Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00190 * 2 1 4 4 C 1.53005 * 109.47144 * 65.27415 * 3 2 1 5 5 C 1.50703 * 115.54550 * 54.78954 * 4 3 2 6 6 H 1.08004 * 119.99657 * 215.50749 * 5 4 3 7 7 C 1.37872 * 120.00453 * 35.23555 * 5 4 3 8 8 N 1.31513 * 119.99677 * 15.58884 * 7 5 4 9 9 Si 1.86798 * 120.00325 * 195.58913 * 7 5 4 10 10 H 1.48499 * 109.47016 * 60.00082 * 9 7 5 11 11 H 1.48506 * 109.46965 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47307 * 299.99911 * 9 7 5 13 13 C 1.52987 * 117.50031 * 200.46241 * 4 3 2 14 14 C 1.53000 * 117.49892 * 269.12272 * 4 3 2 15 15 C 1.46899 * 110.99747 * 236.04571 * 2 1 3 16 16 C 1.53003 * 109.47058 * 63.95425 * 15 2 1 17 17 C 1.53001 * 109.47195 * 183.95462 * 15 2 1 18 18 C 1.47198 * 109.47585 * 303.95517 * 15 2 1 19 19 N 3.39320 * 82.47708 * 198.72445 * 2 1 3 20 20 H 1.08994 * 109.47349 * 54.15679 * 1 2 3 21 21 H 1.09000 * 109.47297 * 174.16078 * 1 2 3 22 22 H 1.09002 * 109.47041 * 294.15810 * 1 2 3 23 23 H 1.09004 * 109.47094 * 305.27782 * 3 2 1 24 24 H 1.08997 * 109.47270 * 185.27480 * 3 2 1 25 25 H 0.97000 * 120.00492 * 183.95102 * 8 7 5 26 26 H 1.09003 * 117.50149 * 215.00608 * 13 4 3 27 27 H 1.09004 * 117.50215 * 0.02562 * 13 4 3 28 28 H 1.08997 * 117.50101 * 359.97435 * 14 4 3 29 29 H 1.09004 * 117.49990 * 144.97110 * 14 4 3 30 30 H 1.09002 * 109.47004 * 59.99881 * 16 15 2 31 31 H 1.08997 * 109.47077 * 179.97438 * 16 15 2 32 32 H 1.08993 * 109.47317 * 299.99913 * 16 15 2 33 33 H 1.09003 * 109.47291 * 59.99878 * 17 15 2 34 34 H 1.08997 * 109.47575 * 180.02562 * 17 15 2 35 35 H 1.09002 * 109.47017 * 300.00211 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6150 2.0638 1.3103 5 6 2.0285 1.3454 2.5689 6 1 1.3935 1.3768 3.4420 7 6 3.2145 0.6433 2.6040 8 7 4.1236 0.8413 1.6745 9 14 3.5303 -0.5891 3.9718 10 1 2.4885 -1.6466 3.9355 11 1 4.8680 -1.2060 3.7831 12 1 3.4855 0.1052 5.2837 13 6 1.6321 3.5934 1.3319 14 6 0.2983 2.8425 1.3414 15 6 1.9954 -0.7660 -1.1376 16 6 1.5868 -0.0837 -2.4447 17 6 3.5217 -0.8265 -1.0493 18 6 1.4476 -2.1319 -1.1051 19 7 1.0248 -3.1860 -1.0799 20 1 -0.3634 0.6017 -0.8330 21 1 -0.3634 -1.0223 -0.1046 22 1 -0.3633 0.4206 0.9377 23 1 1.5716 1.9233 -0.8390 24 1 3.0810 1.3439 -0.0945 25 1 4.9331 0.3070 1.6661 26 1 1.9425 4.0803 2.2564 27 1 1.9141 4.1067 0.4125 28 1 -0.2966 2.8619 0.4283 29 1 -0.2690 2.8349 2.2721 30 1 1.9925 0.9278 -2.4688 31 1 1.9778 -0.6518 -3.2887 32 1 0.4995 -0.0406 -2.5076 33 1 3.8128 -1.3125 -0.1181 34 1 3.9123 -1.3944 -1.8936 35 1 3.9273 0.1850 -1.0734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693956576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = 67.000160 kcal Electronic energy + Delta-G solvation = -16140.194896 eV Core-core repulsion = 13753.872653 eV Total energy + Delta-G solvation = -2386.322243 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94552 -36.46022 -34.95175 -32.03839 -31.23861 -27.45487 -26.47629 -25.33225 -23.98214 -21.33811 -21.11821 -18.77413 -16.69531 -15.91272 -15.25607 -14.67326 -14.23819 -13.85696 -13.59658 -13.26220 -13.05280 -12.58684 -12.27548 -12.00438 -11.74631 -11.58943 -11.43717 -11.13106 -11.01216 -10.85147 -10.76964 -10.68878 -10.42392 -10.41241 -9.94756 -9.27949 -9.07504 -8.58012 -7.92199 -7.40922 -5.97185 -3.91190 3.07992 3.16976 3.38868 3.43339 3.51214 4.26241 4.51659 4.67873 5.12816 5.23093 5.33613 5.63182 5.77570 5.82996 5.95525 6.05734 6.10377 6.18016 6.20445 6.33837 6.41246 6.54179 6.62958 6.67749 6.73222 6.87052 6.94927 7.11270 7.34040 7.51785 7.86029 7.91353 8.01362 8.08252 8.53044 9.00301 9.68021 11.09047 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.013980 C = 0.010555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.263453 B = 2002.336176 C = 2652.101870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.490 5.490 3 C 0.097 3.903 4 C 0.068 3.932 5 C -0.476 4.476 6 H 0.053 0.947 7 C 0.095 3.905 8 N -0.872 5.872 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.282 1.282 13 C -0.204 4.204 14 C -0.218 4.218 15 C 0.200 3.800 16 C -0.178 4.178 17 C -0.129 4.129 18 C 0.239 3.761 19 N -0.454 5.454 20 H 0.017 0.983 21 H 0.045 0.955 22 H 0.084 0.916 23 H -0.002 1.002 24 H 0.125 0.875 25 H 0.258 0.742 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 0.943 -6.939 7.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.214 5.214 3 C -0.029 4.029 4 C 0.067 3.933 5 C -0.512 4.512 6 H 0.071 0.929 7 C -0.108 4.108 8 N -0.509 5.509 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.208 1.208 13 C -0.243 4.243 14 C -0.256 4.256 15 C 0.107 3.893 16 C -0.238 4.238 17 C -0.187 4.187 18 C -0.079 4.079 19 N -0.130 5.130 20 H 0.035 0.965 21 H 0.064 0.936 22 H 0.103 0.897 23 H 0.016 0.984 24 H 0.142 0.858 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.063 -0.919 -6.487 6.869 hybrid contribution -0.151 0.127 0.064 0.207 sum -2.214 -0.793 -6.423 6.840 Atomic orbital electron populations 1.22468 0.88735 0.99618 1.01629 1.62081 1.06437 1.16269 1.36578 1.21933 1.03333 0.83808 0.93864 1.18871 0.92041 0.87708 0.94690 1.20209 1.04131 1.31096 0.95811 0.92902 1.24605 0.94966 0.95706 0.95547 1.69863 1.07742 1.38264 1.34989 0.86896 0.77167 0.82574 0.82664 1.20285 1.21505 1.20787 1.22979 1.01215 0.99996 1.00068 1.22972 0.91614 1.11174 0.99819 1.18630 0.96369 0.82690 0.91654 1.22494 1.02121 1.02243 0.96930 1.21847 0.90313 1.04457 1.02091 1.29141 0.92252 0.94640 0.91894 1.81087 1.09812 1.12794 1.09272 0.96487 0.93596 0.89737 0.98382 0.85753 0.93150 0.90439 0.91977 0.91825 0.90885 0.90157 0.91949 0.92148 0.90732 0.93186 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.22 60.07 0.49 0.93 16 2 N -0.49 -9.61 4.18 -230.43 -0.96 -10.57 16 3 C 0.10 1.97 3.25 -3.82 -0.01 1.96 16 4 C 0.07 1.53 1.35 -155.66 -0.21 1.32 16 5 C -0.48 -12.20 8.72 -34.44 -0.30 -12.50 16 6 H 0.05 1.40 7.86 -52.48 -0.41 0.99 16 7 C 0.10 2.42 5.11 -17.82 -0.09 2.33 16 8 N -0.87 -21.69 10.98 55.43 0.61 -21.08 16 9 Si 0.88 20.78 29.57 -169.99 -5.03 15.76 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C -0.20 -4.34 9.96 -26.70 -0.27 -4.61 16 14 C -0.22 -4.44 8.42 -26.70 -0.22 -4.66 16 15 C 0.20 3.38 0.64 -134.39 -0.09 3.29 16 16 C -0.18 -2.44 7.75 37.16 0.29 -2.15 16 17 C -0.13 -2.12 8.22 37.16 0.31 -1.81 16 18 C 0.24 4.36 12.30 -20.76 -0.26 4.11 16 19 N -0.45 -8.91 18.54 42.15 0.78 -8.13 16 20 H 0.02 0.28 6.86 -51.93 -0.36 -0.08 16 21 H 0.05 0.82 6.64 -51.93 -0.34 0.48 16 22 H 0.08 1.65 6.55 -51.93 -0.34 1.31 16 23 H 0.00 -0.03 6.72 -51.93 -0.35 -0.38 16 24 H 0.12 2.71 3.79 -51.93 -0.20 2.52 16 25 H 0.26 6.26 8.32 -40.82 -0.34 5.92 16 26 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.07 6.62 -51.93 -0.34 0.72 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 6.72 -51.93 -0.35 0.46 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.50 6.21 -51.93 -0.32 1.18 16 LS Contribution 281.79 15.07 4.25 4.25 Total: -1.00 -26.22 281.79 -5.82 -32.05 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.11 Total: -0.47 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.36 Total: -11.80 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.43 Total: -39.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.22 -5.82 -32.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693956576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.046 kcal (2) G-P(sol) polarization free energy of solvation -26.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds