Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00190 * 2 1 4 4 C 1.53005 * 109.47144 * 65.27415 * 3 2 1 5 5 C 1.50703 * 115.54550 * 54.78954 * 4 3 2 6 6 H 1.08004 * 119.99657 * 215.50749 * 5 4 3 7 7 C 1.37872 * 120.00453 * 35.23555 * 5 4 3 8 8 N 1.31513 * 119.99677 * 15.58884 * 7 5 4 9 9 Si 1.86798 * 120.00325 * 195.58913 * 7 5 4 10 10 H 1.48499 * 109.47016 * 60.00082 * 9 7 5 11 11 H 1.48506 * 109.46965 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47307 * 299.99911 * 9 7 5 13 13 C 1.52987 * 117.50031 * 200.46241 * 4 3 2 14 14 C 1.53000 * 117.49892 * 269.12272 * 4 3 2 15 15 C 1.46899 * 110.99747 * 236.04571 * 2 1 3 16 16 C 1.53003 * 109.47058 * 63.95425 * 15 2 1 17 17 C 1.53001 * 109.47195 * 183.95462 * 15 2 1 18 18 C 1.47198 * 109.47585 * 303.95517 * 15 2 1 19 19 N 3.39320 * 82.47708 * 198.72445 * 2 1 3 20 20 H 1.08994 * 109.47349 * 54.15679 * 1 2 3 21 21 H 1.09000 * 109.47297 * 174.16078 * 1 2 3 22 22 H 1.09002 * 109.47041 * 294.15810 * 1 2 3 23 23 H 1.09004 * 109.47094 * 305.27782 * 3 2 1 24 24 H 1.08997 * 109.47270 * 185.27480 * 3 2 1 25 25 H 0.97000 * 120.00492 * 183.95102 * 8 7 5 26 26 H 1.09003 * 117.50149 * 215.00608 * 13 4 3 27 27 H 1.09004 * 117.50215 * 0.02562 * 13 4 3 28 28 H 1.08997 * 117.50101 * 359.97435 * 14 4 3 29 29 H 1.09004 * 117.49990 * 144.97110 * 14 4 3 30 30 H 1.09002 * 109.47004 * 59.99881 * 16 15 2 31 31 H 1.08997 * 109.47077 * 179.97438 * 16 15 2 32 32 H 1.08993 * 109.47317 * 299.99913 * 16 15 2 33 33 H 1.09003 * 109.47291 * 59.99878 * 17 15 2 34 34 H 1.08997 * 109.47575 * 180.02562 * 17 15 2 35 35 H 1.09002 * 109.47017 * 300.00211 * 17 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6150 2.0638 1.3103 5 6 2.0285 1.3454 2.5689 6 1 1.3935 1.3768 3.4420 7 6 3.2145 0.6433 2.6040 8 7 4.1236 0.8413 1.6745 9 14 3.5303 -0.5891 3.9718 10 1 2.4885 -1.6466 3.9355 11 1 4.8680 -1.2060 3.7831 12 1 3.4855 0.1052 5.2837 13 6 1.6321 3.5934 1.3319 14 6 0.2983 2.8425 1.3414 15 6 1.9954 -0.7660 -1.1376 16 6 1.5868 -0.0837 -2.4447 17 6 3.5217 -0.8265 -1.0493 18 6 1.4476 -2.1319 -1.1051 19 7 1.0248 -3.1860 -1.0799 20 1 -0.3634 0.6017 -0.8330 21 1 -0.3634 -1.0223 -0.1046 22 1 -0.3633 0.4206 0.9377 23 1 1.5716 1.9233 -0.8390 24 1 3.0810 1.3439 -0.0945 25 1 4.9331 0.3070 1.6661 26 1 1.9425 4.0803 2.2564 27 1 1.9141 4.1067 0.4125 28 1 -0.2966 2.8619 0.4283 29 1 -0.2690 2.8349 2.2721 30 1 1.9925 0.9278 -2.4688 31 1 1.9778 -0.6518 -3.2887 32 1 0.4995 -0.0406 -2.5076 33 1 3.8128 -1.3125 -0.1181 34 1 3.9123 -1.3944 -1.8936 35 1 3.9273 0.1850 -1.0734 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693956576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = 52.515976 kcal Electronic energy + Delta-G solvation = -16140.822977 eV Core-core repulsion = 13753.872653 eV Total energy + Delta-G solvation = -2386.950324 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38261 -38.06326 -36.45986 -33.95305 -32.61771 -28.81977 -27.85115 -27.19648 -25.37493 -22.85281 -22.74278 -20.52047 -18.15594 -17.65912 -16.62632 -16.52969 -15.75241 -15.46132 -15.09092 -14.59620 -14.54731 -14.18226 -13.80922 -13.37632 -13.26174 -13.02615 -12.82939 -12.80043 -12.69899 -12.44695 -12.28885 -12.19550 -12.03270 -12.00133 -11.64315 -11.00854 -10.90501 -10.31389 -9.73642 -8.83228 -7.89923 -5.86537 1.45796 1.50119 1.56565 1.63779 1.74684 2.57651 2.88245 3.18105 3.38321 3.86784 4.01338 4.11077 4.41681 4.51391 4.56951 4.73299 4.77236 4.80188 4.90612 4.94788 4.98540 5.05992 5.07334 5.19200 5.27218 5.30650 5.50028 5.51672 5.67775 5.80183 6.14195 6.40759 6.44600 6.59394 6.70627 7.07284 7.71811 9.13426 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.013980 C = 0.010555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.263453 B = 2002.336176 C = 2652.101870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.517 5.517 3 C 0.110 3.890 4 C 0.042 3.958 5 C -0.494 4.494 6 H 0.030 0.970 7 C 0.072 3.928 8 N -0.871 5.871 9 Si 0.911 3.089 10 H -0.291 1.291 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.204 4.204 14 C -0.199 4.199 15 C 0.199 3.801 16 C -0.170 4.170 17 C -0.123 4.123 18 C 0.251 3.749 19 N -0.482 5.482 20 H 0.040 0.960 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.019 0.981 24 H 0.110 0.890 25 H 0.259 0.741 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 1.409 -8.671 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.241 5.241 3 C -0.016 4.016 4 C 0.041 3.959 5 C -0.531 4.531 6 H 0.049 0.951 7 C -0.131 4.131 8 N -0.508 5.508 9 Si 0.740 3.260 10 H -0.218 1.218 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.242 4.242 14 C -0.236 4.236 15 C 0.106 3.894 16 C -0.230 4.230 17 C -0.181 4.181 18 C -0.067 4.067 19 N -0.159 5.159 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.128 0.872 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.223 -0.448 -8.220 8.527 hybrid contribution -0.106 -0.019 0.649 0.658 sum -2.330 -0.467 -7.570 7.934 Atomic orbital electron populations 1.22360 0.88138 0.99702 1.01565 1.61924 1.07197 1.16198 1.38820 1.21678 1.02501 0.84268 0.93171 1.18978 0.94012 0.88296 0.94630 1.20339 1.04018 1.32154 0.96598 0.95126 1.24878 0.95167 0.96448 0.96565 1.69894 1.07613 1.38247 1.35040 0.86412 0.76656 0.81260 0.81686 1.21806 1.21015 1.21067 1.22963 1.01873 0.99094 1.00306 1.22933 0.91022 1.09112 1.00552 1.18792 0.96271 0.81750 0.92599 1.22442 1.02574 1.02499 0.95489 1.21795 0.90212 1.04371 1.01772 1.29451 0.91510 0.94730 0.90985 1.81097 1.10807 1.13718 1.10280 0.94140 0.93905 0.91592 0.96312 0.87225 0.93099 0.91902 0.90061 0.89435 0.91664 0.89384 0.89663 0.91649 0.93731 0.90261 0.89549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 8.22 127.69 1.05 2.11 16 2 N -0.52 -19.43 4.18 -882.94 -3.69 -23.12 16 3 C 0.11 4.27 3.25 86.31 0.28 4.55 16 4 C 0.04 1.83 1.35 -52.93 -0.07 1.76 16 5 C -0.49 -25.43 8.72 25.60 0.22 -25.20 16 6 H 0.03 1.66 7.86 -2.91 -0.02 1.64 16 7 C 0.07 3.67 5.11 84.65 0.43 4.11 16 8 N -0.87 -42.93 10.98 21.45 0.24 -42.69 16 9 Si 0.91 42.84 29.57 68.60 2.03 44.87 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 C -0.20 -8.35 9.96 30.61 0.30 -8.04 16 14 C -0.20 -7.71 8.42 30.62 0.26 -7.46 16 15 C 0.20 6.27 0.64 1.72 0.00 6.27 16 16 C -0.17 -4.03 7.75 71.98 0.56 -3.47 16 17 C -0.12 -3.83 8.22 71.98 0.59 -3.24 16 18 C 0.25 8.74 12.30 89.44 1.10 9.84 16 19 N -0.48 -18.40 18.54 20.01 0.37 -18.03 16 20 H 0.04 1.19 6.86 -2.39 -0.02 1.18 16 21 H 0.04 1.48 6.64 -2.39 -0.02 1.46 16 22 H 0.07 2.51 6.55 -2.39 -0.02 2.49 16 23 H 0.02 0.65 6.72 -2.38 -0.02 0.63 16 24 H 0.11 4.60 3.79 -2.39 -0.01 4.59 16 25 H 0.26 12.43 8.32 -92.71 -0.77 11.66 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 30 H 0.09 1.98 6.62 -2.39 -0.02 1.96 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.50 6.72 -2.39 -0.02 1.48 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.09 2.75 6.21 -2.39 -0.01 2.73 16 Total: -1.00 -54.91 281.79 4.74 -50.17 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.07 Total: 7.57 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 4.73 Total: -18.77 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.09 Total: -83.84 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -54.91 4.74 -50.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693956576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.689 kcal (2) G-P(sol) polarization free energy of solvation -54.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds