Wall clock time and date at job start Mon Mar 30 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47254 * 120.00428 * 2 1 3 5 5 C 1.50696 * 109.47361 * 185.00075 * 4 2 1 6 6 H 1.07997 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00113 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99828 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47158 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46856 * 119.99778 * 9 7 5 12 12 H 1.48504 * 109.46534 * 239.99593 * 9 7 5 13 13 N 1.46901 * 109.46759 * 240.00029 * 2 1 3 14 14 C 1.47442 * 111.00519 * 306.18009 * 13 2 1 15 15 C 1.54316 * 107.23195 * 123.25763 * 14 13 2 16 16 C 1.55134 * 103.02112 * 22.28606 * 15 14 13 17 17 C 1.52998 * 110.99051 * 206.25420 * 16 15 14 18 18 C 1.47201 * 110.99184 * 82.47594 * 16 15 14 19 19 N 5.33249 * 113.73601 * 247.25199 * 2 1 3 20 20 C 1.47845 * 110.99805 * 67.02470 * 13 2 1 21 21 H 1.08998 * 109.46939 * 66.17372 * 1 2 3 22 22 H 1.08993 * 109.47102 * 186.18116 * 1 2 3 23 23 H 1.09004 * 109.46731 * 306.17381 * 1 2 3 24 24 H 1.09009 * 109.47008 * 304.99711 * 4 2 1 25 25 H 1.09000 * 109.47227 * 64.99553 * 4 2 1 26 26 H 0.96998 * 120.00035 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.88971 * 242.66818 * 14 13 2 28 28 H 1.09008 * 109.88191 * 3.85191 * 14 13 2 29 29 H 1.09001 * 110.70357 * 140.67011 * 15 14 13 30 30 H 1.09001 * 110.70511 * 263.89739 * 15 14 13 31 31 H 1.09004 * 109.47040 * 58.54635 * 17 16 15 32 32 H 1.08995 * 109.47297 * 178.54852 * 17 16 15 33 33 H 1.09006 * 109.47258 * 298.54967 * 17 16 15 34 34 H 1.08994 * 110.37393 * 332.46436 * 20 13 2 35 35 H 1.09004 * 110.37398 * 94.80260 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2305 -1.1937 2.3577 8 7 3.5765 -1.8381 3.2993 9 14 6.0923 -1.0625 2.4360 10 1 6.5839 -0.2929 1.2650 11 1 6.4872 -0.3670 3.6872 12 1 6.6855 -2.4237 2.4178 13 7 2.0196 -0.6925 -1.1995 14 6 1.4297 -2.0392 -1.3100 15 6 0.7216 -2.1171 -2.6789 16 6 1.4320 -1.0116 -3.5034 17 6 0.5165 -0.4769 -4.6065 18 6 2.6988 -1.5059 -4.0669 19 7 3.6765 -1.8875 -4.5017 20 6 1.6882 0.0685 -2.4229 21 1 -0.3633 0.4151 -0.9401 22 1 -0.3633 -1.0216 0.1106 23 1 -0.3633 0.6066 0.8296 24 1 1.6055 -0.2618 2.1370 25 1 1.7517 -1.7716 1.2055 26 1 4.0609 -2.2449 4.0347 27 1 2.2145 -2.7935 -1.2550 28 1 0.7067 -2.1941 -0.5091 29 1 0.8722 -3.0953 -3.1356 30 1 -0.3413 -1.8983 -2.5760 31 1 -0.3951 -0.0787 -4.1609 32 1 1.0296 0.3145 -5.1527 33 1 0.2626 -1.2857 -5.2918 34 1 0.7918 0.6682 -2.2657 35 1 2.5250 0.7042 -2.7128 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595842200.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:10 Heat of formation + Delta-G solvation = 3.338901 kcal Electronic energy + Delta-G solvation = -15537.182629 eV Core-core repulsion = 13148.099827 eV Total energy + Delta-G solvation = -2389.082802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92142 -37.69647 -35.88188 -34.40012 -31.68594 -30.31527 -29.05255 -26.65105 -25.05273 -23.25953 -23.23586 -20.15011 -18.45297 -18.04543 -17.15826 -16.50662 -15.65038 -15.32797 -14.93686 -14.69536 -14.49270 -14.12810 -13.85049 -13.62339 -13.43148 -13.39097 -13.16270 -12.75823 -12.65094 -12.56947 -12.46842 -12.34889 -11.96568 -11.75269 -11.61464 -11.58666 -11.08307 -10.94124 -10.49679 -8.84868 -8.12484 -6.15947 1.35514 1.37734 1.49854 1.74105 1.82687 2.44086 2.93586 3.17431 3.29131 3.58789 3.74974 4.03615 4.30689 4.40353 4.48902 4.54904 4.65356 4.74439 4.86877 4.89143 4.99096 5.04878 5.09548 5.13740 5.26572 5.33474 5.38774 5.41836 5.51669 5.74169 5.91624 6.33544 6.39297 6.55662 6.62803 6.99171 7.49758 8.99394 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030320 B = 0.008327 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.252678 B = 3361.625866 C = 3908.650777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.064 0.936 4 C 0.035 3.965 5 C -0.499 4.499 6 H 0.052 0.948 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.286 1.286 13 N -0.538 5.538 14 C 0.040 3.960 15 C -0.112 4.112 16 C 0.025 3.975 17 C -0.126 4.126 18 C 0.249 3.751 19 N -0.497 5.497 20 C 0.053 3.947 21 H 0.083 0.917 22 H 0.056 0.944 23 H 0.056 0.944 24 H -0.005 1.005 25 H -0.004 1.004 26 H 0.258 0.742 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 3.858 -13.672 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 H 0.083 0.917 4 C -0.002 4.002 5 C -0.538 4.538 6 H 0.070 0.930 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.774 3.226 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.212 1.212 13 N -0.262 5.262 14 C -0.088 4.088 15 C -0.152 4.152 16 C 0.021 3.979 17 C -0.184 4.184 18 C -0.068 4.068 19 N -0.172 5.172 20 C -0.076 4.076 21 H 0.102 0.898 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.916 3.158 -14.124 17.544 hybrid contribution 0.452 -0.156 0.886 1.007 sum -9.464 3.002 -13.239 16.548 Atomic orbital electron populations 1.22429 0.95958 1.02119 1.02768 1.21723 0.92931 0.97051 0.90141 0.91738 1.19062 0.94616 0.94472 0.92072 1.21565 0.93865 1.32037 1.06286 0.92991 1.25773 1.02331 0.95863 0.95967 1.70071 1.36740 1.38120 1.13066 0.85652 0.81456 0.77543 0.77903 1.19586 1.20250 1.21222 1.63526 1.58303 1.02365 1.02040 1.22757 0.96943 0.91206 0.97908 1.22973 1.01193 0.98264 0.92730 1.19561 0.85441 0.96666 0.96236 1.21784 0.98707 1.01998 0.95929 1.29393 0.94281 0.91859 0.91262 1.81170 1.12739 1.10792 1.12518 1.23281 1.01937 0.95059 0.87290 0.89848 0.92536 0.92527 0.98716 0.98556 0.93280 0.94718 0.91704 0.89835 0.85859 0.87607 0.91171 0.90448 0.88449 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.79 8.56 71.98 0.62 -4.18 16 2 C 0.09 3.37 2.22 44.92 0.10 3.47 16 3 H 0.06 2.48 8.11 -2.39 -0.02 2.46 16 4 C 0.03 1.78 4.36 29.85 0.13 1.91 16 5 C -0.50 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 9 Si 0.95 47.08 29.54 68.60 2.03 49.11 16 10 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 13 N -0.54 -18.87 4.84 -860.37 -4.17 -23.04 16 14 C 0.04 1.27 5.39 86.65 0.47 1.73 16 15 C -0.11 -2.25 5.89 31.77 0.19 -2.06 16 16 C 0.03 0.51 0.89 -52.60 -0.05 0.47 16 17 C -0.13 -1.40 8.62 71.98 0.62 -0.78 16 18 C 0.25 7.31 13.82 89.44 1.24 8.55 16 19 N -0.50 -17.87 18.54 20.01 0.37 -17.50 16 20 C 0.05 1.29 5.38 86.77 0.47 1.76 16 21 H 0.08 1.64 6.21 -2.39 -0.01 1.63 16 22 H 0.06 1.56 6.23 -2.39 -0.01 1.54 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 25 H 0.00 -0.21 6.78 -2.39 -0.02 -0.23 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.06 2.11 4.82 -2.38 -0.01 2.10 16 29 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 30 H 0.12 1.60 8.04 -2.39 -0.02 1.59 16 31 H 0.11 0.64 8.10 -2.38 -0.02 0.62 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 1.77 5.82 -2.39 -0.01 1.75 16 35 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 Total: -1.00 -72.91 283.90 4.05 -68.86 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: 1.06 Total: -2.15 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.47 Total: -17.44 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -3.51 Total: -98.38 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -72.91 4.05 -68.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595842200.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.200 kcal (2) G-P(sol) polarization free energy of solvation -72.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds