Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.39869 * 126.04006 * 300.02681 * 4 2 1 6 6 N 1.30837 * 108.20397 * 179.97438 * 5 4 2 7 7 N 1.40085 * 108.20285 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03671 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47130 * 334.97560 * 8 7 6 10 10 C 1.52998 * 109.47355 * 214.97672 * 8 7 6 11 11 C 1.53005 * 109.47128 * 94.97652 * 8 7 6 12 12 C 1.50695 * 109.46891 * 185.00399 * 11 8 7 13 13 H 1.08007 * 120.00382 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99900 * 180.02562 * 12 11 8 15 15 N 1.31511 * 119.99755 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00144 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47109 * 89.99929 * 16 14 12 18 18 H 1.48492 * 109.47198 * 210.00027 * 16 14 12 19 19 H 1.48501 * 109.47050 * 329.99786 * 16 14 12 20 20 C 1.34944 * 107.92669 * 359.75984 * 7 6 5 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.08003 * 125.89815 * 359.95815 * 5 4 2 29 29 H 1.08999 * 109.47491 * 179.97438 * 10 8 7 30 30 H 1.09004 * 109.46910 * 300.00022 * 10 8 7 31 31 H 1.09006 * 109.46846 * 60.00128 * 10 8 7 32 32 H 1.09003 * 109.46719 * 304.99606 * 11 8 7 33 33 H 1.08991 * 109.46985 * 64.99929 * 11 8 7 34 34 H 0.97001 * 119.99667 * 179.97438 * 15 14 12 35 35 H 1.08003 * 126.12591 * 180.24194 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7732 -0.3447 2.5553 6 7 2.3770 -1.1992 3.3408 7 7 3.0401 -2.1374 2.5393 8 6 3.8388 -3.2686 3.0178 9 1 4.2162 -3.0501 4.0168 10 6 5.0153 -3.5004 2.0676 11 6 2.9666 -4.5248 3.0655 12 6 3.7519 -5.6587 3.6726 13 1 4.7713 -5.4995 3.9920 14 6 3.1694 -6.8998 3.8193 15 7 1.9283 -7.0938 3.4299 16 14 4.1430 -8.3056 4.5711 17 1 3.9448 -8.3136 6.0427 18 1 3.6728 -9.5937 4.0013 19 1 5.5855 -8.1270 4.2669 20 6 2.8084 -1.8188 1.2487 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.1776 0.4978 2.8748 29 1 5.6098 -4.3417 2.4238 30 1 4.6379 -3.7189 1.0686 31 1 5.6367 -2.6054 2.0336 32 1 2.0820 -4.3300 3.6719 33 1 2.6620 -4.7942 2.0543 34 1 1.5186 -7.9670 3.5327 35 1 3.1785 -2.3513 0.3850 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695872133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = 29.936708 kcal Electronic energy + Delta-G solvation = -15016.287870 eV Core-core repulsion = 12628.358435 eV Total energy + Delta-G solvation = -2387.929434 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15206 -37.41956 -35.91790 -34.39997 -31.24698 -29.89997 -28.87156 -27.81600 -25.81021 -23.49577 -23.06331 -20.80378 -20.32900 -18.64550 -17.33387 -16.69015 -15.78647 -15.62545 -15.53695 -14.84888 -14.79533 -14.32009 -13.91974 -13.70707 -13.53570 -13.12337 -12.90730 -12.85772 -12.75069 -12.37354 -12.33478 -11.94698 -11.90108 -11.75452 -11.64022 -11.39818 -11.14025 -10.63487 -10.25108 -9.13844 -8.25416 -6.38334 1.11893 1.40660 1.42184 1.53044 1.74452 1.98477 2.39482 3.09141 3.68300 4.01988 4.09416 4.20541 4.22158 4.37359 4.41508 4.50922 4.79280 4.85505 4.89671 4.91846 4.95579 4.99640 5.13863 5.21018 5.27345 5.33486 5.36279 5.45073 5.55610 5.62148 5.68972 5.91282 6.04558 6.32277 6.76282 6.93443 7.31749 8.87099 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.049892 B = 0.005812 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.082395 B = 4816.784573 C = 4993.601915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.012 4.012 3 C -0.135 4.135 4 C -0.241 4.241 5 C 0.041 3.959 6 N -0.347 5.347 7 N -0.365 5.365 8 C 0.162 3.838 9 H 0.079 0.921 10 C -0.136 4.136 11 C 0.032 3.968 12 C -0.534 4.534 13 H 0.075 0.925 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.254 1.254 20 C 0.045 3.955 21 H 0.055 0.945 22 H 0.036 0.964 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.199 0.801 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.069 0.931 32 H -0.024 1.024 33 H -0.001 1.001 34 H 0.264 0.736 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 13.127 -7.917 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.192 4.192 4 C -0.253 4.253 5 C -0.144 4.144 6 N -0.169 5.169 7 N -0.147 5.147 8 C 0.061 3.939 9 H 0.098 0.902 10 C -0.194 4.194 11 C -0.006 4.006 12 C -0.573 4.573 13 H 0.093 0.907 14 C -0.196 4.196 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.178 1.178 20 C -0.101 4.101 21 H 0.074 0.926 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.216 0.784 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.088 0.912 32 H -0.005 1.005 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.377 12.549 -6.653 14.401 hybrid contribution -0.255 -0.900 -0.147 0.947 sum 2.122 11.649 -6.801 13.655 Atomic orbital electron populations 1.21805 0.94554 1.01021 1.02315 1.19421 0.95384 0.95624 0.92738 1.21765 1.00572 0.94634 1.02238 1.20326 1.08486 1.00430 0.96012 1.24058 0.99587 0.99008 0.91777 1.77251 1.14902 1.03354 1.21385 1.49107 1.39034 1.22152 1.04371 1.21464 0.91101 0.82306 0.98993 0.90238 1.21959 0.95834 1.02821 0.98778 1.19256 0.94064 0.91663 0.95580 1.21463 0.99881 0.94960 1.40955 0.90677 1.26009 0.95873 1.01991 0.95764 1.70128 1.14624 1.24295 1.48384 0.85365 0.79365 0.77562 0.78291 1.20201 1.20930 1.17788 1.22733 1.00580 0.98094 0.88743 0.92618 0.94474 0.90839 0.90512 0.92631 0.93435 0.91077 0.78399 0.89599 0.91691 0.91178 1.00543 0.98278 0.92706 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.08 71.98 0.65 -2.21 16 2 C -0.01 -0.26 3.28 -11.54 -0.04 -0.30 16 3 C -0.13 -2.42 9.08 71.98 0.65 -1.76 16 4 C -0.24 -7.24 4.80 -20.15 -0.10 -7.34 16 5 C 0.04 1.33 11.45 85.24 0.98 2.31 16 6 N -0.35 -14.32 12.58 -57.02 -0.72 -15.04 16 7 N -0.37 -14.83 3.52 -327.47 -1.15 -15.99 16 8 C 0.16 6.91 3.35 44.99 0.15 7.07 16 9 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 10 C -0.14 -4.62 8.65 71.98 0.62 -3.99 16 11 C 0.03 1.73 4.77 29.85 0.14 1.87 16 12 C -0.53 -29.28 8.41 25.60 0.22 -29.06 16 13 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 14 C 0.00 0.10 5.46 84.66 0.46 0.57 16 15 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 16 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 20 C 0.05 1.55 10.48 83.54 0.88 2.42 16 21 H 0.05 1.11 8.02 -2.39 -0.02 1.09 16 22 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 25 H 0.05 0.97 8.02 -2.39 -0.02 0.96 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.20 5.04 8.06 -2.91 -0.02 5.01 16 29 H 0.09 2.97 6.95 -2.39 -0.02 2.95 16 30 H 0.06 2.08 7.16 -2.38 -0.02 2.07 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.18 5.28 7.27 -2.91 -0.02 5.26 16 Total: -1.00 -67.10 293.15 6.10 -61.00 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.04 Total: 11.88 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 4.62 Total: -30.43 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.59 Total: -87.66 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.10 6.10 -61.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695872133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.937 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds