Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00178 * 2 1 4 4 C 1.53007 * 109.46916 * 66.04467 * 3 2 1 5 5 C 1.52996 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46736 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47000 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00490 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00128 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99593 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47141 * 89.99878 * 11 9 7 13 13 H 1.48494 * 109.47507 * 210.00311 * 11 9 7 14 14 H 1.48499 * 109.47178 * 330.00364 * 11 9 7 15 15 C 1.46902 * 111.00070 * 236.04642 * 2 1 3 16 16 C 1.47205 * 115.55783 * 89.64100 * 15 2 1 17 17 N 3.50231 * 105.16154 * 280.15433 * 2 1 3 18 18 C 1.53000 * 117.50126 * 303.95557 * 15 2 1 19 19 C 1.52997 * 117.50071 * 235.32789 * 15 2 1 20 20 H 1.09002 * 109.46756 * 183.95079 * 1 2 3 21 21 H 1.08999 * 109.47256 * 303.95271 * 1 2 3 22 22 H 1.08999 * 109.47108 * 63.95117 * 1 2 3 23 23 H 1.08992 * 109.47733 * 186.04548 * 3 2 1 24 24 H 1.09003 * 109.47157 * 306.04747 * 3 2 1 25 25 H 1.08994 * 109.47194 * 300.00040 * 4 3 2 26 26 H 1.08997 * 109.46597 * 60.00347 * 4 3 2 27 27 H 1.09001 * 109.47770 * 299.99706 * 5 4 3 28 28 H 1.08997 * 109.47469 * 60.00667 * 5 4 3 29 29 H 1.08994 * 109.47194 * 299.99827 * 6 5 4 30 30 H 1.09003 * 109.46979 * 59.99957 * 6 5 4 31 31 H 0.97003 * 119.99530 * 179.97438 * 10 9 7 32 32 H 1.08990 * 117.49990 * 145.01711 * 18 15 2 33 33 H 1.09004 * 117.49237 * 359.97438 * 18 15 2 34 34 H 1.08999 * 117.49685 * 0.02562 * 19 15 2 35 35 H 1.08999 * 117.52022 * 214.96909 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3180 6 6 1.8157 4.1718 2.6366 7 6 2.3558 5.5787 2.6366 8 1 2.9039 5.9468 1.7819 9 6 2.1512 6.3957 3.7283 10 7 1.4851 5.9469 4.7698 11 14 2.8213 8.1393 3.7287 12 1 1.8042 9.0606 3.1611 13 1 3.1373 8.5479 5.1209 14 1 4.0550 8.1957 2.9041 15 6 1.9955 -0.7660 -1.1376 16 6 2.2153 0.0028 -2.3736 17 7 2.3850 0.5960 -3.3275 18 6 1.5410 -2.2198 -1.2813 19 6 2.9694 -1.9056 -0.8318 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3634 0.5739 0.8524 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 0.5472 2.0845 1.4265 26 1 2.0658 1.5015 2.1491 27 1 3.2635 3.4594 1.2096 28 1 1.7445 4.0417 0.4872 29 1 0.7316 4.1984 2.7455 30 1 2.2508 3.6159 3.4672 31 1 1.3415 6.5216 5.5379 32 1 1.4048 -2.6071 -2.2910 33 1 0.8517 -2.6080 -0.5315 34 1 3.2192 -2.0873 0.2135 35 1 3.7729 -2.0866 -1.5457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693978875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = 42.657306 kcal Electronic energy + Delta-G solvation = -14505.565502 eV Core-core repulsion = 12118.187674 eV Total energy + Delta-G solvation = -2387.377828 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53824 -36.19024 -35.55930 -33.76139 -31.93991 -28.60045 -26.70944 -24.56887 -22.98197 -22.59715 -21.21040 -20.02665 -17.73679 -16.27046 -15.88805 -15.32584 -14.75081 -14.48168 -14.36868 -13.81225 -13.38777 -13.05931 -13.02503 -12.52670 -12.23673 -12.03214 -11.71096 -11.65548 -11.53084 -11.00217 -10.92386 -10.60755 -10.51895 -10.41474 -10.32725 -9.61737 -9.26607 -9.00884 -8.67424 -8.31513 -5.96930 -3.98898 2.31773 2.49164 3.33892 3.39892 3.42185 3.44051 3.58293 3.62333 4.48746 4.52179 4.70245 4.93078 5.20447 5.24497 5.29708 5.38828 5.46444 5.50431 5.59107 5.78750 5.81637 5.87834 6.09226 6.17563 6.47028 6.74271 6.83071 6.88611 6.96662 7.19438 7.33392 7.71758 7.87141 8.04002 8.47144 9.08430 9.64985 11.14420 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.004534 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.607190 B = 6174.732266 C = 6451.775625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.485 5.485 3 C 0.051 3.949 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.103 3.897 16 C 0.219 3.781 17 N -0.423 5.423 18 C -0.143 4.143 19 C -0.127 4.127 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.027 0.973 23 H 0.076 0.924 24 H 0.034 0.966 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -17.378 -9.190 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.207 5.207 3 C -0.076 4.076 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.008 3.992 16 C -0.101 4.101 17 N -0.099 5.099 18 C -0.182 4.182 19 C -0.166 4.166 20 H 0.091 0.909 21 H 0.103 0.897 22 H 0.046 0.954 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.454 -16.629 -10.012 19.415 hybrid contribution -0.040 1.366 -0.323 1.405 sum -0.494 -15.262 -10.335 18.439 Atomic orbital electron populations 1.22589 0.86517 1.02617 1.01652 1.62372 1.08572 1.15501 1.34271 1.22386 1.00219 0.85867 0.99094 1.21678 1.01042 0.97013 0.95222 1.21612 0.99476 0.92778 1.00990 1.19083 0.96706 0.94672 0.91033 1.21290 1.34781 0.98028 1.01765 0.92807 1.25023 0.95362 0.98449 0.95628 1.69971 1.41178 1.36387 1.06033 0.86615 0.79363 0.84982 0.77174 1.20712 1.21206 1.19905 1.18570 1.08591 0.88332 0.83711 1.28770 0.93355 0.94062 0.93868 1.81230 1.08778 1.08277 1.11604 1.23287 0.99013 0.92071 1.03815 1.23290 0.92852 0.96114 1.04321 0.90908 0.89659 0.95390 0.90566 0.94780 0.92266 0.91254 0.93372 0.93713 0.96710 0.96500 0.93056 0.87899 0.86381 0.86048 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.19 60.06 0.55 0.70 16 2 N -0.48 -5.67 4.90 -230.43 -1.13 -6.80 16 3 C 0.05 0.74 4.04 -3.82 -0.02 0.72 16 4 C -0.11 -1.87 5.15 -26.73 -0.14 -2.01 16 5 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.10 1.03 1.90 -134.39 -0.25 0.77 16 16 C 0.22 2.80 13.52 -20.76 -0.28 2.52 16 17 N -0.42 -6.45 18.54 42.16 0.78 -5.67 16 18 C -0.14 -0.94 9.45 -26.73 -0.25 -1.19 16 19 C -0.13 -0.92 10.14 -26.73 -0.27 -1.19 16 20 H 0.07 0.58 6.90 -51.93 -0.36 0.22 16 21 H 0.08 0.94 6.30 -51.93 -0.33 0.62 16 22 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 24 H 0.03 0.53 7.55 -51.93 -0.39 0.14 16 25 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.12 0.64 7.27 -51.93 -0.38 0.26 16 34 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 297.54 15.07 4.48 4.48 Total: -1.00 -31.94 297.54 -7.05 -38.99 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -5.56 Total: -5.98 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.35 Total: -15.49 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.39 Total: -38.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.94 -7.05 -38.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693978875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.652 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds