437 0.3805 -3.1343 27 1 3.2370 1.5166 2.6021 28 1 2.9361 2.4771 4.9771 29 1 1.2696 5.0281 4.8010 30 1 2.9899 4.8799 4.3683 31 1 2.4745 4.6604 6.0581 32 1 -0.0330 2.9992 5.4564 33 1 0.7593 1.4058 5.4907 34 1 1.1722 2.6319 6.7135 35 1 -0.2635 3.9210 3.1367 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402019188.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = 32.561137 kcal Electronic energy + Delta-G solvation = -15391.913152 eV Core-core repulsion = 13004.097521 eV Total energy + Delta-G solvation = -2387.815631 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96403 -37.30555 -35.83782 -33.89018 -31.90225 -29.98819 -28.56176 -27.78605 -25.31882 -23.17747 -22.88315 -21.15707 -20.16522 -18.46416 -17.51524 -16.35954 -16.01255 -15.45976 -15.35623 -14.81464 -14.59836 -14.25582 -13.79078 -13.58295 -13.46750 -13.36569 -12.91970 -12.83022 -12.63540 -12.21827 -12.15672 -12.10600 -11.87905 -11.77773 -11.63598 -11.27052 -11.03374 -10.63775 -10.07083 -8.97987 -8.32068 -6.46475 1.32190 1.40718 1.41989 1.51260 2.02534 2.11215 2.38647 2.99727 3.92513 4.20289 4.29476 4.30372 4.37692 4.43782 4.54979 4.59340 4.81347 4.92163 4.96552 4.98129 5.01483 5.11537 5.16054 5.22466 5.32063 5.39372 5.43648 5.54400 5.57439 5.59210 5.70442 5.89258 6.13973 6.35588 6.71494 7.16959 7.24299 8.76208 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.029126 B = 0.008430 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.097801 B = 3320.678427 C = 3924.840701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C 0.290 3.710 4 H 0.021 0.979 5 C -0.559 4.559 6 H 0.067 0.933 7 C 0.029 3.971 8 N -0.910 5.910 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.346 5.346 14 C 0.053 3.947 15 C -0.250 4.250 16 C -0.012 4.012 17 C -0.135 4.135 18 C -0.134 4.134 19 C 0.034 3.966 20 N -0.348 5.348 21 H 0.063 0.937 22 H 0.041 0.959 23 H 0.038 0.962 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.271 0.729 27 H 0.166 0.834 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.771 1.692 12.511 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.190 3.810 4 H 0.039 0.961 5 C -0.597 4.597 6 H 0.085 0.915 7 C -0.173 4.173 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.193 1.193 13 N -0.126 5.126 14 C -0.096 4.096 15 C -0.262 4.262 16 C -0.031 4.031 17 C -0.193 4.193 18 C -0.191 4.191 19 C -0.150 4.150 20 N -0.171 5.171 21 H 0.082 0.918 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.183 0.817 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.352 1.590 11.024 11.384 hybrid contribution 1.250 -0.192 -0.016 1.265 sum -1.102 1.398 11.008 11.151 Atomic orbital electron populations 1.21656 0.96078 1.00920 1.00489 1.21705 0.94863 0.97258 1.01196 1.18882 0.94604 0.89340 0.78172 0.96120 1.21466 0.90308 1.45079 1.02858 0.91482 1.25688 1.03420 0.94143 0.94093 1.70070 1.38038 1.43798 1.02749 0.85407 0.78714 0.79161 0.77475 1.19087 1.20686 1.19340 1.49239 1.16540 1.36512 1.10307 1.22529 0.99223 1.01452 0.86385 1.20244 0.98893 1.08720 0.98350 1.19389 0.98766 0.96968 0.88009 1.21768 1.01405 0.94673 1.01405 1.21754 0.98124 1.00250 0.98964 1.23947 0.99248 1.00897 0.90949 1.77185 1.06734 1.13176 1.19988 0.91848 0.93996 0.94261 0.91206 0.93552 0.92012 0.81668 0.91168 0.92524 0.94335 0.90964 0.92518 0.93946 0.91050 0.78616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 9.80 71.98 0.71 -4.86 16 2 C -0.11 -5.24 5.50 30.59 0.17 -5.07 16 3 C 0.29 15.00 2.57 44.25 0.11 15.11 16 4 H 0.02 1.24 8.09 -2.39 -0.02 1.22 16 5 C -0.56 -29.81 8.28 25.60 0.21 -29.60 16 6 H 0.07 3.50 6.61 -2.91 -0.02 3.48 16 7 C 0.03 1.51 5.16 84.65 0.44 1.94 16 8 N -0.91 -50.44 12.16 21.45 0.26 -50.18 16 9 Si 0.97 41.43 29.55 68.60 2.03 43.46 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.35 -16.16 3.04 -331.05 -1.01 -17.16 16 14 C 0.05 2.15 10.22 83.54 0.85 3.01 16 15 C -0.25 -8.57 4.80 -20.14 -0.10 -8.66 16 16 C -0.01 -0.30 3.28 -11.54 -0.04 -0.33 16 17 C -0.14 -2.99 9.09 71.98 0.65 -2.34 16 18 C -0.13 -2.83 9.08 71.98 0.65 -2.18 16 19 C 0.03 1.21 11.45 85.23 0.98 2.18 16 20 N -0.35 -15.51 11.99 -57.02 -0.68 -16.19 16 21 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 22 H 0.04 1.75 7.20 -2.39 -0.02 1.74 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 3.55 6.81 -2.39 -0.02 3.54 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 27 H 0.17 6.37 7.47 -2.91 -0.02 6.35 16 28 H 0.07 1.74 8.11 -2.39 -0.02 1.72 16 29 H 0.06 1.20 8.03 -2.39 -0.02 1.18 16 30 H 0.04 0.95 8.14 -2.38 -0.02 0.94 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.15 8.02 -2.39 -0.02 1.13 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.20 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -59.65 290.95 6.28 -53.38 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.04 Total: 17.49 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 4.64 Total: -30.79 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -1.43 Total: -83.54 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -59.65 6.28 -53.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402019188.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.938 kcal (2) G-P(sol) polarization free energy of solvation -59.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds