Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47320 * 2 1 4 4 C 1.52995 * 109.47317 * 239.99671 * 2 1 3 5 5 C 1.52996 * 109.47243 * 175.00046 * 4 2 1 6 6 C 1.47202 * 109.47025 * 179.97438 * 5 4 2 7 7 N 4.86669 * 126.63779 * 241.84058 * 2 1 3 8 8 N 1.46904 * 109.46937 * 119.99370 * 2 1 3 9 9 C 1.47440 * 110.99676 * 55.12988 * 8 2 1 10 10 C 1.54317 * 107.23368 * 236.73977 * 9 8 2 11 11 C 1.55144 * 103.01861 * 337.71644 * 10 9 8 12 12 H 1.09000 * 110.99290 * 277.56635 * 11 10 9 13 13 C 1.50699 * 110.99303 * 153.74518 * 11 10 9 14 14 H 1.08002 * 119.99703 * 241.45490 * 13 11 10 15 15 C 1.37875 * 120.00351 * 61.45341 * 13 11 10 16 16 N 1.31515 * 119.99669 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00439 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46765 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46845 * 119.99754 * 17 15 13 20 20 H 1.48493 * 109.47297 * 240.00317 * 17 15 13 21 21 C 1.47842 * 111.00238 * 294.28377 * 8 2 1 22 22 H 1.09005 * 109.46814 * 300.00405 * 1 2 3 23 23 H 1.08997 * 109.46620 * 60.00068 * 1 2 3 24 24 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46992 * 295.00235 * 4 2 1 26 26 H 1.08995 * 109.46994 * 55.00160 * 4 2 1 27 27 H 1.09000 * 109.47281 * 300.00012 * 5 4 2 28 28 H 1.09003 * 109.47226 * 60.00395 * 5 4 2 29 29 H 1.09000 * 109.89463 * 117.33566 * 9 8 2 30 30 H 1.09000 * 109.88994 * 356.14383 * 9 8 2 31 31 H 1.08999 * 110.70846 * 96.09223 * 10 9 8 32 32 H 1.09000 * 110.71111 * 219.33808 * 10 9 8 33 33 H 0.96998 * 120.00060 * 180.02562 * 16 15 13 34 34 H 1.09004 * 110.37187 * 265.19138 * 21 8 2 35 35 H 1.09002 * 110.37256 * 27.42242 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 6 4.0555 -1.3079 -2.5151 7 7 4.4342 -1.8429 -3.4429 8 7 2.0196 -0.6924 1.1996 9 6 1.4538 -2.0506 1.2936 10 6 0.7326 -2.1523 2.6540 11 6 1.4134 -1.0401 3.4945 12 1 2.3541 -1.3916 3.9185 13 6 0.4906 -0.5386 4.5752 14 1 0.1812 0.4961 4.5838 15 6 0.0411 -1.4007 5.5528 16 7 0.4182 -2.6606 5.5424 17 14 -1.1023 -0.7791 6.8927 18 1 -1.3736 0.6656 6.6810 19 1 -2.3798 -1.5346 6.8431 20 1 -0.4630 -0.9739 8.2188 21 6 1.6611 0.0529 2.4250 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7715 -1.2054 26 1 1.6055 -0.2618 -2.1369 27 1 3.8532 0.4369 -1.3573 28 1 3.9995 -1.0729 -0.4258 29 1 2.2531 -2.7899 1.2415 30 1 0.7424 -2.2128 0.4838 31 1 -0.3329 -1.9523 2.5414 32 1 0.8966 -3.1310 3.1051 33 1 0.1018 -3.2673 6.2300 34 1 2.4827 0.7017 2.7286 35 1 0.7564 0.6385 2.2619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695839111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = 16.750715 kcal Electronic energy + Delta-G solvation = -15258.389531 eV Core-core repulsion = 12869.888309 eV Total energy + Delta-G solvation = -2388.501222 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01832 -36.74550 -34.63407 -32.49625 -30.61404 -28.34919 -28.14456 -24.96546 -23.98325 -21.61623 -19.57837 -18.76261 -17.31333 -16.66045 -15.66749 -14.90823 -14.65035 -14.28446 -14.15410 -13.33477 -13.09952 -12.76456 -12.65430 -12.25027 -12.14943 -11.65005 -11.53994 -11.25678 -11.04952 -10.96397 -10.88002 -10.76794 -10.49872 -10.29439 -10.17277 -9.54343 -9.23729 -8.83481 -8.41079 -7.61586 -6.04468 -4.07850 2.79278 2.83552 3.27143 3.35782 3.38815 4.05328 4.39119 4.60944 4.97926 5.15684 5.24068 5.29928 5.52526 5.63650 5.65845 5.78325 5.90593 6.01002 6.06588 6.09992 6.27005 6.30789 6.40133 6.55788 6.67761 6.86375 7.13540 7.18334 7.59794 7.64657 7.68015 7.75803 7.87452 8.00674 8.40557 8.94675 9.56885 11.05021 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.057402 B = 0.005872 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.673415 B = 4767.358855 C = 4940.166611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.076 3.924 3 H 0.080 0.920 4 C -0.105 4.105 5 C -0.023 4.023 6 C 0.213 3.787 7 N -0.458 5.458 8 N -0.527 5.527 9 C 0.031 3.969 10 C -0.116 4.116 11 C 0.049 3.951 12 H 0.035 0.965 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.042 3.958 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.259 0.741 34 H 0.060 0.940 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 4.766 -9.425 10.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.034 4.034 3 H 0.098 0.902 4 C -0.144 4.144 5 C -0.063 4.063 6 C -0.104 4.104 7 N -0.135 5.135 8 N -0.251 5.251 9 C -0.096 4.096 10 C -0.155 4.155 11 C 0.030 3.970 12 H 0.053 0.947 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.084 4.084 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.123 0.877 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.521 3.769 -10.773 11.688 hybrid contribution -1.765 0.458 1.218 2.192 sum 0.756 4.227 -9.555 10.475 Atomic orbital electron populations 1.22495 0.97445 1.02640 1.02035 1.21749 0.92849 0.98074 0.90678 0.90159 1.21608 0.92657 1.02193 0.97938 1.19343 0.96924 1.00123 0.89900 1.29604 0.92903 0.93326 0.94547 1.81188 1.09717 1.10363 1.12274 1.63827 1.56454 1.02770 1.02043 1.22982 0.97235 0.90430 0.98969 1.22665 0.98125 1.02277 0.92399 1.19721 0.96089 0.89971 0.91248 0.94684 1.21085 1.28567 0.95852 1.09797 0.92615 1.24954 0.96289 0.94897 0.97625 1.69970 1.44610 1.03700 1.34326 0.86593 0.80721 0.78984 0.82035 1.19800 1.21131 1.21016 1.23218 0.98045 0.97627 0.89539 0.91518 0.92971 0.92011 0.91009 0.91416 0.87729 0.85963 0.92107 0.93781 0.93521 0.91081 0.93111 0.92170 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 8.63 37.16 0.32 -2.14 16 2 C 0.08 0.95 2.29 -67.71 -0.16 0.79 16 3 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 4 C -0.10 -1.08 4.54 -26.74 -0.12 -1.20 16 5 C -0.02 -0.21 5.59 -29.52 -0.16 -0.38 16 6 C 0.21 2.53 15.43 -20.76 -0.32 2.21 16 7 N -0.46 -6.75 18.54 42.15 0.78 -5.97 16 8 N -0.53 -8.38 4.62 -223.29 -1.03 -9.42 16 9 C 0.03 0.54 5.52 -2.84 -0.02 0.52 16 10 C -0.12 -2.54 5.64 -24.91 -0.14 -2.68 16 11 C 0.05 1.15 2.96 -89.63 -0.27 0.88 16 12 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.51 -13.52 8.55 -34.44 -0.29 -13.81 16 14 H 0.06 1.45 7.79 -52.49 -0.41 1.04 16 15 C 0.06 1.73 5.34 -17.82 -0.10 1.63 16 16 N -0.89 -24.81 12.12 55.43 0.67 -24.14 16 17 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.04 0.81 5.93 -2.30 -0.01 0.80 16 22 H 0.07 1.00 6.28 -51.93 -0.33 0.67 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.86 6.06 -51.93 -0.31 0.55 16 25 H 0.07 0.81 6.69 -51.93 -0.35 0.47 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.12 1.23 7.75 -51.93 -0.40 0.83 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.69 4.79 -51.93 -0.25 0.44 16 31 H 0.05 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.07 1.72 7.54 -51.93 -0.39 1.33 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.80 5.79 -51.93 -0.30 0.50 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -28.38 282.57 -6.86 -35.24 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.25 Total: -2.29 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.27 Total: -13.37 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.42 Total: -39.52 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.38 -6.86 -35.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.991 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds