Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.39869 * 126.04006 * 300.02681 * 4 2 1 6 6 N 1.30837 * 108.20397 * 179.97438 * 5 4 2 7 7 N 1.40085 * 108.20285 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03671 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47130 * 334.97560 * 8 7 6 10 10 C 1.52998 * 109.47355 * 214.97672 * 8 7 6 11 11 C 1.53005 * 109.47128 * 94.97652 * 8 7 6 12 12 C 1.50695 * 109.46891 * 185.00399 * 11 8 7 13 13 H 1.08007 * 120.00382 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99900 * 180.02562 * 12 11 8 15 15 N 1.31511 * 119.99755 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00144 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47109 * 89.99929 * 16 14 12 18 18 H 1.48492 * 109.47198 * 210.00027 * 16 14 12 19 19 H 1.48501 * 109.47050 * 329.99786 * 16 14 12 20 20 C 1.34944 * 107.92669 * 359.75984 * 7 6 5 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08003 * 125.89815 * 359.95815 * 5 4 2 29 29 H 1.08999 * 109.47491 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.46910 * 300.00022 * 10 8 7 31 31 H 1.09006 * 109.46846 * 60.00128 * 10 8 7 32 32 H 1.09003 * 109.46719 * 304.99606 * 11 8 7 33 33 H 1.08991 * 109.46985 * 64.99929 * 11 8 7 34 34 H 0.97001 * 119.99667 * 179.97438 * 15 14 12 35 35 H 1.08003 * 126.12591 * 180.24194 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7732 -0.3447 2.5553 6 7 2.3770 -1.1992 3.3408 7 7 3.0401 -2.1374 2.5393 8 6 3.8388 -3.2686 3.0178 9 1 4.2162 -3.0501 4.0168 10 6 5.0153 -3.5004 2.0676 11 6 2.9666 -4.5248 3.0655 12 6 3.7519 -5.6587 3.6726 13 1 4.7713 -5.4995 3.9920 14 6 3.1694 -6.8998 3.8193 15 7 1.9283 -7.0938 3.4299 16 14 4.1430 -8.3056 4.5711 17 1 3.9448 -8.3136 6.0427 18 1 3.6728 -9.5937 4.0013 19 1 5.5855 -8.1270 4.2669 20 6 2.8084 -1.8188 1.2487 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.1776 0.4978 2.8748 29 1 5.6098 -4.3417 2.4238 30 1 4.6379 -3.7189 1.0686 31 1 5.6367 -2.6054 2.0336 32 1 2.0820 -4.3300 3.6719 33 1 2.6620 -4.7942 2.0543 34 1 1.5186 -7.9670 3.5327 35 1 3.1785 -2.3513 0.3850 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695872133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = 47.239644 kcal Electronic energy + Delta-G solvation = -15015.537558 eV Core-core repulsion = 12628.358435 eV Total energy + Delta-G solvation = -2387.179123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.76256 -35.95323 -34.57431 -32.44010 -29.68907 -28.51837 -27.09398 -26.96109 -23.98290 -22.06560 -21.66163 -19.37737 -18.96044 -16.65492 -15.84953 -14.82809 -14.44754 -14.20913 -14.15149 -13.70380 -13.27633 -12.89934 -12.41521 -12.32251 -12.07385 -11.94202 -11.56605 -11.23071 -11.05519 -11.00769 -10.88020 -10.73600 -10.60391 -10.18047 -9.91027 -9.84056 -9.32145 -8.73625 -8.47894 -7.76421 -6.11887 -4.16703 2.53182 3.18733 3.25945 3.27739 3.32900 3.35281 4.36966 4.93019 5.14592 5.24131 5.34593 5.41688 5.42532 5.63699 5.75137 5.75507 5.83844 5.94322 5.94926 5.97826 6.16489 6.20321 6.37397 6.43693 6.47794 6.62389 6.63620 6.70899 7.18287 7.45115 7.53083 7.67691 7.88478 8.20714 8.34192 8.88109 9.47848 10.99373 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.049892 B = 0.005812 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.082395 B = 4816.784573 C = 4993.601915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.139 4.139 4 C -0.251 4.251 5 C 0.036 3.964 6 N -0.299 5.299 7 N -0.344 5.344 8 C 0.152 3.848 9 H 0.090 0.910 10 C -0.147 4.147 11 C 0.020 3.980 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.061 3.939 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.170 0.830 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 12.175 -6.950 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.263 4.263 5 C -0.149 4.149 6 N -0.121 5.121 7 N -0.124 5.124 8 C 0.052 3.948 9 H 0.109 0.891 10 C -0.206 4.206 11 C -0.018 4.018 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.088 4.088 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.187 0.813 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.312 11.572 -5.671 12.953 hybrid contribution 0.175 -0.705 -0.412 0.836 sum 1.487 10.866 -6.084 12.542 Atomic orbital electron populations 1.21818 0.95269 1.01779 1.00990 1.19294 0.94876 0.94725 0.94289 1.21808 1.00876 0.95948 1.01041 1.19867 1.10095 1.01281 0.95068 1.23474 1.00733 0.99236 0.91438 1.77307 1.13169 1.01945 1.19682 1.49246 1.37814 1.21910 1.03477 1.21814 0.90982 0.83843 0.98135 0.89140 1.22063 0.97195 1.01795 0.99516 1.19484 0.95012 0.89112 0.98200 1.21030 0.99184 0.94500 1.41488 0.92132 1.25005 0.94928 0.98862 0.95356 1.69974 1.12593 1.23517 1.46750 0.86524 0.80168 0.81472 0.79449 1.20524 1.21137 1.19724 1.22206 1.00083 0.97314 0.89148 0.92814 0.92686 0.93213 0.91378 0.92829 0.92981 0.93211 0.81316 0.89246 0.92445 0.93745 0.95701 0.95973 0.92754 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.08 37.16 0.34 -1.27 16 2 C -0.01 -0.15 3.28 -91.78 -0.30 -0.45 16 3 C -0.14 -1.47 9.08 37.16 0.34 -1.13 16 4 C -0.25 -3.94 4.80 -105.06 -0.50 -4.45 16 5 C 0.04 0.61 11.45 -17.37 -0.20 0.41 16 6 N -0.30 -6.10 12.58 30.62 0.39 -5.72 16 7 N -0.34 -6.90 3.52 -54.86 -0.19 -7.09 16 8 C 0.15 3.18 3.35 -67.93 -0.23 2.96 16 9 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 10 C -0.15 -2.58 8.65 37.16 0.32 -2.26 16 11 C 0.02 0.51 4.77 -27.88 -0.13 0.38 16 12 C -0.52 -14.13 8.41 -34.44 -0.29 -14.42 16 13 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.06 1.06 10.48 -17.23 -0.18 0.88 16 21 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 25 H 0.05 0.55 8.02 -51.93 -0.42 0.14 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.17 2.30 8.06 -52.48 -0.42 1.88 16 29 H 0.09 1.60 6.95 -51.93 -0.36 1.24 16 30 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.16 2.45 7.27 -52.48 -0.38 2.07 16 LS Contribution 293.15 15.07 4.42 4.42 Total: -1.00 -30.27 293.15 -6.29 -36.56 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.68 Total: -0.81 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -0.94 Total: -17.76 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.93 Total: -38.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.27 -6.29 -36.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695872133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.800 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds