Wall clock time and date at job start Mon Mar 30 2020 03:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00220 * 2 1 4 4 C 1.50706 * 109.46917 * 293.95062 * 3 2 1 5 5 H 1.08001 * 119.99825 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99804 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00411 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46899 * 89.99745 * 8 6 4 10 10 H 1.48495 * 109.47277 * 210.00175 * 8 6 4 11 11 H 1.48507 * 109.46780 * 330.00143 * 8 6 4 12 12 C 1.46902 * 110.99921 * 123.94632 * 2 1 3 13 13 C 1.53003 * 109.46648 * 77.44673 * 12 2 1 14 14 C 1.47195 * 110.43896 * 293.77479 * 13 12 2 15 15 N 3.70779 * 55.75439 * 166.69770 * 2 1 3 16 16 C 1.54893 * 110.59847 * 56.39819 * 13 12 2 17 17 C 1.54894 * 102.74826 * 156.67543 * 16 13 12 18 18 C 1.54269 * 104.19296 * 322.05611 * 17 16 13 19 19 C 1.53864 * 106.60248 * 23.60911 * 18 17 16 20 20 H 1.08994 * 109.47281 * 286.98116 * 1 2 3 21 21 H 1.09004 * 109.46869 * 46.97994 * 1 2 3 22 22 H 1.08994 * 109.47095 * 166.97600 * 1 2 3 23 23 H 1.08996 * 109.47435 * 53.94878 * 3 2 1 24 24 H 1.09000 * 109.47480 * 173.95161 * 3 2 1 25 25 H 0.96998 * 119.99633 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47250 * 317.44884 * 12 2 1 27 27 H 1.08998 * 109.47497 * 197.44549 * 12 2 1 28 28 H 1.09004 * 110.75120 * 274.98456 * 16 13 12 29 29 H 1.08993 * 110.75570 * 38.35582 * 16 13 12 30 30 H 1.09000 * 110.48244 * 203.37959 * 17 16 13 31 31 H 1.08999 * 110.48525 * 80.73515 * 17 16 13 32 32 H 1.09002 * 110.02694 * 264.32704 * 18 17 16 33 33 H 1.08994 * 110.03333 * 142.90033 * 18 17 16 34 34 H 1.09003 * 110.03881 * 240.71919 * 19 18 17 35 35 H 1.09000 * 110.03232 * 119.28186 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5111 -2.0489 6 6 2.0269 3.3494 -1.5287 7 7 2.7120 4.0019 -0.6151 8 14 1.5832 4.1867 -3.1385 9 1 0.2705 4.8665 -2.9974 10 1 2.6253 5.1881 -3.4792 11 1 1.5010 3.1707 -4.2185 12 6 1.9954 -0.7658 1.1377 13 6 1.8854 -2.2625 0.8395 14 6 0.4727 -2.6691 0.7637 15 7 -0.6176 -2.9827 0.7052 16 6 2.6213 -2.6112 -0.4781 17 6 2.9331 -4.1187 -0.3068 18 6 3.2925 -4.2634 1.1865 19 6 2.6265 -3.0833 1.9153 20 1 -0.3633 0.3001 0.9828 21 1 -0.3633 0.7012 -0.7514 22 1 -0.3633 -1.0012 -0.2316 23 1 1.5611 1.9274 0.8308 24 1 3.0797 1.3444 0.1083 25 1 2.9866 4.9179 -0.7772 26 1 1.4188 -0.5303 2.0322 27 1 3.0409 -0.5035 1.2997 28 1 1.9724 -2.4462 -1.3382 29 1 3.5415 -2.0344 -0.5708 30 1 3.7781 -4.4069 -0.9322 31 1 2.0562 -4.7194 -0.5481 32 1 4.3739 -4.2198 1.3161 33 1 2.9074 -5.2067 1.5735 34 1 3.3846 -2.4669 2.3986 35 1 1.9179 -3.4538 2.6560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405134077.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:37 Heat of formation + Delta-G solvation = 1.843467 kcal Electronic energy + Delta-G solvation = -15360.523567 eV Core-core repulsion = 12971.375919 eV Total energy + Delta-G solvation = -2389.147649 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55884 -37.57668 -36.82426 -34.63560 -31.57463 -29.63089 -29.05950 -27.39572 -24.98215 -22.93332 -22.21086 -21.15193 -18.59226 -17.77956 -16.81870 -16.29600 -16.22584 -15.73046 -15.62099 -14.84965 -14.57459 -14.24636 -14.07960 -13.80283 -13.57683 -13.33263 -12.86379 -12.74166 -12.48273 -12.32463 -12.09149 -12.04263 -11.99526 -11.86077 -11.72103 -11.54709 -11.19315 -11.11659 -10.59488 -9.06108 -8.18482 -6.26920 1.42437 1.42879 1.54475 1.75506 1.77686 2.41782 2.92877 3.14121 3.21002 3.72859 3.82474 3.93921 4.29168 4.37082 4.47748 4.57806 4.65769 4.67632 4.76302 4.81975 4.90966 5.00465 5.06333 5.18649 5.21099 5.26377 5.31312 5.40875 5.46606 5.57930 5.66949 6.06664 6.24979 6.56750 6.61960 6.88223 7.42179 8.92269 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.006712 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.454268 B = 4170.941634 C = 4312.077487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.537 5.537 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.006 3.994 7 N -0.931 5.931 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.065 3.935 13 C 0.033 3.967 14 C 0.252 3.748 15 N -0.491 5.491 16 C -0.090 4.090 17 C -0.127 4.127 18 C -0.118 4.118 19 C -0.106 4.106 20 H 0.008 0.992 21 H 0.057 0.943 22 H 0.061 0.939 23 H -0.038 1.038 24 H 0.022 0.978 25 H 0.264 0.736 26 H 0.034 0.966 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -14.114 3.748 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.261 5.261 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.788 3.212 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.191 1.191 12 C -0.065 4.065 13 C 0.028 3.972 14 C -0.064 4.064 15 N -0.168 5.168 16 C -0.129 4.129 17 C -0.165 4.165 18 C -0.155 4.155 19 C -0.145 4.145 20 H 0.027 0.973 21 H 0.076 0.924 22 H 0.079 0.921 23 H -0.020 1.020 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.452 -14.660 3.268 15.218 hybrid contribution -0.466 1.496 0.043 1.568 sum 1.986 -13.163 3.311 13.718 Atomic orbital electron populations 1.22403 0.89046 1.01022 0.99124 1.62030 1.06707 1.15771 1.41587 1.19440 0.94433 0.83265 0.94698 1.21461 1.34695 0.97474 1.02516 0.92338 1.25798 0.95113 0.98014 1.00331 1.70060 1.39304 1.11860 1.35955 0.85486 0.77825 0.78222 0.79711 1.20344 1.20533 1.19100 1.22302 1.02038 0.90579 0.91546 1.19385 0.81967 0.95099 1.00700 1.29345 0.94916 0.90849 0.91281 1.81156 1.13396 1.11716 1.10501 1.22392 1.00130 0.96577 0.93751 1.22462 1.01576 0.94844 0.97599 1.22147 1.01902 0.97524 0.93970 1.22293 0.99560 0.96853 0.95764 0.97327 0.92424 0.92084 1.01997 0.96031 0.92692 0.94806 0.87872 0.92685 0.88835 0.89435 0.92983 0.89168 0.91025 0.87780 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.37 8.82 127.69 1.13 2.50 16 2 N -0.54 -22.19 4.21 -927.05 -3.90 -26.10 16 3 C 0.21 10.56 4.70 85.56 0.40 10.96 16 4 C -0.52 -29.10 8.33 25.60 0.21 -28.89 16 5 H 0.06 3.25 7.22 -2.91 -0.02 3.23 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 8 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.06 2.05 4.13 86.30 0.36 2.41 16 13 C 0.03 0.84 0.63 -52.91 -0.03 0.81 16 14 C 0.25 7.84 10.73 89.44 0.96 8.80 16 15 N -0.49 -17.37 17.68 20.00 0.35 -17.02 16 16 C -0.09 -2.21 5.36 31.89 0.17 -2.04 16 17 C -0.13 -2.34 6.59 31.67 0.21 -2.14 16 18 C -0.12 -1.75 6.80 31.32 0.21 -1.54 16 19 C -0.11 -1.89 5.91 31.32 0.19 -1.70 16 20 H 0.01 0.34 7.87 -2.39 -0.02 0.32 16 21 H 0.06 2.61 6.61 -2.38 -0.02 2.59 16 22 H 0.06 2.39 4.84 -2.39 -0.01 2.38 16 23 H -0.04 -2.11 8.12 -2.39 -0.02 -2.13 16 24 H 0.02 1.14 7.82 -2.39 -0.02 1.12 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.03 1.07 7.79 -2.39 -0.02 1.05 16 27 H 0.10 2.99 7.55 -2.39 -0.02 2.97 16 28 H 0.05 1.61 8.03 -2.38 -0.02 1.59 16 29 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.51 7.74 -2.39 -0.02 1.49 16 35 H 0.07 1.24 7.83 -2.39 -0.02 1.22 16 Total: -1.00 -63.99 283.84 4.08 -59.91 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.06 Total: 1.72 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.26 Total: -10.05 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -3.26 Total: -97.57 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.99 4.08 -59.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405134077.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.751 kcal (2) G-P(sol) polarization free energy of solvation -63.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds