Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47085 * 2 1 4 4 C 1.53004 * 109.47261 * 239.99774 * 2 1 3 5 5 C 1.50695 * 109.47104 * 175.00422 * 4 2 1 6 6 H 1.08000 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99900 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46858 * 89.99416 * 9 7 5 11 11 H 1.48494 * 109.47398 * 209.99843 * 9 7 5 12 12 H 1.48501 * 109.47068 * 329.99909 * 9 7 5 13 13 N 1.46900 * 109.46529 * 119.99784 * 2 1 3 14 14 C 1.46896 * 111.00209 * 58.95713 * 13 2 1 15 15 C 1.46893 * 111.00355 * 294.99763 * 13 2 1 16 16 C 1.50699 * 109.47638 * 190.00534 * 15 13 2 17 17 C 1.34854 * 125.89246 * 94.99677 * 16 15 13 18 18 C 1.40884 * 107.41513 * 179.74330 * 17 16 15 19 19 C 1.34850 * 107.42192 * 359.97438 * 18 17 16 20 20 N 1.36338 * 108.21433 * 359.97438 * 19 18 17 21 21 H 0.97003 * 125.63151 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47020 * 59.99976 * 1 2 3 23 23 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47593 * 300.00607 * 1 2 3 25 25 H 1.09006 * 109.46351 * 295.00430 * 4 2 1 26 26 H 1.08998 * 109.47096 * 54.99716 * 4 2 1 27 27 H 0.96992 * 120.00405 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47217 * 296.04109 * 14 13 2 29 29 H 1.08998 * 109.47263 * 56.03773 * 14 13 2 30 30 H 1.09003 * 109.47274 * 176.04285 * 14 13 2 31 31 H 1.09000 * 109.47022 * 69.99941 * 15 13 2 32 32 H 1.09005 * 109.47144 * 310.00323 * 15 13 2 33 33 H 1.07998 * 126.29032 * 359.76354 * 17 16 15 34 34 H 1.08004 * 126.28899 * 179.97438 * 18 17 16 35 35 H 1.08001 * 125.89235 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2999 9 14 6.0920 -1.0605 -2.4372 10 1 6.7007 -2.2131 -1.7257 11 1 6.5290 -1.0679 -3.8564 12 1 6.5261 0.2047 -1.7922 13 7 2.0195 -0.6925 1.1995 14 6 1.5282 -2.0760 1.2460 15 6 1.6486 0.0392 2.4180 16 6 2.3677 -0.5570 3.6006 17 6 3.5335 -0.1205 4.1193 18 6 3.8458 -0.9516 5.2131 19 6 2.8589 -1.8641 5.3216 20 7 1.9483 -1.6263 4.3351 21 1 1.1365 -2.1344 4.1810 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.7516 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1370 27 1 4.0606 -2.2432 -4.0357 28 1 0.4418 -2.0730 1.3348 29 1 1.8165 -2.5950 0.3319 30 1 1.9616 -2.5868 2.1060 31 1 0.5721 -0.0344 2.5725 32 1 1.9297 1.0871 2.3125 33 1 4.1197 0.7133 3.7620 34 1 4.7159 -0.8726 5.8480 35 1 2.7995 -2.6475 6.0627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = 48.349604 kcal Electronic energy + Delta-G solvation = -15357.018175 eV Core-core repulsion = 12969.887184 eV Total energy + Delta-G solvation = -2387.130991 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.85560 -37.70501 -32.98771 -31.26681 -30.67621 -28.93945 -27.41869 -26.14138 -23.92631 -22.46121 -20.35023 -19.81838 -18.77108 -17.14543 -16.15490 -15.64501 -14.48803 -14.28879 -13.95207 -13.57377 -13.34443 -13.09779 -12.59179 -12.27549 -11.96910 -11.84757 -11.70089 -11.51065 -11.16957 -10.90436 -10.74163 -10.61725 -10.38084 -9.94781 -9.18398 -8.97443 -8.57007 -8.23619 -7.81495 -7.44822 -5.86880 -3.84522 2.50479 3.30294 3.42841 3.48312 3.53406 3.56005 4.59284 4.75051 5.20401 5.32571 5.46167 5.51014 5.70238 5.73352 5.80062 5.86540 5.97234 5.99362 6.02583 6.13395 6.43080 6.48816 6.59714 6.64051 6.72823 6.95679 7.28387 7.41504 7.52365 7.66290 7.81610 7.89649 8.01086 8.14611 8.59653 9.22066 9.77593 11.25125 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.008129 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.469819 B = 3443.649455 C = 4130.875950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.507 5.507 14 C 0.023 3.977 15 C 0.118 3.882 16 C 0.038 3.962 17 C -0.185 4.185 18 C -0.202 4.202 19 C -0.025 4.025 20 N -0.559 5.559 21 H 0.408 0.592 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.257 0.743 28 H 0.012 0.988 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 1.100 13.901 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.090 0.910 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.125 4.125 15 C -0.011 4.011 16 C -0.075 4.075 17 C -0.210 4.210 18 C -0.227 4.227 19 C -0.156 4.156 20 N -0.154 5.154 21 H 0.244 0.756 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.030 0.970 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.986 0.928 13.681 14.591 hybrid contribution -0.139 -0.361 -0.105 0.401 sum -5.125 0.567 13.576 14.523 Atomic orbital electron populations 1.22540 0.99857 1.01264 1.00767 1.21970 0.89947 0.98621 0.91699 0.90972 1.19240 0.96493 0.95355 0.89781 1.21197 0.91748 1.32965 1.06969 0.91981 1.25005 0.98084 0.95868 0.95953 1.69963 1.35236 1.37075 1.12383 0.86616 0.86366 0.78470 0.76663 1.20917 1.21663 1.19920 1.62137 1.59023 1.01544 1.00289 1.22436 0.95744 0.91115 1.03213 1.20615 0.95143 0.98158 0.87150 1.20308 0.98230 0.92308 0.96669 1.20661 0.97191 1.03732 0.99377 1.20853 1.00618 0.99302 1.01930 1.21687 0.93203 1.03892 0.96830 1.42039 1.21142 1.26529 1.25710 0.75643 0.92388 0.92963 0.94168 0.96212 0.96253 0.93350 0.96962 0.89581 0.93048 0.95247 0.89165 0.84932 0.85231 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.50 37.16 0.32 -2.80 16 2 C 0.09 1.72 2.29 -67.71 -0.16 1.57 16 3 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.87 8.84 -34.44 -0.30 -14.17 16 6 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.47 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.51 -9.68 4.46 -236.34 -1.05 -10.73 16 14 C 0.02 0.42 8.55 60.06 0.51 0.93 16 15 C 0.12 1.86 4.94 -4.98 -0.02 1.83 16 16 C 0.04 0.58 5.88 -81.79 -0.48 0.10 16 17 C -0.18 -2.94 10.77 -39.78 -0.43 -3.37 16 18 C -0.20 -2.86 10.86 -39.78 -0.43 -3.29 16 19 C -0.03 -0.32 11.94 -16.75 -0.20 -0.52 16 20 N -0.56 -7.29 5.17 -9.12 -0.05 -7.34 16 21 H 0.41 4.34 8.79 -40.82 -0.36 3.98 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.87 6.48 -51.93 -0.34 0.54 16 24 H 0.04 0.59 6.75 -51.93 -0.35 0.24 16 25 H 0.02 0.53 6.09 -51.93 -0.32 0.21 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.01 0.19 6.51 -51.93 -0.34 -0.15 16 29 H 0.09 1.81 6.03 -51.93 -0.31 1.49 16 30 H 0.05 0.86 6.41 -51.93 -0.33 0.53 16 31 H 0.03 0.42 6.94 -51.93 -0.36 0.06 16 32 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 33 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 34 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 282.59 15.07 4.26 4.26 Total: -1.00 -31.29 282.59 -7.73 -39.03 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.19 Total: 1.86 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.41 Total: -17.77 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.36 Total: -44.81 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.29 -7.73 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.375 kcal (2) G-P(sol) polarization free energy of solvation -31.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds