Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47674 * 2 1 4 4 C 1.53003 * 109.46836 * 119.99839 * 2 1 3 5 5 C 1.53008 * 109.46983 * 183.35328 * 4 2 1 6 6 C 1.47192 * 109.46892 * 175.31875 * 5 4 2 7 7 N 4.86429 * 126.53552 * 115.81876 * 2 1 3 8 8 N 1.46901 * 109.47059 * 239.99376 * 2 1 3 9 9 C 1.48562 * 110.99547 * 67.36614 * 8 2 1 10 10 C 1.54379 * 104.59120 * 200.95651 * 9 8 2 11 11 C 1.54256 * 105.06409 * 23.85672 * 10 9 8 12 12 H 1.08999 * 110.32657 * 241.00025 * 11 10 9 13 13 C 1.50702 * 110.32622 * 118.89053 * 11 10 9 14 14 H 1.07997 * 120.00040 * 241.45750 * 13 11 10 15 15 C 1.37870 * 119.99934 * 61.45646 * 13 11 10 16 16 N 1.31522 * 120.00067 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00037 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47038 * 269.99900 * 17 15 13 19 19 H 1.48501 * 109.47219 * 150.00054 * 17 15 13 20 20 H 1.48499 * 109.47251 * 30.00283 * 17 15 13 21 21 C 1.48559 * 111.00329 * 311.94999 * 8 2 1 22 22 H 1.08998 * 109.47019 * 67.84243 * 1 2 3 23 23 H 1.08994 * 109.47592 * 187.84333 * 1 2 3 24 24 H 1.09007 * 109.46871 * 307.84784 * 1 2 3 25 25 H 1.08998 * 109.47351 * 303.35259 * 4 2 1 26 26 H 1.09000 * 109.47428 * 63.35288 * 4 2 1 27 27 H 1.09007 * 109.46782 * 295.31346 * 5 4 2 28 28 H 1.08989 * 109.47117 * 55.31520 * 5 4 2 29 29 H 1.09002 * 110.41239 * 82.18470 * 9 8 2 30 30 H 1.09001 * 110.41527 * 319.73928 * 9 8 2 31 31 H 1.08998 * 110.32704 * 264.95387 * 10 9 8 32 32 H 1.09010 * 110.40828 * 142.79253 * 10 9 8 33 33 H 0.96997 * 119.99327 * 0.02562 * 16 15 13 34 34 H 1.08997 * 110.40964 * 40.25293 * 21 8 2 35 35 H 1.08997 * 110.40948 * 277.81695 * 21 8 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5676 -0.6486 1.2922 6 6 4.0519 -1.2432 2.5486 7 7 4.4258 -1.7022 3.5182 8 7 2.0196 -0.6926 -1.1994 9 6 1.6938 0.0760 -2.4282 10 6 1.7590 -0.9647 -3.5667 11 6 1.5151 -2.3248 -2.8810 12 1 2.3773 -2.9775 -3.0172 13 6 0.2742 -2.9756 -3.4357 14 1 -0.5621 -3.1858 -2.7855 15 6 0.2065 -3.3026 -4.7734 16 7 1.2247 -3.0461 -5.5654 17 14 -1.3313 -4.1099 -5.4609 18 1 -1.2020 -5.5860 -5.3617 19 1 -1.4996 -3.7224 -6.8845 20 1 -2.5148 -3.6633 -4.6831 21 6 1.3230 -1.9915 -1.3859 22 1 -0.3633 0.3876 -0.9518 23 1 -0.3634 -1.0180 0.1402 24 1 -0.3633 0.6306 0.8116 25 1 1.6283 -0.2433 2.1383 26 1 1.7265 -1.7648 1.2198 27 1 3.9814 -1.1984 0.4468 28 1 3.8835 0.3931 1.2378 29 1 2.4298 0.8634 -2.5905 30 1 0.6920 0.4996 -2.3573 31 1 2.7417 -0.9491 -4.0380 32 1 0.9822 -0.7687 -4.3059 33 1 2.0234 -2.6273 -5.2082 34 1 0.2632 -1.8914 -1.1517 35 1 1.7798 -2.7606 -0.7632 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695839112.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -3.847088 kcal Electronic energy + Delta-G solvation = -15319.386186 eV Core-core repulsion = 12929.991776 eV Total energy + Delta-G solvation = -2389.394410 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41316 -37.87398 -36.40626 -34.31792 -31.87023 -30.01635 -29.23204 -26.18524 -25.72770 -23.08634 -21.45187 -20.14168 -18.98006 -18.22793 -16.88506 -16.58778 -15.72317 -15.65524 -15.27001 -15.09910 -14.60206 -14.22406 -14.00859 -13.85596 -13.44425 -13.15488 -12.88169 -12.72935 -12.46234 -12.24812 -12.02760 -12.01072 -11.93084 -11.72053 -11.60049 -11.41214 -11.19238 -10.48738 -10.38286 -9.20932 -8.53141 -6.26197 1.54677 1.62307 1.79332 1.82608 1.87596 2.59860 3.13278 3.23854 3.26833 3.97171 4.06767 4.14983 4.33077 4.39843 4.46242 4.57346 4.61273 4.69007 4.83020 4.84549 4.91574 4.99764 5.10053 5.15699 5.23678 5.30938 5.32776 5.46759 5.53468 5.73960 5.89098 6.23759 6.29215 6.36664 6.66277 6.74549 7.54164 8.85974 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.039212 B = 0.006319 C = 0.006206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.888181 B = 4430.221377 C = 4510.772365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.070 3.930 3 H 0.110 0.890 4 C -0.097 4.097 5 C -0.014 4.014 6 C 0.238 3.762 7 N -0.511 5.511 8 N -0.503 5.503 9 C 0.044 3.956 10 C -0.107 4.107 11 C 0.019 3.981 12 H -0.011 1.011 13 C -0.604 4.604 14 H 0.042 0.958 15 C -0.030 4.030 16 N -0.939 5.939 17 Si 1.111 2.889 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.053 3.947 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 9.299 9.958 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.039 4.039 3 H 0.128 0.872 4 C -0.137 4.137 5 C -0.054 4.054 6 C -0.078 4.078 7 N -0.189 5.189 8 N -0.226 5.226 9 C -0.084 4.084 10 C -0.146 4.146 11 C 0.000 4.000 12 H 0.007 0.993 13 C -0.643 4.643 14 H 0.061 0.939 15 C -0.228 4.228 16 N -0.576 5.576 17 Si 0.934 3.066 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.075 4.075 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.129 7.962 10.128 12.884 hybrid contribution -0.216 0.420 0.568 0.739 sum -0.087 8.383 10.696 13.590 Atomic orbital electron populations 1.22432 0.97595 1.02040 1.02348 1.21945 0.92866 0.99284 0.89801 0.87195 1.21488 0.93179 1.01325 0.97672 1.19441 0.96099 1.03404 0.86477 1.29986 0.91537 0.91744 0.94493 1.81223 1.11427 1.11938 1.14336 1.65586 1.52278 1.02816 1.01955 1.23025 0.99696 0.95999 0.89631 1.22277 0.98264 0.96809 0.97230 1.19543 0.94719 0.92804 0.92932 0.99311 1.22404 1.02048 1.43176 0.96639 0.93932 1.27052 1.04735 0.96312 0.94737 1.70852 1.06143 1.41702 1.38935 0.82997 0.72127 0.76047 0.75440 1.20386 1.21116 1.19759 1.22998 0.96739 0.91741 0.96009 0.93422 0.93367 0.89947 0.89048 0.92658 0.86684 0.84285 0.88961 0.93786 0.94648 0.94802 0.92630 0.93636 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.16 8.15 71.98 0.59 -3.57 16 2 C 0.07 1.43 2.36 44.91 0.11 1.54 16 3 H 0.11 1.72 8.11 -2.39 -0.02 1.70 16 4 C -0.10 -1.71 4.65 30.60 0.14 -1.56 16 5 C -0.01 -0.23 5.52 28.79 0.16 -0.07 16 6 C 0.24 5.27 15.43 89.44 1.38 6.65 16 7 N -0.51 -14.77 18.54 20.00 0.37 -14.40 16 8 N -0.50 -14.72 4.81 -856.34 -4.12 -18.84 16 9 C 0.04 1.43 6.34 86.45 0.55 1.98 16 10 C -0.11 -4.72 5.03 31.49 0.16 -4.56 16 11 C 0.02 0.92 2.65 -10.64 -0.03 0.90 16 12 H -0.01 -0.61 8.04 -2.39 -0.02 -0.63 16 13 C -0.60 -32.98 8.37 25.60 0.21 -32.77 16 14 H 0.04 2.30 7.58 -2.91 -0.02 2.28 16 15 C -0.03 -1.66 5.09 84.65 0.43 -1.23 16 16 N -0.94 -56.18 13.27 21.45 0.28 -55.90 16 17 Si 1.11 49.62 29.90 68.60 2.05 51.68 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 C 0.05 1.99 5.07 86.45 0.44 2.43 16 22 H 0.05 1.23 6.11 -2.39 -0.01 1.21 16 23 H 0.05 1.24 6.40 -2.39 -0.02 1.23 16 24 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.19 7.21 -2.39 -0.02 1.17 16 27 H 0.12 2.08 7.84 -2.38 -0.02 2.06 16 28 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.04 1.41 5.99 -2.39 -0.01 1.39 16 31 H 0.03 1.56 7.92 -2.39 -0.02 1.55 16 32 H 0.03 1.68 7.23 -2.38 -0.02 1.66 16 33 H 0.26 15.78 6.00 -92.71 -0.56 15.23 16 34 H 0.05 1.76 4.94 -2.39 -0.01 1.75 16 35 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 Total: -1.00 -66.19 280.17 4.00 -62.19 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.28 Total: 5.53 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.14 Total: -30.26 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -3.47 Total: -89.13 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.68 kcal Total: -66.19 4.00 -62.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695839112.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.344 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds