Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47320 * 2 1 4 4 C 1.52995 * 109.47317 * 239.99671 * 2 1 3 5 5 C 1.52996 * 109.47243 * 175.00046 * 4 2 1 6 6 C 1.47202 * 109.47025 * 179.97438 * 5 4 2 7 7 N 4.86669 * 126.63779 * 241.84058 * 2 1 3 8 8 N 1.46904 * 109.46937 * 119.99370 * 2 1 3 9 9 C 1.47440 * 110.99676 * 55.12988 * 8 2 1 10 10 C 1.54317 * 107.23368 * 236.73977 * 9 8 2 11 11 C 1.55144 * 103.01861 * 337.71644 * 10 9 8 12 12 H 1.09000 * 110.99290 * 277.56635 * 11 10 9 13 13 C 1.50699 * 110.99303 * 153.74518 * 11 10 9 14 14 H 1.08002 * 119.99703 * 241.45490 * 13 11 10 15 15 C 1.37875 * 120.00351 * 61.45341 * 13 11 10 16 16 N 1.31515 * 119.99669 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00439 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.46765 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46845 * 119.99754 * 17 15 13 20 20 H 1.48493 * 109.47297 * 240.00317 * 17 15 13 21 21 C 1.47842 * 111.00238 * 294.28377 * 8 2 1 22 22 H 1.09005 * 109.46814 * 300.00405 * 1 2 3 23 23 H 1.08997 * 109.46620 * 60.00068 * 1 2 3 24 24 H 1.08993 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46992 * 295.00235 * 4 2 1 26 26 H 1.08995 * 109.46994 * 55.00160 * 4 2 1 27 27 H 1.09000 * 109.47281 * 300.00012 * 5 4 2 28 28 H 1.09003 * 109.47226 * 60.00395 * 5 4 2 29 29 H 1.09000 * 109.89463 * 117.33566 * 9 8 2 30 30 H 1.09000 * 109.88994 * 356.14383 * 9 8 2 31 31 H 1.08999 * 110.70846 * 96.09223 * 10 9 8 32 32 H 1.09000 * 110.71111 * 219.33808 * 10 9 8 33 33 H 0.96998 * 120.00060 * 180.02562 * 16 15 13 34 34 H 1.09004 * 110.37187 * 265.19138 * 21 8 2 35 35 H 1.09002 * 110.37256 * 27.42242 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 6 4.0555 -1.3079 -2.5151 7 7 4.4342 -1.8429 -3.4429 8 7 2.0196 -0.6924 1.1996 9 6 1.4538 -2.0506 1.2936 10 6 0.7326 -2.1523 2.6540 11 6 1.4134 -1.0401 3.4945 12 1 2.3541 -1.3916 3.9185 13 6 0.4906 -0.5386 4.5752 14 1 0.1812 0.4961 4.5838 15 6 0.0411 -1.4007 5.5528 16 7 0.4182 -2.6606 5.5424 17 14 -1.1023 -0.7791 6.8927 18 1 -1.3736 0.6656 6.6810 19 1 -2.3798 -1.5346 6.8431 20 1 -0.4630 -0.9739 8.2188 21 6 1.6611 0.0529 2.4250 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7715 -1.2054 26 1 1.6055 -0.2618 -2.1369 27 1 3.8532 0.4369 -1.3573 28 1 3.9995 -1.0729 -0.4258 29 1 2.2531 -2.7899 1.2415 30 1 0.7424 -2.2128 0.4838 31 1 -0.3329 -1.9523 2.5414 32 1 0.8966 -3.1310 3.1051 33 1 0.1018 -3.2673 6.2300 34 1 2.4827 0.7017 2.7286 35 1 0.7564 0.6385 2.2619 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -0.289844 kcal Electronic energy + Delta-G solvation = -15259.128465 eV Core-core repulsion = 12869.888309 eV Total energy + Delta-G solvation = -2389.240156 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.34174 -37.78164 -36.04088 -34.20035 -31.82635 -29.99267 -29.54552 -26.48014 -25.31285 -22.91927 -21.35280 -20.01699 -18.48437 -18.14717 -17.02230 -16.56405 -16.17350 -15.50249 -15.28859 -14.61127 -14.37464 -14.17397 -13.90924 -13.53888 -13.32294 -13.06728 -12.95206 -12.79549 -12.73471 -12.44770 -12.28682 -11.95231 -11.82628 -11.61955 -11.48608 -11.20283 -10.99307 -10.77448 -10.43839 -8.95805 -8.10038 -6.19712 1.41303 1.44052 1.54388 1.87614 1.92595 2.44839 3.18449 3.21650 3.34525 4.07400 4.18445 4.24131 4.43892 4.51809 4.59603 4.70423 4.74252 4.77966 4.88678 4.94765 5.02705 5.13135 5.17908 5.34395 5.35261 5.42965 5.46533 5.56025 5.66576 5.92879 6.01524 6.19140 6.45746 6.51907 6.71312 6.91695 7.48440 8.98848 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.057402 B = 0.005872 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.673415 B = 4767.358855 C = 4940.166611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.102 0.898 4 C -0.098 4.098 5 C -0.016 4.016 6 C 0.240 3.760 7 N -0.513 5.513 8 N -0.519 5.519 9 C 0.044 3.956 10 C -0.108 4.108 11 C 0.036 3.964 12 H 0.001 0.999 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.057 3.943 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.068 0.932 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 6.385 -10.572 12.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.033 4.033 3 H 0.120 0.880 4 C -0.138 4.138 5 C -0.056 4.056 6 C -0.076 4.076 7 N -0.191 5.191 8 N -0.243 5.243 9 C -0.083 4.083 10 C -0.147 4.147 11 C 0.017 3.983 12 H 0.019 0.981 13 C -0.567 4.567 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.071 4.071 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.317 5.402 -11.931 13.300 hybrid contribution -1.709 -0.025 1.592 2.336 sum 0.608 5.377 -10.339 11.669 Atomic orbital electron populations 1.22464 0.97761 1.01898 1.02295 1.21922 0.92596 0.99133 0.89675 0.87971 1.21541 0.93211 1.01493 0.97513 1.19467 0.96124 1.01614 0.88368 1.29981 0.91497 0.92019 0.94111 1.81224 1.11501 1.12224 1.14157 1.63817 1.56328 1.01932 1.02251 1.22824 0.97309 0.91604 0.96588 1.22445 0.97424 0.99955 0.94887 1.19693 0.94099 0.92218 0.92269 0.98089 1.21475 1.28695 0.95842 1.10683 0.92677 1.25718 0.97841 0.95075 0.99866 1.70102 1.45889 1.04755 1.35112 0.85621 0.78698 0.78776 0.79261 1.18872 1.20974 1.20846 1.22955 0.98413 0.96301 0.89395 0.93749 0.90194 0.93241 0.92044 0.89113 0.84553 0.86290 0.91688 0.91710 0.95262 0.94265 0.93243 0.91394 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.33 8.63 71.98 0.62 -3.71 16 2 C 0.08 1.61 2.29 44.91 0.10 1.71 16 3 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 4 C -0.10 -1.63 4.54 30.59 0.14 -1.49 16 5 C -0.02 -0.24 5.59 28.79 0.16 -0.08 16 6 C 0.24 5.08 15.43 89.44 1.38 6.46 16 7 N -0.51 -14.37 18.54 20.01 0.37 -14.00 16 8 N -0.52 -15.41 4.62 -860.36 -3.97 -19.39 16 9 C 0.04 1.49 5.52 86.65 0.48 1.97 16 10 C -0.11 -4.85 5.64 31.78 0.18 -4.67 16 11 C 0.04 1.74 2.96 -10.15 -0.03 1.71 16 12 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 13 C -0.53 -28.18 8.55 25.60 0.22 -27.96 16 14 H 0.05 2.87 7.79 -2.91 -0.02 2.85 16 15 C 0.01 0.75 5.34 84.65 0.45 1.20 16 16 N -0.92 -52.82 12.12 21.45 0.26 -52.56 16 17 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 18 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.06 2.10 5.93 86.77 0.51 2.61 16 22 H 0.04 1.24 6.28 -2.38 -0.01 1.22 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.27 6.06 -2.39 -0.01 1.25 16 25 H 0.06 1.18 6.69 -2.39 -0.02 1.17 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.12 1.98 7.75 -2.39 -0.02 1.96 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.92 4.79 -2.39 -0.01 1.91 16 31 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 32 H 0.04 1.97 7.54 -2.39 -0.02 1.95 16 33 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 34 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.04 1.58 5.79 -2.39 -0.01 1.56 16 Total: -1.00 -63.04 282.57 3.97 -59.07 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.07 Total: 4.28 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 4.22 Total: -22.25 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -3.34 Total: -85.95 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -63.04 3.97 -59.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.783 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds