Wall clock time and date at job start Mon Mar 30 2020 02:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 C 1.50700 * 109.47340 * 180.02562 * 3 2 1 5 5 N 1.30503 * 125.64576 * 270.00241 * 4 3 2 6 6 C 1.34129 * 109.25413 * 179.97438 * 5 4 3 7 7 C 1.34668 * 108.02266 * 359.97438 * 6 5 4 8 8 N 1.35043 * 125.65346 * 89.99717 * 4 3 2 9 9 C 1.46503 * 126.39568 * 0.26119 * 8 4 3 10 10 H 1.09002 * 109.46945 * 359.71876 * 9 8 4 11 11 C 1.52997 * 109.46719 * 119.71669 * 9 8 4 12 12 C 1.53001 * 109.47107 * 239.71424 * 9 8 4 13 13 C 1.50699 * 109.46888 * 175.00091 * 12 9 8 14 14 H 1.07995 * 119.99946 * 359.97438 * 13 12 9 15 15 C 1.37872 * 120.00112 * 180.02562 * 13 12 9 16 16 N 1.31515 * 120.00344 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99916 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47279 * 89.99857 * 17 15 13 19 19 H 1.48499 * 109.47191 * 209.99905 * 17 15 13 20 20 H 1.48504 * 109.47148 * 330.00160 * 17 15 13 21 21 H 1.08997 * 109.47159 * 60.00349 * 1 2 3 22 22 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47119 * 299.99758 * 1 2 3 24 24 H 1.08996 * 109.47113 * 239.99971 * 2 1 3 25 25 H 1.09001 * 109.47072 * 120.00137 * 2 1 3 26 26 H 1.09001 * 109.47577 * 59.99831 * 3 2 1 27 27 H 1.09001 * 109.47248 * 300.00029 * 3 2 1 28 28 H 1.08001 * 125.99326 * 179.97438 * 6 5 4 29 29 H 1.07999 * 126.59453 * 180.02562 * 7 6 5 30 30 H 1.08997 * 109.47239 * 299.99442 * 11 9 8 31 31 H 1.08993 * 109.47772 * 60.00240 * 11 9 8 32 32 H 1.09005 * 109.47181 * 180.02562 * 11 9 8 33 33 H 1.08994 * 109.47264 * 294.99898 * 12 9 8 34 34 H 1.09006 * 109.46892 * 55.00626 * 12 9 8 35 35 H 0.96998 * 119.99898 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.3079 1.4423 1.0596 6 6 5.5945 1.4419 0.6805 7 6 5.6323 1.4412 -0.6656 8 7 4.3336 1.4426 -1.0983 9 6 3.8815 1.4481 -2.4918 10 1 2.7919 1.4472 -2.5202 11 6 4.4089 2.7009 -3.1940 12 6 4.4115 0.2025 -3.2048 13 6 3.8470 0.1445 -4.6009 14 1 3.1768 0.9183 -4.9449 15 6 4.1851 -0.8971 -5.4385 16 7 3.6920 -0.9481 -6.6567 17 14 5.3437 -2.2361 -4.8431 18 1 4.5575 -3.3264 -4.2121 19 1 6.1065 -2.7791 -5.9957 20 1 6.2881 -1.6672 -3.8483 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 6.4503 1.4420 1.3393 29 1 6.5171 1.4403 -1.2849 30 1 4.0313 3.5883 -2.6861 31 1 5.4985 2.7020 -3.1656 32 1 4.0722 2.7053 -4.2307 33 1 5.4994 0.2475 -3.2545 34 1 4.1094 -0.6879 -2.6534 35 1 3.9303 -1.6807 -7.2460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798662.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:59 Heat of formation + Delta-G solvation = 31.876700 kcal Electronic energy + Delta-G solvation = -15406.138528 eV Core-core repulsion = 13018.293218 eV Total energy + Delta-G solvation = -2387.845310 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70006 -35.74917 -34.86392 -32.66167 -30.30632 -29.78307 -27.71705 -26.17198 -23.80041 -21.67109 -21.62026 -20.09589 -18.77129 -17.29779 -16.09262 -15.03263 -14.98442 -14.31303 -14.04696 -13.72397 -13.47431 -13.14636 -12.94113 -12.63232 -12.25145 -11.95653 -11.70704 -11.38954 -11.25331 -11.12114 -10.98581 -10.55620 -10.51477 -10.32594 -9.97088 -9.59136 -9.37894 -8.96252 -8.71236 -7.92082 -6.22221 -4.23295 2.54203 3.19951 3.28296 3.31384 3.35073 3.53247 4.29904 4.72181 5.07758 5.09671 5.21324 5.26532 5.31852 5.53295 5.62861 5.66531 5.77530 5.86225 5.87760 5.93687 6.07263 6.15359 6.23495 6.35898 6.37198 6.46495 6.61754 6.80267 6.90533 7.08209 7.21691 7.48790 7.75786 8.28702 8.53864 8.78177 9.38385 10.89939 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.023329 B = 0.009120 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.956056 B = 3069.335938 C = 3512.139853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.031 4.031 4 C 0.198 3.802 5 N -0.502 5.502 6 C -0.046 4.046 7 C -0.048 4.048 8 N -0.437 5.437 9 C 0.134 3.866 10 H 0.096 0.904 11 C -0.147 4.147 12 C -0.014 4.014 13 C -0.524 4.524 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.024 0.976 34 H 0.018 0.982 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 4.095 10.329 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.070 4.070 4 C -0.064 4.064 5 N -0.221 5.221 6 C -0.195 4.195 7 C -0.183 4.183 8 N -0.117 5.117 9 C 0.033 3.967 10 H 0.114 0.886 11 C -0.205 4.205 12 C -0.052 4.052 13 C -0.562 4.562 14 H 0.096 0.904 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.191 1.191 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.179 0.821 29 H 0.184 0.816 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.488 4.000 10.791 11.604 hybrid contribution 1.149 -0.857 -0.743 1.615 sum -0.339 3.143 10.048 10.533 Atomic orbital electron populations 1.21748 0.95396 1.01802 1.01715 1.21507 0.95785 0.95695 1.02970 1.19985 0.85231 0.98371 1.03407 1.23115 0.95249 1.06275 0.81805 1.70132 1.02119 1.21173 1.28680 1.22119 0.94678 1.09987 0.92702 1.22592 0.87891 1.11424 0.96385 1.45923 1.06076 1.51416 1.08295 1.21722 1.00199 0.98872 0.75944 0.88578 1.22035 1.01344 0.94954 1.02149 1.19893 0.97100 0.91604 0.96554 1.20867 1.29758 1.10564 0.95049 0.90407 1.24933 0.95590 0.97644 0.94665 1.69883 1.44141 1.32393 1.06843 0.86837 0.81713 0.82501 0.78634 1.20127 1.21102 1.19078 0.92477 0.92603 0.92813 0.91408 0.91559 0.89391 0.90485 0.82061 0.81643 0.93776 0.92586 0.89227 0.95818 0.96406 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.68 5.92 -26.74 -0.16 -1.84 16 3 C -0.03 -0.44 5.36 -27.89 -0.15 -0.59 16 4 C 0.20 3.48 7.16 -155.41 -1.11 2.37 16 5 N -0.50 -9.28 11.25 -10.81 -0.12 -9.40 16 6 C -0.05 -0.78 11.87 -17.81 -0.21 -0.99 16 7 C -0.05 -0.82 10.70 -16.56 -0.18 -1.00 16 8 N -0.44 -7.90 2.61 -106.83 -0.28 -8.18 16 9 C 0.13 2.51 2.94 -67.93 -0.20 2.31 16 10 H 0.10 1.76 6.67 -51.93 -0.35 1.42 16 11 C -0.15 -2.52 9.06 37.16 0.34 -2.18 16 12 C -0.01 -0.30 3.52 -27.88 -0.10 -0.40 16 13 C -0.52 -13.73 8.96 -34.44 -0.31 -14.04 16 14 H 0.08 2.15 7.30 -52.49 -0.38 1.76 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 17 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.03 7.07 -51.93 -0.37 0.67 16 28 H 0.16 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 32 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 33 H 0.02 0.54 7.14 -51.93 -0.37 0.17 16 34 H 0.02 0.42 7.57 -51.93 -0.39 0.02 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 288.98 15.07 4.35 4.35 Total: -1.00 -29.69 288.98 -7.35 -37.05 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.61 Total: 0.97 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -1.81 Total: -15.74 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.37 Total: -42.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.69 -7.35 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798662.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.924 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds