Wall clock time and date at job start Mon Mar 30 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99769 * 2 1 4 4 C 1.52997 * 109.47254 * 66.04707 * 3 2 1 5 5 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 6 6 H 1.08001 * 119.99890 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00432 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46756 * 59.99920 * 9 7 5 11 11 H 1.48490 * 109.47381 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47117 * 300.00527 * 9 7 5 13 13 C 1.46896 * 110.99805 * 236.04721 * 2 1 3 14 14 C 1.47201 * 110.01390 * 183.24976 * 13 2 1 15 15 N 3.40325 * 156.89796 * 230.07191 * 2 1 3 16 16 C 1.54267 * 110.03425 * 61.86296 * 13 2 1 17 17 C 1.54963 * 104.15806 * 217.13428 * 16 13 2 18 18 C 1.54889 * 102.77901 * 37.88582 * 17 16 13 19 19 C 1.53874 * 110.03577 * 304.64273 * 13 2 1 20 20 H 1.08995 * 109.47407 * 59.99898 * 1 2 3 21 21 H 1.09006 * 109.46770 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46848 * 299.99626 * 1 2 3 23 23 H 1.09002 * 109.47043 * 186.04778 * 3 2 1 24 24 H 1.09001 * 109.47354 * 306.04839 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00004 * 4 3 2 26 26 H 1.08998 * 109.47533 * 59.99633 * 4 3 2 27 27 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.48425 * 335.77846 * 16 13 2 29 29 H 1.08996 * 110.49013 * 98.42561 * 16 13 2 30 30 H 1.08999 * 110.72148 * 279.56933 * 17 16 13 31 31 H 1.09004 * 110.76433 * 156.21786 * 17 16 13 32 32 H 1.09002 * 110.48833 * 203.40225 * 18 17 16 33 33 H 1.09007 * 110.48347 * 80.76408 * 18 17 16 34 34 H 1.09007 * 110.03390 * 238.57383 * 19 13 2 35 35 H 1.09001 * 110.03093 * 359.97438 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 6 2.1720 3.4641 1.3185 6 1 2.7200 3.8322 0.4638 7 6 1.9661 4.2816 2.4096 8 7 1.2984 3.8335 3.4503 9 14 2.6367 6.0251 2.4102 10 1 2.0465 6.7829 1.2777 11 1 2.2823 6.6913 3.6891 12 1 4.1140 5.9873 2.2639 13 6 1.9955 -0.7659 -1.1376 14 6 3.4652 -0.8173 -1.0735 15 7 4.5994 -0.8571 -1.0240 16 6 1.5467 -0.1182 -2.4638 17 6 1.2737 -1.3222 -3.4004 18 6 0.6361 -2.3615 -2.4452 19 6 1.4172 -2.1918 -1.1258 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9274 -0.8309 25 1 0.5472 2.0844 1.4265 26 1 2.0658 1.5016 2.1492 27 1 1.1532 4.4087 4.2177 28 1 0.6370 0.4636 -2.3155 29 1 2.3402 0.5094 -2.8695 30 1 2.2047 -1.7032 -3.8201 31 1 0.5765 -1.0460 -4.1915 32 1 0.7652 -3.3701 -2.8380 33 1 -0.4209 -2.1425 -2.2938 34 1 2.2249 -2.9220 -1.0735 35 1 0.7462 -2.3156 -0.2758 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687715667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:57 Heat of formation + Delta-G solvation = 24.002426 kcal Electronic energy + Delta-G solvation = -15361.226021 eV Core-core repulsion = 12973.039256 eV Total energy + Delta-G solvation = -2388.186764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93097 -35.71584 -35.32417 -32.89185 -29.94174 -29.01927 -28.23927 -25.73128 -23.49998 -21.51561 -20.66674 -19.98981 -17.36418 -16.39568 -15.95106 -14.96014 -14.56617 -14.37908 -13.99054 -13.61821 -13.47443 -12.78610 -12.56130 -12.30032 -12.04091 -11.72286 -11.50052 -11.29220 -11.23429 -11.19668 -11.07351 -10.93752 -10.79413 -10.57651 -10.53586 -9.87705 -9.43200 -9.15831 -8.34009 -7.90204 -6.00587 -4.03025 2.90490 2.98793 3.33565 3.37918 3.40670 3.98249 4.30290 4.48934 4.50804 4.60389 4.97599 5.26029 5.34337 5.35564 5.38354 5.52265 5.66071 5.73313 5.76103 5.78380 5.92179 5.99570 6.07891 6.17183 6.25453 6.38544 6.45393 6.87866 7.30862 7.36784 7.71262 7.79911 7.86109 8.04006 8.40928 9.03364 9.60687 11.10708 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.041597 B = 0.006507 C = 0.006218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.962465 B = 4301.735138 C = 4501.840744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.526 5.526 3 C 0.057 3.943 4 C 0.030 3.970 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.201 3.799 14 C 0.234 3.766 15 N -0.435 5.435 16 C -0.149 4.149 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.114 4.114 20 H 0.029 0.971 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.021 0.979 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 -11.011 -11.620 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.250 5.250 3 C -0.069 4.069 4 C -0.007 4.007 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.107 3.893 14 C -0.085 4.085 15 N -0.111 5.111 16 C -0.190 4.190 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.152 4.152 20 H 0.048 0.952 21 H 0.085 0.915 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.926 -11.242 -10.904 15.933 hybrid contribution -0.211 1.537 -0.577 1.655 sum -3.137 -9.706 -11.481 15.357 Atomic orbital electron populations 1.22535 0.86497 1.01548 1.02034 1.62391 1.08551 1.16454 1.37618 1.22465 0.98544 0.84754 1.01167 1.19083 0.97052 0.94032 0.90573 1.21130 1.35328 0.97738 1.02056 0.92907 1.24971 0.95228 0.98463 0.95504 1.69957 1.40683 1.36507 1.06026 0.86660 0.79516 0.84636 0.77219 1.20257 1.21215 1.20245 1.19162 0.81805 0.96515 0.91775 1.28717 0.94443 0.92698 0.92622 1.81151 1.12722 1.08824 1.08405 1.23095 1.02852 0.98584 0.94435 1.22493 1.00811 0.95244 0.97532 1.22391 0.99751 0.99280 0.94676 1.22327 1.00379 0.93176 0.99360 0.95240 0.91492 0.89611 0.92412 0.95230 0.96116 0.95705 0.92907 0.89069 0.90949 0.91475 0.91035 0.91212 0.90969 0.91017 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.65 60.07 0.52 0.82 16 2 N -0.53 -8.92 4.56 -229.11 -1.05 -9.96 16 3 C 0.06 1.19 4.28 -3.83 -0.02 1.17 16 4 C 0.03 0.77 4.90 -27.89 -0.14 0.63 16 5 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 6 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.20 2.83 0.55 -133.27 -0.07 2.76 16 14 C 0.23 3.96 12.15 -20.76 -0.25 3.70 16 15 N -0.44 -8.27 18.54 42.15 0.78 -7.49 16 16 C -0.15 -1.80 4.74 -25.03 -0.12 -1.92 16 17 C -0.12 -1.13 6.91 -24.70 -0.17 -1.30 16 18 C -0.12 -1.04 6.83 -25.08 -0.17 -1.21 16 19 C -0.11 -1.24 5.53 -25.62 -0.14 -1.38 16 20 H 0.03 0.39 6.18 -51.93 -0.32 0.07 16 21 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 22 H 0.09 1.41 6.47 -51.93 -0.34 1.07 16 23 H 0.06 1.28 6.78 -51.93 -0.35 0.93 16 24 H 0.03 0.59 7.37 -51.93 -0.38 0.21 16 25 H 0.02 0.54 6.55 -51.93 -0.34 0.20 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.09 1.09 5.65 -51.93 -0.29 0.80 16 29 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.78 7.66 -51.93 -0.40 0.38 16 35 H 0.09 1.00 6.05 -51.93 -0.31 0.68 16 LS Contribution 279.59 15.07 4.21 4.21 Total: -1.00 -31.12 279.59 -6.41 -37.54 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.11 Total: -4.77 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.97 Total: -10.29 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.47 Total: -43.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.12 -6.41 -37.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.538 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds