Wall clock time and date at job start Mon Mar 30 2020 02:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46995 * 2 1 4 4 C 1.47205 * 109.46877 * 240.00065 * 2 1 3 5 5 N 2.60799 * 109.46758 * 240.00114 * 2 1 3 6 6 C 1.52995 * 109.47238 * 120.00186 * 2 1 3 7 7 N 1.46896 * 109.47196 * 185.66228 * 6 2 1 8 8 C 1.47444 * 111.00328 * 282.73974 * 7 6 2 9 9 C 1.54318 * 107.23582 * 236.74243 * 8 7 6 10 10 C 1.55140 * 103.01699 * 337.71453 * 9 8 7 11 11 H 1.08996 * 111.02621 * 277.54756 * 10 9 8 12 12 C 1.50695 * 110.99143 * 153.74600 * 10 9 8 13 13 H 1.08007 * 120.00114 * 247.73432 * 12 10 9 14 14 C 1.37874 * 120.00242 * 67.73034 * 12 10 9 15 15 N 1.31516 * 119.99721 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00278 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47359 * 90.00248 * 16 14 12 18 18 H 1.48505 * 109.47308 * 210.00172 * 16 14 12 19 19 H 1.48497 * 109.47388 * 329.99771 * 16 14 12 20 20 C 1.47848 * 111.00270 * 161.89716 * 7 6 2 21 21 H 1.08998 * 109.46788 * 299.99810 * 1 2 3 22 22 H 1.08998 * 109.47369 * 59.99909 * 1 2 3 23 23 H 1.09003 * 109.47289 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47226 * 185.01564 * 3 2 1 25 25 H 1.09005 * 109.47174 * 305.01335 * 3 2 1 26 26 H 1.08995 * 109.47217 * 65.01235 * 3 2 1 27 27 H 1.09008 * 109.47216 * 65.66357 * 6 2 1 28 28 H 1.09001 * 109.47428 * 305.66588 * 6 2 1 29 29 H 1.09001 * 109.88261 * 356.14829 * 8 7 6 30 30 H 1.08999 * 109.88790 * 117.33080 * 8 7 6 31 31 H 1.08998 * 110.70519 * 96.09346 * 9 8 7 32 32 H 1.08995 * 110.70326 * 219.32979 * 9 8 7 33 33 H 0.97001 * 120.00202 * 179.97438 * 15 14 12 34 34 H 1.09000 * 110.37008 * 265.19893 * 20 7 6 35 35 H 1.09000 * 110.36872 * 27.53103 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 -1.2019 5 7 2.3992 -1.2294 -2.1295 6 6 2.0400 -0.7213 1.2492 7 7 3.5026 -0.6040 1.3194 8 6 4.1532 -1.5365 0.3807 9 6 5.1073 -2.4251 1.2063 10 6 5.3684 -1.5722 2.4756 11 1 6.1469 -0.8308 2.2953 12 6 5.7220 -2.4471 3.6505 13 1 5.0429 -2.5292 4.4864 14 6 6.9124 -3.1427 3.6585 15 7 7.7390 -3.0431 2.6405 16 14 7.3504 -4.2278 5.1146 17 1 6.8361 -5.6011 4.8810 18 1 8.8263 -4.2721 5.2727 19 1 6.7371 -3.6727 6.3479 20 6 3.9924 -0.8922 2.6844 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1263 1.4438 -0.0898 25 1 1.6051 1.9816 -0.8417 26 1 1.7518 1.9297 0.9314 27 1 1.7619 -1.7741 1.1999 28 1 1.5963 -0.2694 2.1363 29 1 3.4008 -2.1550 -0.1087 30 1 4.7190 -0.9776 -0.3647 31 1 4.6264 -3.3677 1.4676 32 1 6.0355 -2.6022 0.6632 33 1 8.5767 -3.5322 2.6463 34 1 4.1079 0.0328 3.2492 35 1 3.3088 -1.5685 3.1978 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405182471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:45 Heat of formation + Delta-G solvation = -0.042797 kcal Electronic energy + Delta-G solvation = -15408.034159 eV Core-core repulsion = 13018.804716 eV Total energy + Delta-G solvation = -2389.229443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46190 -38.16232 -36.00215 -34.70936 -31.72225 -30.02220 -28.06565 -27.20078 -25.49778 -23.58985 -21.49120 -21.45176 -18.63827 -17.71493 -16.89814 -16.40840 -16.12308 -15.57257 -14.97936 -14.64536 -14.44227 -14.09685 -13.89282 -13.82307 -13.35869 -13.13779 -12.98949 -12.75074 -12.74325 -12.55429 -12.36306 -12.24199 -12.06619 -11.81655 -11.57072 -11.51727 -11.09124 -10.91690 -10.51563 -9.20086 -8.15030 -6.25779 1.41284 1.41860 1.52474 1.81135 1.84814 2.41749 2.97151 3.11313 3.17821 3.88875 4.00025 4.07617 4.20868 4.29353 4.46411 4.64049 4.68653 4.78936 4.80708 4.94085 5.04755 5.07220 5.10913 5.15085 5.19658 5.28063 5.37226 5.55328 5.60298 5.75134 5.88219 6.00155 6.27984 6.35270 6.63338 6.86045 7.42921 8.94853 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050980 B = 0.006534 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.103513 B = 4284.030218 C = 4505.324508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.038 3.962 3 C -0.125 4.125 4 C 0.238 3.762 5 N -0.498 5.498 6 C 0.055 3.945 7 N -0.526 5.526 8 C 0.055 3.945 9 C -0.114 4.114 10 C 0.038 3.962 11 H 0.005 0.995 12 C -0.529 4.529 13 H 0.062 0.938 14 C 0.009 3.991 15 N -0.924 5.924 16 Si 0.957 3.043 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.261 1.261 20 C 0.062 3.938 21 H 0.106 0.894 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.035 0.965 28 H 0.123 0.877 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.081 0.919 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 7.767 -0.871 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.034 3.966 3 C -0.183 4.183 4 C -0.079 4.079 5 N -0.174 5.174 6 C -0.074 4.074 7 N -0.250 5.250 8 C -0.073 4.073 9 C -0.153 4.153 10 C 0.019 3.981 11 H 0.024 0.976 12 C -0.567 4.567 13 H 0.080 0.920 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.185 1.185 20 C -0.065 4.065 21 H 0.125 0.875 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.141 0.859 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.423 7.412 -2.484 16.406 hybrid contribution 0.756 -1.657 0.770 1.977 sum -13.668 5.756 -1.713 14.929 Atomic orbital electron populations 1.21892 0.88531 1.03578 1.05271 1.18732 0.97947 0.95662 0.84220 1.21725 1.01495 0.90966 1.04147 1.29895 0.91496 0.92334 0.94183 1.81186 1.10826 1.11124 1.14284 1.22550 0.87863 0.98875 0.98106 1.63595 1.05797 1.49781 1.05804 1.22756 0.96400 0.93024 0.95146 1.22539 0.96936 0.97584 0.98221 1.19692 0.92480 0.93251 0.92647 0.97647 1.21439 1.03930 1.27149 1.04179 0.91960 1.25840 0.96353 0.98198 0.98575 1.70115 1.10843 1.43199 1.32163 0.85563 0.77140 0.78964 0.80053 1.20426 1.21208 1.18465 1.22966 0.95824 0.99020 0.88702 0.87487 0.90696 0.92039 0.93219 0.91301 0.88442 0.94651 0.85922 0.94071 0.93345 0.94730 0.94629 0.93155 0.90119 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.43 71.98 0.61 -1.05 16 2 C 0.04 0.78 0.78 -53.99 -0.04 0.74 16 3 C -0.13 -2.26 8.12 71.98 0.58 -1.68 16 4 C 0.24 6.85 10.91 89.44 0.98 7.83 16 5 N -0.50 -17.51 18.09 20.01 0.36 -17.15 16 6 C 0.06 1.34 3.88 86.30 0.33 1.68 16 7 N -0.53 -17.79 4.20 -885.54 -3.72 -21.51 16 8 C 0.05 2.23 5.30 86.65 0.46 2.68 16 9 C -0.11 -5.60 5.89 31.77 0.19 -5.41 16 10 C 0.04 1.94 2.84 -10.16 -0.03 1.91 16 11 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 12 C -0.53 -28.78 8.49 25.60 0.22 -28.56 16 13 H 0.06 3.24 7.77 -2.91 -0.02 3.22 16 14 C 0.01 0.50 5.37 84.65 0.45 0.96 16 15 N -0.92 -55.09 12.60 21.45 0.27 -54.82 16 16 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 C 0.06 2.38 6.06 86.77 0.53 2.91 16 21 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 1.21 7.64 -2.39 -0.02 1.19 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 0.92 7.72 -2.38 -0.02 0.91 16 28 H 0.12 2.22 7.97 -2.39 -0.02 2.20 16 29 H 0.04 1.62 5.57 -2.39 -0.01 1.60 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.74 8.03 -2.39 -0.02 1.72 16 32 H 0.03 1.94 7.83 -2.39 -0.02 1.92 16 33 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.04 1.65 7.68 -2.39 -0.02 1.63 16 Total: -1.00 -66.46 285.49 4.26 -62.19 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.05 Total: 3.70 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.28 Total: -18.01 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.09 Total: -93.48 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.46 4.26 -62.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405182471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.152 kcal (2) G-P(sol) polarization free energy of solvation -66.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds