Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47165 * 2 1 4 4 C 1.53004 * 109.47026 * 120.00312 * 2 1 3 5 5 C 1.50701 * 109.47217 * 183.18558 * 4 2 1 6 6 H 1.08003 * 119.99669 * 355.58857 * 5 4 2 7 7 C 1.37873 * 120.00157 * 175.58488 * 5 4 2 8 8 N 1.31522 * 119.99979 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99911 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47088 * 90.00033 * 9 7 5 11 11 H 1.48499 * 109.46733 * 209.99827 * 9 7 5 12 12 H 1.48501 * 109.47273 * 329.99741 * 9 7 5 13 13 N 1.46901 * 109.47061 * 240.00238 * 2 1 3 14 14 C 1.47433 * 111.00388 * 62.52931 * 13 2 1 15 15 C 1.54314 * 107.23881 * 236.74477 * 14 13 2 16 16 C 1.55145 * 103.01450 * 337.71292 * 15 14 13 17 17 C 1.53004 * 110.99012 * 153.74430 * 16 15 14 18 18 C 1.47200 * 111.02376 * 277.54694 * 16 15 14 19 19 N 5.33198 * 112.66546 * 232.14527 * 2 1 3 20 20 C 1.47848 * 110.99905 * 301.68562 * 13 2 1 21 21 H 1.08998 * 109.46993 * 307.01943 * 1 2 3 22 22 H 1.08996 * 109.46947 * 67.02463 * 1 2 3 23 23 H 1.08999 * 109.46853 * 187.02007 * 1 2 3 24 24 H 1.08997 * 109.47019 * 303.18446 * 4 2 1 25 25 H 1.09001 * 109.47063 * 63.18761 * 4 2 1 26 26 H 0.96992 * 119.99900 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.88960 * 356.14871 * 14 13 2 28 28 H 1.08996 * 109.89275 * 117.33245 * 14 13 2 29 29 H 1.09001 * 110.70927 * 96.09127 * 15 14 13 30 30 H 1.09001 * 110.70796 * 219.33230 * 15 14 13 31 31 H 1.08996 * 109.47482 * 307.73718 * 17 16 15 32 32 H 1.09000 * 109.46673 * 67.73447 * 17 16 15 33 33 H 1.08997 * 109.46815 * 187.73056 * 17 16 15 34 34 H 1.09001 * 110.37555 * 265.19413 * 20 13 2 35 35 H 1.09002 * 110.37546 * 27.42453 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5449 -0.6534 1.2894 6 1 4.0875 -0.2093 0.4679 7 6 4.2291 -1.1579 2.3749 8 7 5.5425 -1.0981 2.4101 9 14 3.2907 -1.9264 3.7955 10 1 3.1157 -3.3796 3.5446 11 1 4.0516 -1.7297 5.0554 12 1 1.9587 -1.2810 3.9157 13 7 2.0197 -0.6925 -1.1995 14 6 1.5972 0.0102 -2.4248 15 6 0.8127 -1.0024 -3.2853 16 6 1.3209 -2.3721 -2.7633 17 6 0.2725 -3.4649 -2.9812 18 6 2.5987 -2.7374 -3.3963 19 7 3.5847 -3.0193 -3.8848 20 6 1.5127 -2.0802 -1.2541 21 1 -0.3633 0.6187 0.8205 22 1 -0.3633 0.4011 -0.9461 23 1 -0.3633 -1.0200 0.1256 24 1 1.6308 -0.2416 2.1383 25 1 1.7241 -1.7642 1.2211 26 1 6.0238 -1.4534 3.1736 27 1 0.9557 0.8528 -2.1666 28 1 2.4724 0.3617 -2.9712 29 1 -0.2597 -0.9004 -3.1188 30 1 1.0534 -0.8789 -4.3412 31 1 -0.6812 -3.1420 -2.5637 32 1 0.1574 -3.6502 -4.0491 33 1 0.5944 -4.3811 -2.4861 34 1 2.2413 -2.7676 -0.8243 35 1 0.5618 -2.1579 -0.7270 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = 5.451634 kcal Electronic energy + Delta-G solvation = -15640.502623 eV Core-core repulsion = 13251.511436 eV Total energy + Delta-G solvation = -2388.991187 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95076 -37.69323 -35.86156 -34.39847 -32.18070 -29.87640 -29.51115 -26.87123 -24.80550 -23.60034 -22.52828 -20.33239 -18.76912 -18.29266 -16.89200 -16.32075 -15.71091 -15.38891 -14.87448 -14.69511 -14.63662 -14.33907 -14.04629 -13.71286 -13.51555 -13.37226 -13.22168 -12.75903 -12.68903 -12.56089 -12.49224 -11.96696 -11.79749 -11.70196 -11.59164 -11.50424 -11.25723 -11.10988 -10.67411 -8.82775 -8.17004 -6.17128 1.37276 1.39760 1.50473 1.74238 1.81462 2.42537 2.93548 3.13762 3.27666 3.60020 3.74126 4.04069 4.26230 4.39353 4.45542 4.51183 4.65958 4.74026 4.87806 4.88825 4.93221 5.04356 5.06554 5.13708 5.17863 5.21702 5.29174 5.36323 5.42232 5.66051 5.78104 6.36446 6.38468 6.57444 6.62415 6.94054 7.44266 9.00990 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.028757 B = 0.008877 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.435465 B = 3153.527540 C = 3465.752249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.093 3.907 3 H 0.057 0.943 4 C -0.006 4.006 5 C -0.492 4.492 6 H 0.028 0.972 7 C -0.011 4.011 8 N -0.964 5.964 9 Si 0.948 3.052 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.237 1.237 13 N -0.545 5.545 14 C 0.032 3.968 15 C -0.109 4.109 16 C 0.021 3.979 17 C -0.127 4.127 18 C 0.248 3.752 19 N -0.499 5.499 20 C 0.060 3.940 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.730 -1.212 -8.874 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 H 0.075 0.925 4 C -0.044 4.044 5 C -0.531 4.531 6 H 0.046 0.954 7 C -0.205 4.205 8 N -0.607 5.607 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.160 1.160 13 N -0.269 5.269 14 C -0.095 4.095 15 C -0.148 4.148 16 C 0.017 3.983 17 C -0.186 4.186 18 C -0.069 4.069 19 N -0.174 5.174 20 C -0.069 4.069 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.145 0.855 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.541 -1.664 -9.484 20.010 hybrid contribution 0.003 -0.133 1.023 1.031 sum -17.538 -1.797 -8.461 19.555 Atomic orbital electron populations 1.22457 0.95138 1.02849 1.03087 1.21642 0.93292 0.96868 0.89719 0.92517 1.19658 0.93997 0.96091 0.94630 1.21388 0.92369 1.36403 1.02907 0.95352 1.26091 0.95559 0.97087 1.01783 1.70123 1.08793 1.49739 1.32071 0.85697 0.79927 0.79222 0.77980 1.19696 1.21872 1.16034 1.63484 1.59194 1.02052 1.02193 1.22920 0.98256 0.97818 0.90529 1.22961 1.02282 0.89196 1.00379 1.19640 0.85355 0.99297 0.94038 1.21790 0.97094 0.95781 1.03913 1.29465 0.94398 0.91280 0.91777 1.81159 1.12590 1.11304 1.12385 1.23120 1.00367 0.90513 0.92896 0.91860 0.90326 0.91299 0.95632 0.96160 0.93216 0.90151 0.93501 0.85473 0.89324 0.87320 0.90238 0.91896 0.93533 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 8.54 71.98 0.62 -3.53 16 2 C 0.09 3.29 2.18 44.92 0.10 3.39 16 3 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.01 -0.28 3.42 29.85 0.10 -0.18 16 5 C -0.49 -28.72 9.36 25.60 0.24 -28.48 16 6 H 0.03 1.89 7.94 -2.91 -0.02 1.87 16 7 C -0.01 -0.67 5.47 84.65 0.46 -0.21 16 8 N -0.96 -63.60 13.96 21.45 0.30 -63.30 16 9 Si 0.95 44.90 27.56 68.60 1.89 46.79 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.24 -10.01 6.42 99.48 0.64 -9.37 16 13 N -0.55 -18.97 4.79 -860.38 -4.12 -23.09 16 14 C 0.03 0.83 6.07 86.65 0.53 1.36 16 15 C -0.11 -1.88 5.89 31.78 0.19 -1.69 16 16 C 0.02 0.47 0.89 -52.60 -0.05 0.42 16 17 C -0.13 -1.73 8.63 71.98 0.62 -1.11 16 18 C 0.25 7.93 13.82 89.44 1.24 9.17 16 19 N -0.50 -19.41 18.54 20.01 0.37 -19.04 16 20 C 0.06 1.75 4.06 86.77 0.35 2.10 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 22 H 0.08 1.40 6.32 -2.39 -0.02 1.39 16 23 H 0.07 1.44 6.23 -2.39 -0.01 1.43 16 24 H 0.03 1.11 6.89 -2.39 -0.02 1.10 16 25 H 0.02 0.87 6.72 -2.39 -0.02 0.85 16 26 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 27 H 0.08 1.73 6.22 -2.39 -0.01 1.72 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 1.22 7.99 -2.39 -0.02 1.21 16 30 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 31 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 35 H 0.10 2.24 5.37 -2.39 -0.01 2.22 16 Total: -1.00 -77.74 280.64 3.83 -73.91 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.99 Total: 3.48 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.39 Total: -18.76 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.45 Total: -105.43 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.89 Total: 46.79 kcal Total: -77.74 3.83 -73.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.364 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds