Wall clock time and date at job start Mon Mar 30 2020 02:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46995 * 2 1 4 4 C 1.47205 * 109.46877 * 240.00065 * 2 1 3 5 5 N 2.60799 * 109.46758 * 240.00114 * 2 1 3 6 6 C 1.52995 * 109.47238 * 120.00186 * 2 1 3 7 7 N 1.46896 * 109.47196 * 185.66228 * 6 2 1 8 8 C 1.47444 * 111.00328 * 282.73974 * 7 6 2 9 9 C 1.54318 * 107.23582 * 236.74243 * 8 7 6 10 10 C 1.55140 * 103.01699 * 337.71453 * 9 8 7 11 11 H 1.08996 * 111.02621 * 277.54756 * 10 9 8 12 12 C 1.50695 * 110.99143 * 153.74600 * 10 9 8 13 13 H 1.08007 * 120.00114 * 247.73432 * 12 10 9 14 14 C 1.37874 * 120.00242 * 67.73034 * 12 10 9 15 15 N 1.31516 * 119.99721 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00278 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47359 * 90.00248 * 16 14 12 18 18 H 1.48505 * 109.47308 * 210.00172 * 16 14 12 19 19 H 1.48497 * 109.47388 * 329.99771 * 16 14 12 20 20 C 1.47848 * 111.00270 * 161.89716 * 7 6 2 21 21 H 1.08998 * 109.46788 * 299.99810 * 1 2 3 22 22 H 1.08998 * 109.47369 * 59.99909 * 1 2 3 23 23 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47226 * 185.01564 * 3 2 1 25 25 H 1.09005 * 109.47174 * 305.01335 * 3 2 1 26 26 H 1.08995 * 109.47217 * 65.01235 * 3 2 1 27 27 H 1.09008 * 109.47216 * 65.66357 * 6 2 1 28 28 H 1.09001 * 109.47428 * 305.66588 * 6 2 1 29 29 H 1.09001 * 109.88261 * 356.14829 * 8 7 6 30 30 H 1.08999 * 109.88790 * 117.33080 * 8 7 6 31 31 H 1.08998 * 110.70519 * 96.09346 * 9 8 7 32 32 H 1.08995 * 110.70326 * 219.32979 * 9 8 7 33 33 H 0.97001 * 120.00202 * 179.97438 * 15 14 12 34 34 H 1.09000 * 110.37008 * 265.19893 * 20 7 6 35 35 H 1.09000 * 110.36872 * 27.53103 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3992 -1.2294 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 3.5026 -0.6040 1.3194 8 6 4.1532 -1.5365 0.3807 9 6 5.1073 -2.4251 1.2063 10 6 5.3684 -1.5722 2.4756 11 1 6.1469 -0.8308 2.2953 12 6 5.7220 -2.4471 3.6505 13 1 5.0429 -2.5292 4.4864 14 6 6.9124 -3.1427 3.6585 15 7 7.7390 -3.0431 2.6405 16 14 7.3504 -4.2278 5.1146 17 1 6.8361 -5.6011 4.8810 18 1 8.8263 -4.2721 5.2727 19 1 6.7371 -3.6727 6.3479 20 6 3.9924 -0.8922 2.6844 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1263 1.4438 -0.0898 25 1 1.6051 1.9816 -0.8417 26 1 1.7518 1.9297 0.9314 27 1 1.7619 -1.7741 1.1999 28 1 1.5963 -0.2694 2.1363 29 1 3.4008 -2.1550 -0.1087 30 1 4.7190 -0.9776 -0.3647 31 1 4.6264 -3.3677 1.4676 32 1 6.0355 -2.6022 0.6632 33 1 8.5767 -3.5322 2.6463 34 1 4.1079 0.0328 3.2492 35 1 3.3088 -1.5685 3.1978 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405182471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:45 Heat of formation + Delta-G solvation = 18.442786 kcal Electronic energy + Delta-G solvation = -15407.232564 eV Core-core repulsion = 13018.804716 eV Total energy + Delta-G solvation = -2388.427848 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.11781 -36.74621 -34.76561 -32.80325 -30.04416 -28.24277 -27.32245 -25.66968 -23.82058 -22.45979 -19.89597 -19.56829 -17.02089 -16.22273 -15.32968 -14.68389 -14.56583 -14.38977 -13.75781 -13.47174 -12.87419 -12.58748 -12.49847 -12.33169 -12.03176 -11.96108 -11.87633 -11.39607 -11.21253 -11.02075 -10.91545 -10.83764 -10.55522 -10.47093 -10.08534 -9.64446 -9.24781 -8.87195 -8.40662 -7.71267 -6.03705 -4.07366 2.98925 3.00228 3.29111 3.36216 3.38661 3.99903 4.37234 4.50311 4.87643 5.01136 5.14034 5.30160 5.48454 5.57432 5.69038 5.71800 5.82249 5.93399 5.96610 6.01117 6.13814 6.22526 6.39944 6.48117 6.52844 6.80197 7.10025 7.13986 7.59500 7.60456 7.67932 7.79047 7.83780 7.99980 8.40087 8.95466 9.57154 11.06318 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050980 B = 0.006534 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.103513 B = 4284.030218 C = 4505.324508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 C -0.127 4.127 4 C 0.224 3.776 5 N -0.444 5.444 6 C 0.060 3.940 7 N -0.531 5.531 8 C 0.036 3.964 9 C -0.119 4.119 10 C 0.049 3.951 11 H 0.041 0.959 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.047 3.953 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.260 0.740 34 H 0.065 0.935 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.843 6.878 -2.307 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 C -0.185 4.185 4 C -0.094 4.094 5 N -0.119 5.119 6 C -0.070 4.070 7 N -0.255 5.255 8 C -0.092 4.092 9 C -0.158 4.158 10 C 0.030 3.970 11 H 0.059 0.941 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.080 4.080 21 H 0.096 0.904 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.963 6.512 -3.925 14.175 hybrid contribution 0.004 -1.411 1.229 1.871 sum -11.959 5.102 -2.695 13.278 Atomic orbital electron populations 1.21862 0.91873 1.02884 1.03225 1.18440 0.95561 0.95883 0.86994 1.21708 1.03333 0.91487 1.02014 1.29051 0.92860 0.93387 0.94080 1.81174 1.08997 1.09359 1.12403 1.22312 0.90844 0.98289 0.95534 1.63606 1.03066 1.51168 1.07670 1.23036 0.97118 0.93499 0.95497 1.22726 0.97625 0.97468 0.98026 1.19732 0.90574 0.93780 0.92880 0.94086 1.21031 1.03774 1.27163 1.03431 0.92573 1.24982 0.96250 0.96691 0.95920 1.69966 1.10434 1.42044 1.30120 0.86617 0.77557 0.80903 0.83052 1.20777 1.21213 1.19847 1.23180 0.98671 0.98742 0.87362 0.90432 0.91773 0.91993 0.90327 0.92992 0.90904 0.94182 0.89389 0.94582 0.92149 0.93455 0.91272 0.92986 0.91669 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.43 37.16 0.31 -0.85 16 2 C 0.04 0.41 0.78 -157.30 -0.12 0.29 16 3 C -0.13 -1.35 8.12 37.15 0.30 -1.05 16 4 C 0.22 3.37 10.91 -20.76 -0.23 3.14 16 5 N -0.44 -7.82 18.09 42.15 0.76 -7.05 16 6 C 0.06 0.83 3.88 -3.83 -0.01 0.81 16 7 N -0.53 -9.39 4.20 -231.25 -0.97 -10.36 16 8 C 0.04 0.73 5.30 -2.84 -0.02 0.71 16 9 C -0.12 -2.84 5.89 -24.91 -0.15 -2.99 16 10 C 0.05 1.22 2.84 -89.64 -0.25 0.97 16 11 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.52 -13.96 8.49 -34.44 -0.29 -14.25 16 13 H 0.06 1.49 7.77 -52.48 -0.41 1.08 16 14 C 0.06 1.76 5.37 -17.82 -0.10 1.67 16 15 N -0.89 -25.67 12.60 55.43 0.70 -24.97 16 16 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.05 0.94 6.06 -2.30 -0.01 0.93 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 1.03 7.64 -51.93 -0.40 0.63 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.58 7.72 -51.92 -0.40 0.18 16 28 H 0.09 1.02 7.97 -51.93 -0.41 0.61 16 29 H 0.04 0.71 5.57 -51.93 -0.29 0.42 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.16 8.03 -51.93 -0.42 0.74 16 32 H 0.07 1.79 7.83 -51.93 -0.41 1.38 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.04 0.73 7.68 -51.93 -0.40 0.33 16 LS Contribution 285.49 15.07 4.30 4.30 Total: -1.00 -29.62 285.49 -6.44 -36.07 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.65 Total: -3.51 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -0.57 Total: -10.62 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.49 Total: -42.38 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.62 -6.44 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405182471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.510 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds