Wall clock time and date at job start Mon Mar 30 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86804 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47186 * 239.99929 * 3 2 1 5 5 H 1.48506 * 109.46863 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47337 * 119.99752 * 3 2 1 7 7 C 1.39804 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.40439 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.40711 * 127.65536 * 0.02964 * 9 7 2 11 11 N 1.32194 * 109.34896 * 179.97438 * 10 9 7 12 12 C 1.32518 * 112.49363 * 359.97438 * 11 10 9 13 13 N 1.37476 * 134.03445 * 180.02562 * 12 11 10 14 14 H 0.97006 * 120.15712 * 359.94920 * 13 12 11 15 15 C 1.34231 * 119.67737 * 180.02562 * 13 12 11 16 16 N 1.30949 * 122.49053 * 359.95980 * 15 13 12 17 17 C 1.33291 * 121.78999 * 0.02562 * 16 15 13 18 18 Cl 1.73600 * 120.38988 * 180.02562 * 17 16 15 19 19 C 1.38462 * 119.21460 * 0.02562 * 17 16 15 20 20 H 0.96995 * 119.99733 * 0.02562 * 1 2 3 21 21 H 1.07995 * 125.32264 * 0.26182 * 10 9 7 22 22 H 1.08001 * 118.75883 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.0987 1.6963 -1.2125 5 1 1.2799 2.7465 -0.0006 6 1 3.0986 1.6964 1.2125 7 6 2.0098 -1.2107 -0.0005 8 1 3.0899 -1.2108 -0.0001 9 6 1.3076 -2.4270 -0.0005 10 6 -0.0869 -2.6144 -0.0006 11 7 -0.3549 -3.9089 -0.0011 12 6 0.7413 -4.6535 -0.0020 13 7 0.9764 -6.0080 -0.0032 14 1 0.2334 -6.6316 -0.0029 15 6 2.2391 -6.4634 -0.0033 16 7 3.2755 -5.6630 -0.0031 17 6 3.1388 -4.3371 -0.0022 18 17 4.5382 -3.3099 -0.0026 19 6 1.8673 -3.7889 -0.0010 20 1 -0.4849 0.8400 -0.0004 21 1 -0.8232 -1.8243 -0.0047 22 1 2.4067 -7.5303 -0.0039 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584640374.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:05 Heat of formation + Delta-G solvation = 58.813032 kcal Electronic energy + Delta-G solvation = -12562.610043 eV Core-core repulsion = 10143.716750 eV Total energy + Delta-G solvation = -2418.893293 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 223.021 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06256 -38.89031 -37.74858 -35.61886 -34.94706 -31.19795 -30.17931 -26.65404 -25.28127 -23.36459 -21.63625 -19.53258 -18.83847 -18.14220 -16.97540 -16.78889 -16.18694 -15.61449 -14.78014 -14.06452 -13.66334 -13.40090 -13.36027 -13.03443 -12.83216 -12.72865 -12.04838 -11.81558 -11.56478 -11.12441 -10.90132 -9.93895 -9.22619 -8.83509 -8.61883 -6.02374 -0.55567 0.84977 0.92136 1.38050 1.47663 1.51592 1.97883 2.19101 2.39612 3.00749 3.50027 3.51114 4.04151 4.29128 4.47570 4.90059 4.95547 5.15221 5.74723 5.90960 6.20394 6.45714 6.64438 6.83097 6.90115 7.07098 7.83913 8.31036 Molecular weight = 223.02amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.011655 C = 0.008633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.659504 B = 2401.876854 C = 3242.695128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.010 3.990 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.407 4.407 8 H 0.091 0.909 9 C 0.007 3.993 10 C -0.163 4.163 11 N -0.498 5.498 12 C 0.108 3.892 13 N -0.537 5.537 14 H 0.433 0.567 15 C 0.405 3.595 16 N -0.593 5.593 17 C 0.257 3.743 18 Cl -0.029 7.029 19 C -0.224 4.224 20 H 0.290 0.710 21 H 0.160 0.840 22 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -8.324 -0.009 10.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.204 4.204 3 Si 0.813 3.187 4 H -0.181 1.181 5 H -0.188 1.188 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.109 0.891 9 C 0.001 3.999 10 C -0.307 4.307 11 N -0.216 5.216 12 C -0.141 4.141 13 N -0.149 5.149 14 H 0.273 0.727 15 C 0.122 3.878 16 N -0.322 5.322 17 C 0.106 3.894 18 Cl 0.000 7.000 19 C -0.236 4.236 20 H 0.101 0.899 21 H 0.177 0.823 22 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 5.627 -8.438 -0.010 10.142 hybrid contribution -0.165 1.404 0.001 1.414 sum 5.462 -7.033 -0.009 8.905 Atomic orbital electron populations 1.69811 1.09115 1.30450 1.34266 1.27029 0.95764 1.04925 0.92677 0.85065 0.78566 0.74792 0.80314 1.18088 1.18810 1.18079 1.19559 0.95433 0.90121 1.38548 0.89146 1.19706 0.93659 0.89709 0.96873 1.23006 0.95160 0.89657 1.22886 1.68218 1.29484 1.05544 1.18399 1.18521 0.91185 0.84536 1.19865 1.41454 1.10339 1.04112 1.58981 0.72686 1.25851 0.76364 1.01502 0.84126 1.67679 1.31702 1.01549 1.31301 1.21529 0.85779 0.89730 0.92368 1.98345 1.41101 1.64877 1.95645 1.20890 0.92028 0.97502 1.13184 0.89934 0.82343 0.70134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.86 10.41 21.82 0.23 -43.64 14 2 C 0.01 0.53 5.50 85.18 0.47 1.00 14 3 Si 0.99 38.73 29.56 68.60 2.03 40.76 14 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 14 5 H -0.26 -9.67 7.11 99.48 0.71 -8.96 14 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 14 7 C -0.41 -22.52 9.16 23.19 0.21 -22.31 14 8 H 0.09 4.68 6.15 -2.91 -0.02 4.66 14 9 C 0.01 0.44 6.17 -19.77 -0.12 0.31 14 10 C -0.16 -9.87 10.85 85.24 0.92 -8.95 14 11 N -0.50 -27.66 11.03 -189.76 -2.09 -29.75 14 12 C 0.11 5.13 8.49 134.25 1.14 6.27 14 13 N -0.54 -16.22 5.34 -195.71 -1.05 -17.27 14 14 H 0.43 9.23 8.93 -92.70 -0.83 8.40 14 15 C 0.41 9.63 12.29 180.39 2.22 11.85 14 16 N -0.59 -20.05 10.37 -189.38 -1.96 -22.02 14 17 C 0.26 11.09 7.36 84.52 0.62 11.71 14 18 Cl -0.03 -1.14 27.27 -2.72 -0.07 -1.21 14 19 C -0.22 -11.45 6.29 -19.93 -0.13 -11.58 14 20 H 0.29 14.06 8.30 -92.71 -0.77 13.29 14 21 H 0.16 10.04 5.80 -2.91 -0.02 10.02 14 22 H 0.28 1.91 8.06 -2.91 -0.02 1.89 14 Total: -1.00 -76.29 218.64 2.88 -73.41 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.47 Total: 11.41 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.34 Total: -11.69 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -4.87 Total: -112.68 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -76.29 2.88 -73.41 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584640374.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.225 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds