Wall clock time and date at job start Mon Mar 30 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.47205 * 109.46587 * 119.99473 * 2 1 3 5 5 N 2.60807 * 109.46654 * 119.99549 * 2 1 3 6 6 N 1.46902 * 109.47424 * 239.99476 * 2 1 3 7 7 C 1.46891 * 111.00023 * 60.00072 * 6 2 1 8 8 C 1.52999 * 109.47519 * 198.81723 * 7 6 2 9 9 C 1.50694 * 109.47522 * 174.61464 * 8 7 6 10 10 H 1.07998 * 120.00105 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00135 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99725 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47315 * 59.99749 * 13 11 9 15 15 H 1.48503 * 109.47113 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47256 * 299.99694 * 13 11 9 17 17 C 1.46899 * 110.99653 * 183.95892 * 6 2 1 18 18 C 1.53007 * 117.49406 * 238.71557 * 17 6 2 19 19 C 1.52998 * 117.49578 * 170.09620 * 17 6 2 20 20 H 1.08991 * 109.47720 * 300.00402 * 1 2 3 21 21 H 1.08999 * 109.46933 * 60.00736 * 1 2 3 22 22 H 1.09002 * 109.47329 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46996 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.46631 * 299.99449 * 3 2 1 25 25 H 1.08997 * 109.47591 * 59.99240 * 3 2 1 26 26 H 1.08997 * 109.47420 * 318.82300 * 7 6 2 27 27 H 1.09002 * 109.47154 * 78.81687 * 7 6 2 28 28 H 1.08993 * 109.47173 * 294.62127 * 8 7 6 29 29 H 1.09007 * 109.46786 * 54.61311 * 8 7 6 30 30 H 0.96997 * 119.99667 * 179.97438 * 12 11 9 31 31 H 1.08995 * 115.55544 * 24.42153 * 17 6 2 32 32 H 1.08999 * 117.49620 * 0.02562 * 18 17 6 33 33 H 1.08994 * 117.49665 * 145.02637 * 18 17 6 34 34 H 1.08997 * 117.50128 * 214.97300 * 19 17 6 35 35 H 1.09007 * 117.50303 * 359.97312 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 7 2.0198 -0.6926 -1.1994 7 6 1.5488 -0.0266 -2.4210 8 6 1.6610 -0.9911 -3.6034 9 6 1.0565 -0.3560 -4.8290 10 1 0.6348 0.6365 -4.7706 11 6 1.0417 -1.0421 -6.0249 12 7 1.5547 -2.2509 -6.0959 13 14 0.2929 -0.2544 -7.5442 14 1 1.0198 1.0015 -7.8600 15 1 0.4006 -1.1912 -8.6915 16 1 -1.1375 0.0523 -7.2889 17 6 3.4851 -0.7947 -1.1867 18 6 4.2471 -0.1655 -2.3549 19 6 4.1401 -1.6876 -2.2424 20 1 -0.3634 0.5138 0.8898 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6767 1.9562 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 0.5085 0.2727 -2.2937 27 1 2.1598 0.8555 -2.6125 28 1 2.7110 -1.2156 -3.7908 29 1 1.1281 -1.9134 -3.3717 30 1 1.5440 -2.7336 -6.9371 31 1 3.9508 -0.7550 -0.2021 32 1 3.6611 0.3245 -3.1324 33 1 5.2142 0.2884 -2.1388 34 1 5.0369 -2.2350 -1.9524 35 1 3.4837 -2.1997 -2.9461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:26 Heat of formation + Delta-G solvation = 70.076508 kcal Electronic energy + Delta-G solvation = -15586.156911 eV Core-core repulsion = 13199.968069 eV Total energy + Delta-G solvation = -2386.188842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.72241 -36.59652 -34.77572 -33.21836 -30.93504 -28.84599 -27.35512 -25.09367 -22.65557 -21.99397 -21.08341 -19.36668 -17.60797 -16.08393 -15.72944 -15.28245 -14.50301 -14.28348 -13.81095 -13.42517 -13.09397 -12.62458 -12.53880 -12.30564 -12.04098 -11.76417 -11.71164 -11.44657 -11.34874 -11.04243 -10.75718 -10.72844 -10.68605 -10.40869 -9.89290 -9.57607 -9.42408 -8.97509 -8.31060 -7.71363 -6.01374 -4.03551 2.78329 2.88954 3.31746 3.37300 3.38538 3.94177 4.11267 4.43100 4.48162 4.90975 5.04271 5.34499 5.35948 5.40050 5.52359 5.58548 5.64017 5.69353 5.83797 6.01380 6.06985 6.16178 6.17967 6.30928 6.39271 6.65830 6.81248 6.97206 7.29100 7.43459 7.66655 7.74439 7.87529 8.05314 8.39547 9.03051 9.59869 11.09641 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.007602 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.537011 B = 3682.411685 C = 4014.198628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.201 3.799 3 C -0.175 4.175 4 C 0.233 3.767 5 N -0.442 5.442 6 N -0.491 5.491 7 C 0.050 3.950 8 C 0.012 3.988 9 C -0.523 4.523 10 H 0.053 0.947 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.010 3.990 18 C -0.213 4.213 19 C -0.173 4.173 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 6.527 8.709 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.108 3.892 3 C -0.235 4.235 4 C -0.086 4.086 5 N -0.118 5.118 6 N -0.214 5.214 7 C -0.075 4.075 8 C -0.025 4.025 9 C -0.562 4.562 10 H 0.071 0.929 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.099 4.099 18 C -0.252 4.252 19 C -0.210 4.210 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.138 0.862 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.235 5.082 10.007 11.291 hybrid contribution -0.114 1.286 -1.258 1.802 sum 1.121 6.368 8.749 10.880 Atomic orbital electron populations 1.21960 0.90737 1.04096 1.03128 1.18609 0.96356 0.90489 0.83723 1.22498 1.02286 0.95054 1.03643 1.29001 0.92660 0.92951 0.93966 1.81135 1.09219 1.09002 1.12394 1.62377 1.07680 1.50216 1.01126 1.22733 0.99082 0.97304 0.88407 1.19542 0.98955 0.94503 0.89496 1.21129 1.39046 1.01778 0.94275 0.92903 1.24952 0.95493 0.94843 0.98808 1.69944 1.45294 1.11496 1.26278 0.86700 0.79779 0.79090 0.82648 1.20330 1.21357 1.20297 1.22489 0.86921 1.06569 0.93922 1.23644 1.01609 0.97176 1.02729 1.23521 1.02055 0.93308 1.02163 0.91751 0.89670 0.90772 0.91670 0.89905 0.91739 0.90994 0.94283 0.94034 0.95682 0.92930 0.88242 0.86156 0.89987 0.89883 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.26 37.16 0.31 -1.39 16 2 C 0.20 2.75 0.64 -134.39 -0.09 2.67 16 3 C -0.17 -2.00 7.88 37.16 0.29 -1.71 16 4 C 0.23 3.53 12.38 -20.76 -0.26 3.27 16 5 N -0.44 -7.45 18.54 42.15 0.78 -6.67 16 6 N -0.49 -8.17 4.47 -214.33 -0.96 -9.13 16 7 C 0.05 0.92 3.33 -3.83 -0.01 0.91 16 8 C 0.01 0.29 3.82 -27.89 -0.11 0.18 16 9 C -0.52 -13.77 9.11 -34.44 -0.31 -14.08 16 10 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 C 0.01 0.17 4.55 -67.71 -0.31 -0.14 16 18 C -0.21 -3.46 9.02 -26.73 -0.24 -3.70 16 19 C -0.17 -3.03 9.55 -26.73 -0.26 -3.28 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.08 1.01 6.06 -51.93 -0.31 0.69 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.76 7.31 -51.93 -0.38 0.38 16 24 H 0.08 0.93 6.85 -51.93 -0.36 0.57 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.26 5.55 -51.93 -0.29 0.97 16 27 H 0.04 0.69 5.38 -51.93 -0.28 0.41 16 28 H 0.04 1.02 3.83 -51.93 -0.20 0.82 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.10 1.55 6.81 -51.93 -0.35 1.20 16 32 H 0.12 2.20 4.90 -51.93 -0.25 1.95 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.13 2.65 5.43 -51.93 -0.28 2.37 16 LS Contribution 278.15 15.07 4.19 4.19 Total: -1.00 -28.73 278.15 -6.13 -34.86 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -4.78 Total: 1.61 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.08 Total: -15.71 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.56 Total: -40.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.73 -6.13 -34.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.940 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds