Wall clock time and date at job start Mon Mar 30 2020 03:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00220 * 2 1 4 4 C 1.50706 * 109.46917 * 293.95062 * 3 2 1 5 5 H 1.08001 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99804 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00411 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46899 * 89.99745 * 8 6 4 10 10 H 1.48495 * 109.47277 * 210.00175 * 8 6 4 11 11 H 1.48507 * 109.46780 * 330.00143 * 8 6 4 12 12 C 1.46902 * 110.99921 * 123.94632 * 2 1 3 13 13 C 1.53003 * 109.46648 * 77.44673 * 12 2 1 14 14 C 1.47195 * 110.43896 * 293.77479 * 13 12 2 15 15 N 3.70779 * 55.75439 * 166.69770 * 2 1 3 16 16 C 1.54893 * 110.59847 * 56.39819 * 13 12 2 17 17 C 1.54894 * 102.74826 * 156.67543 * 16 13 12 18 18 C 1.54269 * 104.19296 * 322.05611 * 17 16 13 19 19 C 1.53864 * 106.60248 * 23.60911 * 18 17 16 20 20 H 1.08994 * 109.47281 * 286.98116 * 1 2 3 21 21 H 1.09004 * 109.46869 * 46.97994 * 1 2 3 22 22 H 1.08994 * 109.47095 * 166.97600 * 1 2 3 23 23 H 1.08996 * 109.47435 * 53.94878 * 3 2 1 24 24 H 1.09000 * 109.47480 * 173.95161 * 3 2 1 25 25 H 0.96998 * 119.99633 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47250 * 317.44884 * 12 2 1 27 27 H 1.08998 * 109.47497 * 197.44549 * 12 2 1 28 28 H 1.09004 * 110.75120 * 274.98456 * 16 13 12 29 29 H 1.08993 * 110.75570 * 38.35582 * 16 13 12 30 30 H 1.09000 * 110.48244 * 203.37959 * 17 16 13 31 31 H 1.08999 * 110.48525 * 80.73515 * 17 16 13 32 32 H 1.09002 * 110.02694 * 264.32704 * 18 17 16 33 33 H 1.08994 * 110.03333 * 142.90033 * 18 17 16 34 34 H 1.09003 * 110.03881 * 240.71919 * 19 18 17 35 35 H 1.09000 * 110.03232 * 119.28186 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5111 -2.0489 6 6 2.0269 3.3494 -1.5287 7 7 2.7120 4.0019 -0.6151 8 14 1.5832 4.1867 -3.1385 9 1 0.2705 4.8665 -2.9974 10 1 2.6253 5.1881 -3.4792 11 1 1.5010 3.1707 -4.2185 12 6 1.9954 -0.7658 1.1377 13 6 1.8854 -2.2625 0.8395 14 6 0.4727 -2.6691 0.7637 15 7 -0.6176 -2.9827 0.7052 16 6 2.6213 -2.6112 -0.4781 17 6 2.9331 -4.1187 -0.3068 18 6 3.2925 -4.2634 1.1865 19 6 2.6265 -3.0833 1.9153 20 1 -0.3633 0.3001 0.9828 21 1 -0.3633 0.7012 -0.7514 22 1 -0.3633 -1.0012 -0.2316 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1083 25 1 2.9866 4.9179 -0.7772 26 1 1.4188 -0.5303 2.0322 27 1 3.0409 -0.5035 1.2997 28 1 1.9724 -2.4462 -1.3382 29 1 3.5415 -2.0344 -0.5708 30 1 3.7781 -4.4069 -0.9322 31 1 2.0562 -4.7194 -0.5481 32 1 4.3739 -4.2198 1.3161 33 1 2.9074 -5.2067 1.5735 34 1 3.3846 -2.4669 2.3986 35 1 1.9179 -3.4538 2.6560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405134077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:38 Heat of formation + Delta-G solvation = 20.010104 kcal Electronic energy + Delta-G solvation = -15359.735803 eV Core-core repulsion = 12971.375919 eV Total energy + Delta-G solvation = -2388.359884 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38918 -36.03394 -35.51814 -32.58918 -30.31159 -28.71269 -27.13823 -25.82101 -23.31260 -21.74786 -20.66176 -20.14205 -16.87442 -16.26760 -15.30875 -15.02755 -14.65118 -14.46300 -13.95722 -13.64056 -13.16232 -12.78403 -12.59431 -12.44065 -11.94967 -11.63988 -11.30162 -11.24212 -11.04470 -10.93997 -10.89805 -10.78096 -10.63465 -10.48879 -10.43069 -10.23823 -9.79246 -9.19755 -8.45807 -7.32130 -6.04486 -4.05448 3.03070 3.06746 3.31421 3.37769 3.42178 4.11812 4.39124 4.55865 4.67241 4.91245 5.07799 5.27802 5.32358 5.50238 5.57459 5.65803 5.70993 5.83628 5.92307 5.99785 6.05675 6.10176 6.17901 6.24182 6.33024 6.43083 6.49888 6.76547 7.22745 7.31336 7.77051 7.85230 8.02586 8.14574 8.50528 9.02114 9.58870 11.06385 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.006712 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.454268 B = 4170.941634 C = 4312.077487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.536 5.536 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.067 3.933 13 C 0.031 3.969 14 C 0.241 3.759 15 N -0.456 5.456 16 C -0.088 4.088 17 C -0.133 4.133 18 C -0.123 4.123 19 C -0.110 4.110 20 H 0.009 0.991 21 H 0.078 0.922 22 H 0.050 0.950 23 H -0.009 1.009 24 H 0.033 0.967 25 H 0.261 0.739 26 H 0.032 0.968 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -13.030 3.833 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.063 4.063 13 C 0.027 3.973 14 C -0.076 4.076 15 N -0.131 5.131 16 C -0.127 4.127 17 C -0.171 4.171 18 C -0.161 4.161 19 C -0.150 4.150 20 H 0.028 0.972 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.009 0.991 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.556 -13.550 3.347 14.044 hybrid contribution -0.181 1.178 -0.012 1.192 sum 1.375 -12.373 3.335 12.888 Atomic orbital electron populations 1.22515 0.88972 1.01056 0.99906 1.62107 1.06816 1.18005 1.39055 1.19770 0.95387 0.81361 0.96700 1.21156 1.34793 0.96907 1.01709 0.91850 1.24974 0.95284 0.97335 0.96965 1.69955 1.38368 1.11440 1.34088 0.86516 0.77990 0.79251 0.83783 1.20799 1.21237 1.19756 1.22160 1.01514 0.89508 0.93112 1.19235 0.82784 0.96622 0.98690 1.28864 0.94589 0.91731 0.92429 1.81149 1.12294 1.10567 1.09131 1.22390 1.00770 0.94321 0.95204 1.22495 1.01202 0.97290 0.96066 1.22139 1.00692 0.97770 0.95481 1.22238 0.99369 0.96631 0.96729 0.97217 0.90350 0.93182 0.99116 0.94898 0.92924 0.94944 0.89275 0.90276 0.89076 0.91144 0.92166 0.91218 0.92054 0.89655 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 8.82 60.06 0.53 1.03 16 2 N -0.54 -11.03 4.21 -244.37 -1.03 -12.05 16 3 C 0.19 4.82 4.70 -4.97 -0.02 4.79 16 4 C -0.51 -13.94 8.33 -34.44 -0.29 -14.23 16 5 H 0.06 1.74 7.22 -52.49 -0.38 1.36 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 12 C 0.07 1.10 4.13 -3.82 -0.02 1.08 16 13 C 0.03 0.42 0.63 -155.63 -0.10 0.32 16 14 C 0.24 3.85 10.73 -20.76 -0.22 3.63 16 15 N -0.46 -8.16 17.68 42.15 0.75 -7.42 16 16 C -0.09 -1.15 5.36 -24.73 -0.13 -1.28 16 17 C -0.13 -1.39 6.59 -25.07 -0.17 -1.56 16 18 C -0.12 -1.14 6.80 -25.62 -0.17 -1.31 16 19 C -0.11 -1.15 5.91 -25.61 -0.15 -1.30 16 20 H 0.01 0.19 7.87 -51.93 -0.41 -0.22 16 21 H 0.08 1.74 6.61 -51.93 -0.34 1.39 16 22 H 0.05 0.97 4.84 -51.93 -0.25 0.72 16 23 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 24 H 0.03 0.85 7.82 -51.93 -0.41 0.45 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.03 0.53 7.79 -51.93 -0.40 0.13 16 27 H 0.09 1.36 7.55 -51.93 -0.39 0.96 16 28 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 29 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.78 7.74 -51.93 -0.40 0.38 16 35 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16 LS Contribution 283.84 15.07 4.28 4.28 Total: -1.00 -29.85 283.84 -6.60 -36.45 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -5.48 Total: -4.83 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.84 Total: -7.37 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.45 Total: -44.96 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.85 -6.60 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405134077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.460 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds