Wall clock time and date at job start Mon Mar 30 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.36931 * 120.00229 * 85.90884 * 3 2 1 5 5 H 1.08004 * 119.99968 * 35.03848 * 4 3 2 6 6 C 1.38808 * 120.00210 * 214.76036 * 4 3 2 7 7 N 1.31622 * 119.99861 * 21.85478 * 6 4 3 8 8 Si 1.86796 * 120.00078 * 201.85470 * 6 4 3 9 9 H 1.48503 * 109.47231 * 90.00237 * 8 6 4 10 10 H 1.48507 * 109.47012 * 209.99902 * 8 6 4 11 11 H 1.48499 * 109.47331 * 329.99991 * 8 6 4 12 12 C 1.46501 * 119.99372 * 265.91114 * 3 2 1 13 13 C 1.53000 * 109.47143 * 269.99645 * 12 3 2 14 14 C 1.47196 * 110.01427 * 59.30321 * 13 12 3 15 15 N 3.36619 * 144.39381 * 246.87574 * 2 1 3 16 16 C 1.54270 * 110.03220 * 297.91357 * 13 12 3 17 17 C 1.54966 * 104.15657 * 217.13664 * 16 13 12 18 18 C 1.54887 * 102.77890 * 37.88607 * 17 16 13 19 19 C 1.53876 * 110.03041 * 180.69450 * 13 12 3 20 20 H 1.09002 * 109.46736 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47015 * 300.00408 * 1 2 3 22 22 H 1.08991 * 109.47029 * 60.00073 * 1 2 3 23 23 H 1.09000 * 109.47015 * 239.99592 * 2 1 3 24 24 H 1.09005 * 109.46989 * 120.00026 * 2 1 3 25 25 H 0.97001 * 120.00102 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47598 * 30.00243 * 12 3 2 27 27 H 1.09007 * 109.46584 * 149.99946 * 12 3 2 28 28 H 1.08996 * 110.48433 * 335.77937 * 16 13 12 29 29 H 1.08997 * 110.48615 * 98.43030 * 16 13 12 30 30 H 1.09008 * 110.71537 * 279.57248 * 17 16 13 31 31 H 1.09002 * 110.76337 * 156.22567 * 17 16 13 32 32 H 1.09004 * 110.48386 * 203.40275 * 18 17 16 33 33 H 1.09001 * 110.48598 * 80.76515 * 18 17 16 34 34 H 1.09004 * 110.03011 * 238.56935 * 19 13 12 35 35 H 1.08996 * 110.03535 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1669 2.0549 1.1828 5 1 2.4836 1.5259 2.0695 6 6 1.9160 3.4189 1.2409 7 7 1.1483 3.9860 0.3345 8 14 2.6677 4.4496 2.6054 9 1 3.9900 4.9635 2.1663 10 1 1.7705 5.5919 2.9145 11 1 2.8403 3.6130 3.8200 12 6 2.3478 2.0415 -1.2656 13 6 3.8191 1.7918 -1.6033 14 6 4.0718 0.3461 -1.7156 15 7 4.2669 -0.7697 -1.8024 16 6 4.7227 2.4031 -0.5125 17 6 5.9419 2.9534 -1.2950 18 6 5.2962 3.5098 -2.5882 19 6 4.1837 2.4948 -2.9226 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 0.9732 4.9392 0.3749 26 1 1.7194 1.6390 -2.0599 27 1 2.1733 3.1135 -1.1722 28 1 4.2044 3.2113 0.0034 29 1 5.0374 1.6368 0.1958 30 1 6.6443 2.1529 -1.5273 31 1 6.4331 3.7493 -0.7351 32 1 6.0297 3.5510 -3.3935 33 1 4.8705 4.4969 -2.4079 34 1 4.5487 1.7655 -3.6458 35 1 3.3127 3.0142 -3.3221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405177942.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:02 Heat of formation + Delta-G solvation = 16.210483 kcal Electronic energy + Delta-G solvation = -16075.053005 eV Core-core repulsion = 13686.528356 eV Total energy + Delta-G solvation = -2388.524648 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27945 -37.13328 -36.67905 -33.72775 -31.95811 -30.01024 -29.36127 -26.70134 -24.85570 -22.57020 -21.94465 -21.36880 -18.95673 -17.47160 -16.74264 -16.11649 -15.84086 -15.51771 -15.39755 -14.63738 -14.33036 -14.19019 -13.97537 -13.62105 -13.52237 -13.00593 -12.82822 -12.57399 -12.37139 -12.14831 -12.04097 -11.92274 -11.88943 -11.75393 -11.61954 -11.41954 -11.33652 -11.25904 -10.44878 -8.54502 -7.76331 -5.33118 1.51590 1.56769 1.61837 1.90964 1.94117 2.57514 3.14410 3.30768 3.58912 3.88939 3.96961 4.19581 4.35674 4.51989 4.62811 4.68361 4.72259 4.81541 4.90070 4.93313 4.98084 5.04831 5.14075 5.20465 5.23545 5.31075 5.44803 5.52697 5.54731 5.65487 5.72134 5.82986 6.53390 6.73804 7.22737 7.88056 8.43577 9.22085 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.014718 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.643947 B = 1901.921786 C = 2740.395076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 N -0.595 5.595 4 C -0.254 4.254 5 H 0.047 0.953 6 C -0.016 4.016 7 N -0.909 5.909 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.297 1.297 11 H -0.282 1.282 12 C 0.162 3.838 13 C 0.007 3.993 14 C 0.258 3.742 15 N -0.504 5.504 16 C -0.088 4.088 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.106 4.106 20 H 0.058 0.942 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.254 0.746 26 H 0.028 0.972 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 1.434 -5.400 8.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.012 3.988 3 N -0.315 5.315 4 C -0.385 4.385 5 H 0.064 0.936 6 C -0.214 4.214 7 N -0.553 5.553 8 Si 0.765 3.235 9 H -0.197 1.197 10 H -0.224 1.224 11 H -0.207 1.207 12 C 0.034 3.966 13 C 0.001 3.999 14 C -0.057 4.057 15 N -0.180 5.180 16 C -0.127 4.127 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.145 4.145 20 H 0.077 0.923 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.313 -0.130 -5.533 8.396 hybrid contribution -0.175 0.715 1.053 1.285 sum 6.138 0.585 -4.480 7.622 Atomic orbital electron populations 1.22098 0.98374 0.99810 1.00549 1.20946 0.92980 0.86943 0.97931 1.44033 1.74214 1.10166 1.03104 1.19017 1.38840 0.91344 0.89254 0.93579 1.25434 0.97771 0.98938 0.99236 1.70017 1.36377 1.11011 1.37925 0.85775 0.78784 0.78641 0.80302 1.19717 1.22391 1.20700 1.21141 0.87841 1.01810 0.85800 1.19984 1.00979 0.80561 0.98385 1.29592 0.90519 0.95214 0.90423 1.81048 1.11809 1.13532 1.11635 1.22230 0.94983 0.99804 0.95719 1.22627 0.96601 1.00412 0.96756 1.22323 0.96992 0.98349 0.97398 1.22208 1.00370 0.98213 0.93691 0.92315 0.94569 0.94342 0.94455 0.95171 0.93593 0.95337 0.87863 0.90682 0.93701 0.91585 0.90443 0.89280 0.90915 0.91005 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.03 10.22 71.98 0.74 -5.29 16 2 C 0.14 6.00 5.86 86.38 0.51 6.51 16 3 N -0.59 -27.84 2.16 -701.99 -1.52 -29.36 16 4 C -0.25 -12.92 8.08 84.03 0.68 -12.25 16 5 H 0.05 2.45 7.92 -2.91 -0.02 2.43 16 6 C -0.02 -0.80 4.01 84.86 0.34 -0.46 16 7 N -0.91 -47.67 11.30 21.65 0.24 -47.42 16 8 Si 0.94 41.07 29.48 68.60 2.02 43.09 16 9 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 10 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 C 0.16 6.84 4.01 86.38 0.35 7.18 16 13 C 0.01 0.25 0.67 -53.26 -0.04 0.22 16 14 C 0.26 9.91 11.41 89.44 1.02 10.93 16 15 N -0.50 -20.64 18.21 20.00 0.36 -20.27 16 16 C -0.09 -3.16 4.89 31.70 0.16 -3.00 16 17 C -0.13 -3.40 6.91 31.91 0.22 -3.18 16 18 C -0.11 -2.68 6.83 31.67 0.22 -2.46 16 19 C -0.11 -2.90 6.09 31.32 0.19 -2.71 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.58 6.38 -2.39 -0.02 1.57 16 24 H 0.03 1.34 8.07 -2.38 -0.02 1.32 16 25 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 26 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 27 H 0.10 4.82 5.31 -2.38 -0.01 4.81 16 28 H 0.07 3.06 6.11 -2.39 -0.01 3.04 16 29 H 0.04 1.72 7.82 -2.39 -0.02 1.71 16 30 H 0.07 1.67 8.14 -2.38 -0.02 1.66 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.81 7.66 -2.38 -0.02 1.79 16 35 H 0.09 2.26 7.67 -2.39 -0.02 2.24 16 Total: -1.00 -55.72 281.78 6.54 -49.18 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.05 Total: 9.29 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.37 Total: -4.51 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -0.91 Total: -97.05 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.02 Total: 43.09 kcal Total: -55.72 6.54 -49.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405177942.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.392 kcal (2) G-P(sol) polarization free energy of solvation -55.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds