Wall clock time and date at job start Mon Mar 30 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47358 * 2 1 4 4 C 1.53001 * 109.46835 * 240.00514 * 2 1 3 5 5 C 1.50700 * 109.47336 * 65.50068 * 4 2 1 6 6 H 1.07997 * 119.99764 * 5.08056 * 5 4 2 7 7 C 1.37880 * 119.99998 * 185.07416 * 5 4 2 8 8 N 1.31515 * 120.00141 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99970 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47090 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46939 * 120.00338 * 9 7 5 12 12 H 1.48496 * 109.46927 * 240.00430 * 9 7 5 13 13 N 1.46900 * 109.47595 * 120.00587 * 2 1 3 14 14 C 1.48721 * 111.01760 * 181.01824 * 13 2 1 15 15 C 1.54381 * 104.51525 * 158.96642 * 14 13 2 16 16 C 1.54258 * 105.15174 * 336.26303 * 15 14 13 17 17 C 1.52990 * 110.32665 * 241.05773 * 16 15 14 18 18 C 1.47202 * 110.32122 * 118.94787 * 16 15 14 19 19 N 5.43912 * 90.44435 * 116.69513 * 2 1 3 20 20 C 1.48566 * 110.99738 * 296.52698 * 13 2 1 21 21 H 1.08999 * 109.47358 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46678 * 299.99501 * 1 2 3 23 23 H 1.08998 * 109.47264 * 59.99033 * 1 2 3 24 24 H 1.09004 * 109.47423 * 185.50399 * 4 2 1 25 25 H 1.09006 * 109.47173 * 305.49971 * 4 2 1 26 26 H 0.96993 * 120.00002 * 180.02562 * 8 7 5 27 27 H 1.08998 * 110.39183 * 40.24267 * 14 13 2 28 28 H 1.09004 * 110.50395 * 277.74887 * 14 13 2 29 29 H 1.09006 * 110.31801 * 217.31845 * 15 14 13 30 30 H 1.08990 * 110.32353 * 95.21771 * 15 14 13 31 31 H 1.09003 * 109.47350 * 58.54495 * 17 16 15 32 32 H 1.09004 * 109.47563 * 178.54805 * 17 16 15 33 33 H 1.09010 * 109.47228 * 298.54591 * 17 16 15 34 34 H 1.08999 * 110.41308 * 82.17643 * 20 13 2 35 35 H 1.09002 * 110.41012 * 319.73635 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6519 0.0636 -2.4760 6 1 1.1697 1.0244 -2.3721 7 6 1.9125 -0.4450 -3.7308 8 7 2.4993 -1.6151 -3.8572 9 14 1.4308 0.5275 -5.2512 10 1 0.7897 1.8026 -4.8408 11 1 2.6438 0.8205 -6.0562 12 1 0.4765 -0.2673 -6.0653 13 7 2.0198 -0.6926 1.1993 14 6 3.5062 -0.6913 1.2464 15 6 3.8465 -0.9331 2.7327 16 6 2.6024 -0.4614 3.5131 17 6 2.9699 0.6860 4.4560 18 6 2.0209 -1.5801 4.2728 19 7 1.5722 -2.4434 4.8592 20 6 1.6132 0.0278 2.4334 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 3.1255 -0.8074 -1.2015 25 1 1.5983 -1.7165 -1.3000 26 1 2.6829 -1.9727 -4.7399 27 1 3.8957 0.2727 0.9192 28 1 3.9085 -1.4943 0.6287 29 1 4.7192 -0.3472 3.0214 30 1 4.0267 -1.9929 2.9122 31 1 3.3877 1.5110 3.8788 32 1 2.0769 1.0254 4.9808 33 1 3.7072 0.3392 5.1802 34 1 0.5913 -0.2342 2.7073 35 1 1.7059 1.1047 2.2929 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:03 Heat of formation + Delta-G solvation = -3.464255 kcal Electronic energy + Delta-G solvation = -15240.189759 eV Core-core repulsion = 12850.811950 eV Total energy + Delta-G solvation = -2389.377809 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72868 -37.72265 -36.09297 -34.43758 -32.03966 -30.45589 -28.41621 -27.12200 -25.16013 -23.37950 -22.46139 -20.69684 -18.63432 -18.20893 -16.64369 -16.36068 -15.99829 -15.28289 -14.87702 -14.78328 -14.59833 -14.20183 -13.97821 -13.80998 -13.39586 -13.21118 -13.04521 -12.80225 -12.77802 -12.65574 -12.30342 -12.14206 -12.04212 -11.82646 -11.73015 -11.53647 -11.13014 -11.01744 -10.50761 -9.25423 -8.15339 -6.24627 1.42190 1.43222 1.55452 1.72417 1.79259 2.43436 2.86213 3.17082 3.19011 3.58440 3.72360 4.05023 4.30648 4.37217 4.43048 4.52197 4.71907 4.72918 4.76682 4.87913 4.99894 5.01652 5.07855 5.15125 5.17739 5.28371 5.36077 5.45589 5.53350 5.73153 5.83348 6.06907 6.20113 6.40261 6.57518 6.92818 7.43861 8.97100 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.049901 B = 0.006035 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.970807 B = 4638.639728 C = 4710.217321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.088 3.912 3 H 0.040 0.960 4 C 0.039 3.961 5 C -0.527 4.527 6 H 0.064 0.936 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.533 5.533 14 C 0.034 3.966 15 C -0.101 4.101 16 C 0.034 3.966 17 C -0.131 4.131 18 C 0.248 3.752 19 N -0.492 5.492 20 C 0.045 3.955 21 H 0.036 0.964 22 H 0.066 0.934 23 H 0.054 0.946 24 H -0.005 1.005 25 H -0.014 1.014 26 H 0.261 0.739 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.121 0.879 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 8.388 13.767 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 H 0.058 0.942 4 C 0.002 3.998 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.182 1.182 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.258 5.258 14 C -0.093 4.093 15 C -0.140 4.140 16 C 0.030 3.970 17 C -0.189 4.189 18 C -0.069 4.069 19 N -0.167 5.167 20 C -0.084 4.084 21 H 0.056 0.944 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.013 0.987 25 H 0.004 0.996 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.516 6.420 14.512 15.941 hybrid contribution 0.189 0.745 -1.535 1.717 sum 1.704 7.164 12.977 14.921 Atomic orbital electron populations 1.21644 0.94385 1.00879 1.01246 1.21710 0.95819 0.94886 0.89532 0.94246 1.18979 0.94580 0.94566 0.91676 1.21631 1.38414 1.04794 0.91761 0.91808 1.25918 0.95306 0.95924 1.02616 1.70122 1.43948 1.19538 1.23994 0.85465 0.77915 0.79034 0.79034 1.18236 1.20604 1.20946 1.65439 1.08942 1.49381 1.02000 1.23079 0.88329 1.01038 0.96891 1.22499 0.96586 1.02719 0.92233 1.19193 0.95195 0.89127 0.93496 1.21932 1.03183 0.95279 0.98517 1.29395 0.92031 0.93610 0.91816 1.81190 1.10690 1.12212 1.12637 1.23270 0.98556 0.98291 0.88254 0.94442 0.91531 0.92689 0.98699 0.99575 0.93029 0.92608 0.92209 0.86064 0.91441 0.88363 0.90869 0.90213 0.90342 0.89759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.95 71.98 0.64 -3.89 16 2 C 0.09 3.47 1.85 44.91 0.08 3.55 16 3 H 0.04 1.49 7.98 -2.39 -0.02 1.47 16 4 C 0.04 2.03 4.45 29.85 0.13 2.16 16 5 C -0.53 -28.93 8.31 25.60 0.21 -28.72 16 6 H 0.06 3.32 7.29 -2.91 -0.02 3.30 16 7 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 8 N -0.94 -56.85 13.29 21.45 0.28 -56.57 16 9 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.53 -17.78 5.20 -855.88 -4.45 -22.23 16 14 C 0.03 1.01 5.40 86.42 0.47 1.48 16 15 C -0.10 -2.07 6.26 31.49 0.20 -1.88 16 16 C 0.03 0.67 0.95 -53.09 -0.05 0.62 16 17 C -0.13 -1.49 8.19 71.98 0.59 -0.90 16 18 C 0.25 6.53 13.61 89.44 1.22 7.75 16 19 N -0.49 -15.76 18.54 20.01 0.37 -15.39 16 20 C 0.05 1.08 4.56 86.45 0.39 1.47 16 21 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 22 H 0.07 1.93 7.03 -2.38 -0.02 1.91 16 23 H 0.05 2.12 7.09 -2.39 -0.02 2.10 16 24 H -0.01 -0.29 6.70 -2.38 -0.02 -0.30 16 25 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 26 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 28 H 0.06 2.09 7.55 -2.39 -0.02 2.07 16 29 H 0.12 1.61 7.71 -2.38 -0.02 1.59 16 30 H 0.07 1.52 7.69 -2.39 -0.02 1.50 16 31 H 0.10 0.81 8.12 -2.39 -0.02 0.79 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 1.94 7.39 -2.39 -0.02 1.93 16 35 H 0.08 1.66 7.63 -2.39 -0.02 1.64 16 Total: -1.00 -68.44 286.89 3.64 -64.80 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.05 Total: 1.66 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 4.35 Total: -17.91 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.79 Total: -94.18 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.44 3.64 -64.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.338 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds