Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46757 * 2 1 4 4 C 1.52996 * 109.47184 * 239.99915 * 2 1 3 5 5 C 1.50705 * 109.47229 * 174.99670 * 4 2 1 6 6 H 1.07999 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99957 * 359.72321 * 7 5 4 9 9 Si 1.86797 * 120.00006 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46981 * 179.72034 * 9 7 5 11 11 H 1.48499 * 109.47059 * 299.72242 * 9 7 5 12 12 H 1.48501 * 109.47215 * 59.72149 * 9 7 5 13 13 N 1.46896 * 109.47277 * 119.99734 * 2 1 3 14 14 C 1.46901 * 110.99862 * 46.76437 * 13 2 1 15 15 C 1.46904 * 111.00208 * 282.80960 * 13 2 1 16 16 C 1.47203 * 112.84741 * 56.97750 * 15 13 2 17 17 N 3.62126 * 55.39904 * 70.39183 * 2 1 3 18 18 C 1.53779 * 113.61308 * 285.67234 * 15 13 2 19 19 C 1.53784 * 87.08110 * 220.01690 * 18 15 13 20 20 C 1.53775 * 113.61679 * 188.17475 * 15 13 2 21 21 H 1.08999 * 109.47051 * 308.55914 * 1 2 3 22 22 H 1.08998 * 109.46907 * 68.55991 * 1 2 3 23 23 H 1.09000 * 109.46902 * 188.55607 * 1 2 3 24 24 H 1.09000 * 109.47017 * 55.00129 * 4 2 1 25 25 H 1.09000 * 109.47282 * 294.99979 * 4 2 1 26 26 H 0.96995 * 119.99742 * 0.28279 * 8 7 5 27 27 H 1.09001 * 109.47149 * 59.99880 * 14 13 2 28 28 H 1.09002 * 109.46938 * 180.02562 * 14 13 2 29 29 H 1.09004 * 109.47006 * 300.00041 * 14 13 2 30 30 H 1.08998 * 113.61388 * 334.56448 * 18 15 13 31 31 H 1.08997 * 113.61408 * 105.47012 * 18 15 13 32 32 H 1.08997 * 113.61372 * 270.88538 * 19 18 15 33 33 H 1.08998 * 113.68869 * 139.99209 * 19 18 15 34 34 H 1.08999 * 113.61228 * 254.53475 * 20 15 13 35 35 H 1.09003 * 113.61177 * 25.43117 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0789 -0.0853 -0.5397 7 6 4.2304 -1.1925 -2.3583 8 7 3.5768 -1.8412 -3.2974 9 14 6.0921 -1.0612 -2.4366 10 1 6.5876 -1.7664 -3.6459 11 1 6.4851 0.3693 -2.5019 12 1 6.6836 -1.6822 -1.2243 13 7 2.0197 -0.6924 1.1994 14 6 1.3095 -1.9624 1.4009 15 6 1.9085 0.1669 2.3857 16 6 0.5342 0.6373 2.6240 17 7 -0.5264 1.0003 2.8079 18 6 2.9622 1.2859 2.4367 19 6 3.0715 1.0066 3.9450 20 6 2.5846 -0.4190 3.6364 21 1 -0.3633 0.6406 0.8036 22 1 -0.3633 0.3756 -0.9565 23 1 -0.3633 -1.0162 0.1529 24 1 1.6054 -0.2617 -2.1369 25 1 1.7517 -1.7715 -1.2056 26 1 2.6102 -1.9096 -3.2565 27 1 1.4663 -2.6076 0.5364 28 1 1.6912 -2.4542 2.2957 29 1 0.2436 -1.7677 1.5204 30 1 3.8719 1.0545 1.8828 31 1 2.5627 2.2727 2.2032 32 1 2.3723 1.5858 4.5481 33 1 4.0923 1.0468 4.3249 34 1 1.8803 -0.8087 4.3714 35 1 3.3912 -1.1166 3.4104 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = 40.074697 kcal Electronic energy + Delta-G solvation = -15806.334848 eV Core-core repulsion = 13418.845029 eV Total energy + Delta-G solvation = -2387.489818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40638 -37.81805 -37.07666 -35.01936 -31.95904 -28.89930 -28.16856 -26.54258 -25.52118 -24.56656 -21.97207 -21.01608 -18.76498 -18.03160 -17.11601 -16.37078 -15.71483 -15.59747 -15.51605 -15.13842 -14.83113 -14.29596 -14.19386 -13.80739 -13.47681 -13.16408 -12.87545 -12.83527 -12.66254 -12.56420 -12.42326 -12.17979 -11.88364 -11.83670 -11.59758 -11.20444 -11.08102 -10.55865 -10.39279 -9.38108 -8.48848 -6.15196 1.52315 1.53287 1.61920 1.70824 1.88243 2.69851 2.70709 2.98390 3.35825 3.56381 3.67343 3.88390 3.96913 4.14799 4.20812 4.32675 4.45216 4.54073 4.76245 4.82562 4.89139 4.94628 4.99105 5.02296 5.06672 5.15032 5.19103 5.23763 5.42714 5.52076 6.03375 6.15721 6.24367 6.37110 6.41721 6.77629 7.63291 8.91733 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.009133 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.684650 B = 3065.091884 C = 3580.341226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.100 3.900 3 H 0.070 0.930 4 C 0.025 3.975 5 C -0.571 4.571 6 H 0.062 0.938 7 C -0.049 4.049 8 N -0.953 5.953 9 Si 1.115 2.885 10 H -0.295 1.295 11 H -0.271 1.271 12 H -0.266 1.266 13 N -0.483 5.483 14 C 0.018 3.982 15 C 0.143 3.857 16 C 0.232 3.768 17 N -0.472 5.472 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.100 4.100 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.059 0.941 24 H -0.017 1.017 25 H -0.008 1.008 26 H 0.250 0.750 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.024 0.976 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 3.501 14.885 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.008 4.008 3 H 0.088 0.912 4 C -0.012 4.012 5 C -0.609 4.609 6 H 0.081 0.919 7 C -0.244 4.244 8 N -0.593 5.593 9 Si 0.937 3.063 10 H -0.221 1.221 11 H -0.196 1.196 12 H -0.191 1.191 13 N -0.204 5.204 14 C -0.130 4.130 15 C 0.049 3.951 16 C -0.087 4.087 17 N -0.149 5.149 18 C -0.149 4.149 19 C -0.165 4.165 20 C -0.139 4.139 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.010 0.990 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.043 0.957 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.893 3.504 14.200 14.653 hybrid contribution -2.518 0.286 0.123 2.537 sum -1.625 3.789 14.322 14.904 Atomic orbital electron populations 1.22843 0.98511 1.02184 1.02272 1.21505 0.90836 0.97663 0.90814 0.91205 1.19152 0.96629 0.93954 0.91502 1.22264 0.92468 1.36243 1.09906 0.91942 1.27273 1.10890 0.93448 0.92758 1.70934 1.09245 1.42923 1.36185 0.82957 0.69832 0.77163 0.76319 1.22138 1.19594 1.19128 1.62786 1.54298 1.03304 1.00021 1.22494 0.95689 0.91741 1.03033 1.20622 0.82594 0.97520 0.94381 1.30106 0.95317 0.92321 0.90947 1.81118 1.13248 1.10185 1.10342 1.23070 0.97653 0.95652 0.98570 1.22799 1.03771 0.95365 0.94562 1.23065 1.00241 0.98621 0.91950 0.92112 0.92755 0.92163 0.99901 0.98972 0.94062 0.92520 0.88747 0.95728 0.87473 0.91405 0.89833 0.87796 0.89969 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.36 8.09 71.98 0.58 -6.78 16 2 C 0.10 4.00 2.06 44.91 0.09 4.09 16 3 H 0.07 2.84 7.45 -2.38 -0.02 2.82 16 4 C 0.02 1.25 3.78 29.85 0.11 1.36 16 5 C -0.57 -30.90 8.84 25.60 0.23 -30.68 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 7 C -0.05 -2.75 5.46 84.65 0.46 -2.29 16 8 N -0.95 -59.16 13.65 21.45 0.29 -58.87 16 9 Si 1.11 49.50 29.90 68.60 2.05 51.55 16 10 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 13 N -0.48 -16.50 4.32 -854.77 -3.69 -20.19 16 14 C 0.02 0.58 8.33 127.69 1.06 1.64 16 15 C 0.14 3.87 0.53 2.25 0.00 3.87 16 16 C 0.23 6.94 10.48 89.44 0.94 7.88 16 17 N -0.47 -15.73 17.24 20.01 0.34 -15.39 16 18 C -0.11 -2.61 6.76 31.12 0.21 -2.40 16 19 C -0.13 -2.15 7.79 31.12 0.24 -1.91 16 20 C -0.10 -1.95 6.38 31.12 0.20 -1.75 16 21 H 0.06 2.16 4.25 -2.39 -0.01 2.15 16 22 H 0.05 2.02 8.12 -2.39 -0.02 2.00 16 23 H 0.06 2.18 5.78 -2.39 -0.01 2.17 16 24 H -0.02 -0.95 8.00 -2.39 -0.02 -0.97 16 25 H -0.01 -0.43 6.51 -2.39 -0.02 -0.44 16 26 H 0.25 15.80 7.22 -92.71 -0.67 15.13 16 27 H 0.06 2.09 6.67 -2.39 -0.02 2.07 16 28 H 0.09 2.40 7.33 -2.39 -0.02 2.39 16 29 H 0.02 0.77 5.52 -2.38 -0.01 0.75 16 30 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 32 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -65.61 278.24 4.30 -61.31 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.17 Total: 8.54 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.13 Total: -26.96 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -3.05 Total: -94.45 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -65.61 4.30 -61.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.390 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds