Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00178 * 2 1 4 4 C 1.53007 * 109.46916 * 66.04467 * 3 2 1 5 5 C 1.52996 * 109.46736 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46736 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47000 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00490 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00128 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99593 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47141 * 89.99878 * 11 9 7 13 13 H 1.48494 * 109.47507 * 210.00311 * 11 9 7 14 14 H 1.48499 * 109.47178 * 330.00364 * 11 9 7 15 15 C 1.46902 * 111.00070 * 236.04642 * 2 1 3 16 16 C 1.47205 * 115.55783 * 89.64100 * 15 2 1 17 17 N 3.50231 * 105.16154 * 280.15433 * 2 1 3 18 18 C 1.53000 * 117.50126 * 303.95557 * 15 2 1 19 19 C 1.52997 * 117.50071 * 235.32789 * 15 2 1 20 20 H 1.09002 * 109.46756 * 183.95079 * 1 2 3 21 21 H 1.08999 * 109.47256 * 303.95271 * 1 2 3 22 22 H 1.08999 * 109.47108 * 63.95117 * 1 2 3 23 23 H 1.08992 * 109.47733 * 186.04548 * 3 2 1 24 24 H 1.09003 * 109.47157 * 306.04747 * 3 2 1 25 25 H 1.08994 * 109.47194 * 300.00040 * 4 3 2 26 26 H 1.08997 * 109.46597 * 60.00347 * 4 3 2 27 27 H 1.09001 * 109.47770 * 299.99706 * 5 4 3 28 28 H 1.08997 * 109.47469 * 60.00667 * 5 4 3 29 29 H 1.08994 * 109.47194 * 299.99827 * 6 5 4 30 30 H 1.09003 * 109.46979 * 59.99957 * 6 5 4 31 31 H 0.97003 * 119.99530 * 179.97438 * 10 9 7 32 32 H 1.08990 * 117.49990 * 145.01711 * 18 15 2 33 33 H 1.09004 * 117.49237 * 359.97438 * 18 15 2 34 34 H 1.08999 * 117.49685 * 0.02562 * 19 15 2 35 35 H 1.08999 * 117.52022 * 214.96909 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1792 3.4860 1.3180 6 6 1.8157 4.1718 2.6366 7 6 2.3558 5.5787 2.6366 8 1 2.9039 5.9468 1.7819 9 6 2.1512 6.3957 3.7283 10 7 1.4851 5.9469 4.7698 11 14 2.8213 8.1393 3.7287 12 1 1.8042 9.0606 3.1611 13 1 3.1373 8.5479 5.1209 14 1 4.0550 8.1957 2.9041 15 6 1.9955 -0.7660 -1.1376 16 6 2.2153 0.0028 -2.3736 17 7 2.3850 0.5960 -3.3275 18 6 1.5410 -2.2198 -1.2813 19 6 2.9694 -1.9056 -0.8318 20 1 -0.3633 -1.0253 0.0708 21 1 -0.3634 0.5739 0.8524 22 1 -0.3633 0.4513 -0.9233 23 1 3.0797 1.3445 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 0.5472 2.0845 1.4265 26 1 2.0658 1.5015 2.1491 27 1 3.2635 3.4594 1.2096 28 1 1.7445 4.0417 0.4872 29 1 0.7316 4.1984 2.7455 30 1 2.2508 3.6159 3.4672 31 1 1.3415 6.5216 5.5379 32 1 1.4048 -2.6071 -2.2910 33 1 0.8517 -2.6080 -0.5315 34 1 3.2192 -2.0873 0.2135 35 1 3.7729 -2.0866 -1.5457 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693978875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = 22.435035 kcal Electronic energy + Delta-G solvation = -14506.442406 eV Core-core repulsion = 12118.187674 eV Total energy + Delta-G solvation = -2388.254731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37002 -37.37802 -36.68498 -35.40593 -33.72102 -30.23080 -27.82186 -26.18833 -24.05928 -23.18317 -22.69019 -21.66671 -18.60953 -18.43793 -16.72036 -16.59650 -16.53025 -15.74335 -15.37891 -14.85889 -14.58233 -14.47341 -14.02603 -13.91229 -13.65584 -13.58277 -13.16216 -12.84531 -12.71386 -12.36600 -12.26777 -12.16965 -12.04764 -11.67524 -11.36108 -11.29423 -11.20253 -10.97472 -10.55365 -9.61630 -8.20435 -6.31457 1.38837 1.40071 1.44439 1.51286 1.51911 2.40146 2.60967 2.70720 2.92233 3.12301 3.86192 3.93657 4.00103 4.13105 4.34709 4.47237 4.51228 4.62733 4.65528 4.78226 4.82434 4.86744 5.03446 5.12083 5.20194 5.24757 5.32398 5.34514 5.53706 5.76181 5.83890 5.86352 5.94996 6.26103 6.38395 6.85372 7.37615 8.91290 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.050023 B = 0.004534 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.607190 B = 6174.732266 C = 6451.775625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.481 5.481 3 C 0.063 3.937 4 C -0.100 4.100 5 C -0.100 4.100 6 C 0.025 3.975 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.265 1.265 15 C 0.069 3.931 16 C 0.239 3.761 17 N -0.478 5.478 18 C -0.116 4.116 19 C -0.114 4.114 20 H 0.104 0.896 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.041 0.959 29 H -0.008 1.008 30 H -0.004 1.004 31 H 0.264 0.736 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -18.573 -9.502 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.203 5.203 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.012 4.012 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.788 3.212 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.190 1.190 15 C -0.026 4.026 16 C -0.080 4.080 17 N -0.154 5.154 18 C -0.154 4.154 19 C -0.153 4.153 20 H 0.122 0.878 21 H 0.093 0.907 22 H 0.038 0.962 23 H 0.093 0.907 24 H 0.037 0.963 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.010 0.990 30 H 0.014 0.986 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.158 -17.840 -10.335 20.618 hybrid contribution -0.160 1.676 -0.190 1.695 sum -0.318 -16.163 -10.525 19.291 Atomic orbital electron populations 1.22684 0.85789 1.04392 1.00761 1.62330 1.09252 1.13522 1.35221 1.22090 1.00124 0.87451 0.96771 1.21476 1.00867 0.94577 0.96817 1.21423 0.99669 0.94945 0.97763 1.18994 0.94865 0.94231 0.93078 1.21731 1.35198 0.99510 1.02109 0.92673 1.25958 0.95465 1.03149 0.95104 1.70093 1.42137 1.38208 1.06720 0.85476 0.78957 0.79216 0.77582 1.19824 1.20397 1.18983 1.18928 1.12199 0.89216 0.82212 1.29332 0.91766 0.93072 0.93809 1.81238 1.10942 1.09789 1.13475 1.23497 0.98760 0.87980 1.05187 1.23451 0.93531 0.93124 1.05203 0.87773 0.90687 0.96195 0.90702 0.96273 0.92109 0.91166 0.93228 0.94066 0.98985 0.98604 0.92702 0.86525 0.84495 0.85209 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.19 127.69 1.17 1.38 16 2 N -0.48 -10.41 4.90 -882.94 -4.33 -14.74 16 3 C 0.06 1.79 4.04 86.31 0.35 2.14 16 4 C -0.10 -3.33 5.15 30.60 0.16 -3.17 16 5 C -0.10 -4.23 5.15 30.60 0.16 -4.07 16 6 C 0.03 1.37 4.97 29.85 0.15 1.52 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 11 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 C 0.07 1.23 1.90 1.72 0.00 1.23 16 16 C 0.24 5.89 13.52 89.44 1.21 7.10 16 17 N -0.48 -14.58 18.54 20.01 0.37 -14.21 16 18 C -0.12 -1.08 9.45 30.60 0.29 -0.79 16 19 C -0.11 -1.28 10.14 30.60 0.31 -0.97 16 20 H 0.10 1.31 6.90 -2.39 -0.02 1.29 16 21 H 0.07 1.58 6.30 -2.39 -0.02 1.56 16 22 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.07 2.12 8.07 -2.39 -0.02 2.11 16 24 H 0.02 0.59 7.55 -2.39 -0.02 0.58 16 25 H 0.06 2.01 6.47 -2.39 -0.02 1.99 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.14 0.82 7.27 -2.38 -0.02 0.80 16 34 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.89 297.54 3.90 -65.99 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 1.05 Total: -0.10 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 4.49 Total: -27.01 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.67 Total: -86.02 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.89 3.90 -65.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693978875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.425 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds