Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46961 * 2 1 4 4 N 1.46895 * 109.46898 * 119.99855 * 2 1 3 5 5 C 1.46899 * 111.00141 * 292.90349 * 4 2 1 6 6 C 1.50695 * 109.47540 * 74.16886 * 5 4 2 7 7 H 1.08006 * 119.99877 * 4.88837 * 6 5 4 8 8 C 1.37881 * 120.00179 * 184.88652 * 6 5 4 9 9 N 1.31516 * 119.99923 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47317 * 90.00117 * 10 8 6 12 12 H 1.48496 * 109.46897 * 210.00005 * 10 8 6 13 13 H 1.48499 * 109.47312 * 329.99998 * 10 8 6 14 14 C 1.46903 * 111.00022 * 168.94465 * 4 2 1 15 15 C 1.52992 * 109.47058 * 288.22440 * 14 4 2 16 16 C 1.47207 * 115.56399 * 321.81673 * 15 14 4 17 17 N 4.01688 * 96.62916 * 179.45052 * 2 1 3 18 18 C 1.53000 * 117.50023 * 176.12360 * 15 14 4 19 19 C 1.52995 * 60.03683 * 252.50079 * 18 15 14 20 20 H 1.09005 * 109.47081 * 310.67681 * 1 2 3 21 21 H 1.09003 * 109.47055 * 70.67105 * 1 2 3 22 22 H 1.08996 * 109.47329 * 190.67603 * 1 2 3 23 23 H 1.08999 * 109.46849 * 240.00087 * 2 1 3 24 24 H 1.09004 * 109.47088 * 171.50018 * 3 2 1 25 25 H 1.08994 * 109.47368 * 291.50287 * 3 2 1 26 26 H 1.09006 * 109.47147 * 51.50194 * 3 2 1 27 27 H 1.09002 * 109.46734 * 194.17164 * 5 4 2 28 28 H 1.09002 * 109.47261 * 314.16476 * 5 4 2 29 29 H 0.96992 * 119.99688 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.46929 * 168.22347 * 14 4 2 31 31 H 1.08999 * 109.46456 * 48.22265 * 14 4 2 32 32 H 1.09005 * 117.49595 * 0.02562 * 18 15 14 33 33 H 1.09009 * 117.49901 * 144.99333 * 18 15 14 34 34 H 1.08994 * 117.50374 * 107.49535 * 19 18 15 35 35 H 1.08997 * 117.49691 * 252.52337 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6920 0.0645 2.4150 6 6 0.2212 -0.0748 2.7123 7 1 -0.3919 -0.7290 2.1102 8 6 -0.3418 0.6330 3.7531 9 7 0.4046 1.4301 4.4860 10 14 -2.1648 0.4598 4.1220 11 1 -2.3708 -0.6466 5.0910 12 1 -2.6748 1.7278 4.7028 13 1 -2.8978 0.1606 2.8658 14 6 3.4642 -0.9441 1.1093 15 6 3.7272 -2.0416 0.0764 16 6 2.7488 -3.1413 0.0548 17 7 1.9938 -3.9898 0.0383 18 6 5.1855 -2.3874 -0.2313 19 6 4.3485 -1.6223 -1.2584 20 1 -0.3633 0.6699 0.7794 21 1 -0.3633 0.3402 -0.9698 22 1 -0.3634 -1.0098 0.1904 23 1 1.8934 -0.5138 -0.8900 24 1 3.1194 1.4463 0.1519 25 1 1.8060 1.9106 -0.9561 26 1 1.5580 1.9983 0.8043 27 1 2.2705 -0.3251 3.2526 28 1 1.9342 1.1165 2.2643 29 1 0.0085 1.9283 5.2178 30 1 3.8388 -1.2631 2.0819 31 1 3.9739 -0.0297 0.8057 32 1 5.9575 -1.8332 0.3025 33 1 5.4205 -3.4293 -0.4492 34 1 4.5698 -0.5646 -1.4005 35 1 4.0325 -2.1609 -2.1518 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691598110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = 60.144376 kcal Electronic energy + Delta-G solvation = -15626.816960 eV Core-core repulsion = 13240.197429 eV Total energy + Delta-G solvation = -2386.619532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.04589 -36.81697 -35.08248 -32.55010 -30.91811 -27.97260 -26.41241 -25.06312 -22.73199 -22.53695 -22.02804 -18.85522 -16.97008 -16.18906 -15.03073 -14.95547 -14.67817 -14.18125 -13.76949 -13.21899 -12.92956 -12.61594 -12.31984 -12.21673 -11.88014 -11.61313 -11.39402 -11.31775 -11.16092 -10.87301 -10.81449 -10.65067 -10.43665 -10.29104 -10.14023 -9.77136 -9.33267 -9.02918 -8.36054 -7.23132 -5.99460 -3.95936 2.90381 3.26466 3.33976 3.40386 3.44383 4.04572 4.12909 4.39926 4.54971 4.88217 5.07424 5.27671 5.35102 5.52174 5.69085 5.73545 5.80735 5.85004 5.92570 5.99906 6.08407 6.17731 6.33970 6.55768 6.62030 6.76645 6.99465 7.22248 7.43170 7.48604 7.87462 8.07818 8.15020 8.20881 8.57530 9.09428 9.64294 11.11034 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.034012 B = 0.008217 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.052090 B = 3406.894162 C = 3540.652030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.092 3.908 3 C -0.182 4.182 4 N -0.532 5.532 5 C 0.186 3.814 6 C -0.498 4.498 7 H 0.071 0.929 8 C 0.053 3.947 9 N -0.901 5.901 10 Si 0.891 3.109 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.091 3.909 15 C -0.035 4.035 16 C 0.265 3.735 17 N -0.441 5.441 18 C -0.151 4.151 19 C -0.153 4.153 20 H 0.090 0.910 21 H 0.027 0.973 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.011 0.989 29 H 0.259 0.741 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -1.464 -9.851 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.017 4.017 3 C -0.240 4.240 4 N -0.256 5.256 5 C 0.062 3.938 6 C -0.536 4.536 7 H 0.089 0.911 8 C -0.148 4.148 9 N -0.541 5.541 10 Si 0.719 3.281 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.039 4.039 15 C -0.039 4.039 16 C -0.052 4.052 17 N -0.116 5.116 18 C -0.189 4.189 19 C -0.192 4.192 20 H 0.109 0.891 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.715 -3.091 -9.672 12.752 hybrid contribution -0.346 1.098 0.368 1.208 sum 7.370 -1.993 -9.304 12.035 Atomic orbital electron populations 1.22136 0.94421 1.03075 1.00193 1.21424 0.96397 0.91375 0.92471 1.22444 1.00361 0.99460 1.01758 1.62338 1.09675 1.49421 1.04195 1.19862 0.97016 0.91884 0.85086 1.21371 0.93757 1.24761 1.13758 0.91089 1.24960 0.97911 0.95674 0.96255 1.69949 1.35463 1.28704 1.19969 0.86603 0.85601 0.77263 0.78632 1.20791 1.21433 1.19810 1.21638 0.92160 0.93488 0.96599 1.18548 0.90661 0.93815 1.00903 1.27284 0.92905 0.92285 0.92738 1.81126 1.09243 1.12451 1.08766 1.23142 0.91694 1.01905 1.02200 1.23230 1.01929 1.01880 0.92144 0.89098 0.95406 0.92854 0.92472 0.93648 0.93616 0.90850 0.96001 0.97111 0.93099 0.90137 0.93449 0.87079 0.88172 0.87219 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.72 37.16 0.29 -2.54 16 2 C 0.09 1.70 2.80 -67.71 -0.19 1.51 16 3 C -0.18 -3.09 8.31 37.16 0.31 -2.78 16 4 N -0.53 -10.77 3.71 -228.09 -0.85 -11.61 16 5 C 0.19 4.56 4.49 -4.98 -0.02 4.53 16 6 C -0.50 -13.47 6.63 -34.44 -0.23 -13.69 16 7 H 0.07 1.95 5.66 -52.48 -0.30 1.65 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.09 1.45 4.96 -3.83 -0.02 1.43 16 15 C -0.04 -0.47 1.53 -157.25 -0.24 -0.72 16 16 C 0.27 4.58 14.38 -20.76 -0.30 4.28 16 17 N -0.44 -8.73 18.54 42.15 0.78 -7.94 16 18 C -0.15 -1.42 9.93 -26.73 -0.27 -1.69 16 19 C -0.15 -1.53 9.31 -26.69 -0.25 -1.78 16 20 H 0.09 2.06 5.72 -51.93 -0.30 1.77 16 21 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 23 H 0.06 0.96 6.77 -51.93 -0.35 0.61 16 24 H 0.04 0.70 6.30 -51.93 -0.33 0.37 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.47 6.45 -51.93 -0.33 1.14 16 27 H 0.02 0.58 7.68 -51.93 -0.40 0.18 16 28 H 0.01 0.28 5.62 -51.93 -0.29 -0.01 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 31 H 0.05 0.68 6.00 -51.93 -0.31 0.37 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 284.29 15.07 4.28 4.28 Total: -1.00 -30.28 284.29 -6.14 -36.42 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.06 Total: -2.36 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.01 Total: -10.09 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.67 Total: -44.94 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.28 -6.14 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691598110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.563 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds