Wall clock time and date at job start Mon Mar 30 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 C 1.47205 * 109.46587 * 119.99473 * 2 1 3 5 5 N 2.60807 * 109.46654 * 119.99549 * 2 1 3 6 6 N 1.46902 * 109.47424 * 239.99476 * 2 1 3 7 7 C 1.46891 * 111.00023 * 60.00072 * 6 2 1 8 8 C 1.52999 * 109.47519 * 198.81723 * 7 6 2 9 9 C 1.50694 * 109.47522 * 174.61464 * 8 7 6 10 10 H 1.07998 * 120.00105 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99961 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00135 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99725 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47315 * 59.99749 * 13 11 9 15 15 H 1.48503 * 109.47113 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47256 * 299.99694 * 13 11 9 17 17 C 1.46899 * 110.99653 * 183.95892 * 6 2 1 18 18 C 1.53007 * 117.49406 * 238.71557 * 17 6 2 19 19 C 1.52998 * 117.49578 * 170.09620 * 17 6 2 20 20 H 1.08991 * 109.47720 * 300.00402 * 1 2 3 21 21 H 1.08999 * 109.46933 * 60.00736 * 1 2 3 22 22 H 1.09002 * 109.47329 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46996 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.46631 * 299.99449 * 3 2 1 25 25 H 1.08997 * 109.47591 * 59.99240 * 3 2 1 26 26 H 1.08997 * 109.47420 * 318.82300 * 7 6 2 27 27 H 1.09002 * 109.47154 * 78.81687 * 7 6 2 28 28 H 1.08993 * 109.47173 * 294.62127 * 8 7 6 29 29 H 1.09007 * 109.46786 * 54.61311 * 8 7 6 30 30 H 0.96997 * 119.99667 * 179.97438 * 12 11 9 31 31 H 1.08995 * 115.55544 * 24.42153 * 17 6 2 32 32 H 1.08999 * 117.49620 * 0.02562 * 18 17 6 33 33 H 1.08994 * 117.49665 * 145.02637 * 18 17 6 34 34 H 1.08997 * 117.50128 * 214.97300 * 19 17 6 35 35 H 1.09007 * 117.50303 * 359.97312 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 7 2.3992 -1.2293 2.1296 6 7 2.0198 -0.6926 -1.1994 7 6 1.5488 -0.0266 -2.4210 8 6 1.6610 -0.9911 -3.6034 9 6 1.0565 -0.3560 -4.8290 10 1 0.6348 0.6365 -4.7706 11 6 1.0417 -1.0421 -6.0249 12 7 1.5547 -2.2509 -6.0959 13 14 0.2929 -0.2544 -7.5442 14 1 1.0198 1.0015 -7.8600 15 1 0.4006 -1.1912 -8.6915 16 1 -1.1375 0.0523 -7.2889 17 6 3.4851 -0.7947 -1.1867 18 6 4.2471 -0.1655 -2.3549 19 6 4.1401 -1.6876 -2.2424 20 1 -0.3634 0.5138 0.8898 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6767 1.9562 -0.8901 25 1 1.6766 1.9564 0.8899 26 1 0.5085 0.2727 -2.2937 27 1 2.1598 0.8555 -2.6125 28 1 2.7110 -1.2156 -3.7908 29 1 1.1281 -1.9134 -3.3717 30 1 1.5440 -2.7336 -6.9371 31 1 3.9508 -0.7550 -0.2021 32 1 3.6611 0.3245 -3.1324 33 1 5.2142 0.2884 -2.1388 34 1 5.0369 -2.2350 -1.9524 35 1 3.4837 -2.1997 -2.9461 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685972759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:26 Heat of formation + Delta-G solvation = 52.411503 kcal Electronic energy + Delta-G solvation = -15586.922923 eV Core-core repulsion = 13199.968069 eV Total energy + Delta-G solvation = -2386.954854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.01260 -37.87730 -36.00492 -35.17334 -32.55001 -30.33288 -28.31279 -26.80526 -24.18866 -23.29794 -22.53003 -20.83486 -19.07557 -17.93296 -16.92525 -16.66621 -16.42856 -15.43914 -15.03906 -14.60024 -14.38681 -14.31262 -13.80035 -13.64942 -13.52762 -13.08523 -12.92427 -12.77586 -12.70159 -12.48559 -12.41031 -12.30385 -12.07157 -11.87352 -11.30361 -11.26151 -11.08156 -10.85258 -10.33840 -9.02873 -8.09486 -6.18093 1.46429 1.48226 1.54451 1.56703 1.70102 2.47432 2.77683 2.86709 3.15542 3.25303 3.89087 3.98862 4.04878 4.08844 4.24250 4.40717 4.65442 4.75029 4.76663 4.80888 4.88797 4.92688 5.01080 5.12725 5.22982 5.29682 5.37966 5.43636 5.62674 5.77929 5.94670 6.16443 6.22389 6.38961 6.49915 7.00761 7.49816 9.01802 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.007602 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.537011 B = 3682.411685 C = 4014.198628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.201 3.799 3 C -0.171 4.171 4 C 0.248 3.752 5 N -0.472 5.472 6 N -0.510 5.510 7 C 0.068 3.932 8 C 0.018 3.982 9 C -0.534 4.534 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.932 5.932 13 Si 0.956 3.044 14 H -0.267 1.267 15 H -0.291 1.291 16 H -0.268 1.268 17 C 0.021 3.979 18 C -0.200 4.200 19 C -0.192 4.192 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.030 0.970 29 H -0.016 1.016 30 H 0.259 0.741 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 8.742 9.395 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.109 3.891 3 C -0.230 4.230 4 C -0.070 4.070 5 N -0.148 5.148 6 N -0.233 5.233 7 C -0.057 4.057 8 C -0.020 4.020 9 C -0.573 4.573 10 H 0.082 0.918 11 C -0.195 4.195 12 N -0.572 5.572 13 Si 0.782 3.218 14 H -0.192 1.192 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.088 4.088 18 C -0.238 4.238 19 C -0.230 4.230 20 H 0.112 0.888 21 H 0.107 0.893 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.002 0.998 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.928 7.317 10.709 13.003 hybrid contribution -0.018 0.548 -1.432 1.533 sum 0.910 7.865 9.277 12.197 Atomic orbital electron populations 1.22008 0.89383 1.03736 1.04771 1.18811 0.97310 0.91434 0.81541 1.22484 1.02255 0.93119 1.05182 1.29230 0.91794 0.92199 0.93793 1.81157 1.10292 1.09876 1.13504 1.62147 1.08047 1.51379 1.01730 1.22359 1.00133 0.95952 0.87292 1.19403 0.97405 0.93889 0.91267 1.21633 1.38315 1.02162 0.95211 0.91831 1.25837 0.96116 0.95304 1.02197 1.70101 1.47074 1.13142 1.26893 0.85638 0.79307 0.78270 0.78620 1.19168 1.21704 1.19313 1.22502 0.86830 1.05343 0.94144 1.23573 1.02558 0.95791 1.01882 1.23408 1.02600 0.94295 1.02708 0.88819 0.89295 0.92192 0.91765 0.89367 0.89226 0.89900 0.93086 0.95164 0.99770 0.93184 0.86954 0.88228 0.87202 0.88083 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.26 71.98 0.59 -2.45 16 2 C 0.20 5.05 0.64 1.72 0.00 5.05 16 3 C -0.17 -3.31 7.88 71.98 0.57 -2.74 16 4 C 0.25 7.03 12.38 89.44 1.11 8.14 16 5 N -0.47 -15.22 18.54 20.01 0.37 -14.85 16 6 N -0.51 -16.49 4.47 -832.00 -3.72 -20.20 16 7 C 0.07 2.46 3.33 86.30 0.29 2.75 16 8 C 0.02 0.85 3.82 29.85 0.11 0.96 16 9 C -0.53 -28.24 9.11 25.60 0.23 -28.00 16 10 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 13 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 C 0.02 0.66 4.55 44.92 0.20 0.86 16 18 C -0.20 -6.25 9.02 30.60 0.28 -5.98 16 19 C -0.19 -6.80 9.55 30.59 0.29 -6.51 16 20 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.09 1.87 6.06 -2.39 -0.01 1.86 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.28 7.31 -2.39 -0.02 1.26 16 24 H 0.09 1.65 6.85 -2.39 -0.02 1.64 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 2.78 5.55 -2.39 -0.01 2.77 16 27 H 0.05 1.72 5.38 -2.39 -0.01 1.71 16 28 H 0.03 1.54 3.83 -2.39 -0.01 1.54 16 29 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.11 3.27 6.81 -2.39 -0.02 3.25 16 32 H 0.10 3.58 4.90 -2.39 -0.01 3.57 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.09 3.86 5.43 -2.38 -0.01 3.85 16 Total: -1.00 -62.87 278.15 4.19 -58.68 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.09 Total: 13.94 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.14 Total: -27.28 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.06 Total: -90.01 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -62.87 4.19 -58.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.088 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds