Wall clock time and date at job start Mon Mar 30 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47085 * 2 1 4 4 C 1.53004 * 109.47261 * 239.99774 * 2 1 3 5 5 C 1.50695 * 109.47104 * 175.00422 * 4 2 1 6 6 H 1.08000 * 120.00085 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99900 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00162 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46858 * 89.99416 * 9 7 5 11 11 H 1.48494 * 109.47398 * 209.99843 * 9 7 5 12 12 H 1.48501 * 109.47068 * 329.99909 * 9 7 5 13 13 N 1.46900 * 109.46529 * 119.99784 * 2 1 3 14 14 C 1.46896 * 111.00209 * 58.95713 * 13 2 1 15 15 C 1.46893 * 111.00355 * 294.99763 * 13 2 1 16 16 C 1.50699 * 109.47638 * 190.00534 * 15 13 2 17 17 C 1.34854 * 125.89246 * 94.99677 * 16 15 13 18 18 C 1.40884 * 107.41513 * 179.74330 * 17 16 15 19 19 C 1.34850 * 107.42192 * 359.97438 * 18 17 16 20 20 N 1.36338 * 108.21433 * 359.97438 * 19 18 17 21 21 H 0.97003 * 125.63151 * 180.02562 * 20 19 18 22 22 H 1.09002 * 109.47020 * 59.99976 * 1 2 3 23 23 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47593 * 300.00607 * 1 2 3 25 25 H 1.09006 * 109.46351 * 295.00430 * 4 2 1 26 26 H 1.08998 * 109.47096 * 54.99716 * 4 2 1 27 27 H 0.96992 * 120.00405 * 179.97438 * 8 7 5 28 28 H 1.08997 * 109.47217 * 296.04109 * 14 13 2 29 29 H 1.08998 * 109.47263 * 56.03773 * 14 13 2 30 30 H 1.09003 * 109.47274 * 176.04285 * 14 13 2 31 31 H 1.09000 * 109.47022 * 69.99941 * 15 13 2 32 32 H 1.09005 * 109.47144 * 310.00323 * 15 13 2 33 33 H 1.07998 * 126.29032 * 359.76354 * 17 16 15 34 34 H 1.08004 * 126.28899 * 179.97438 * 18 17 16 35 35 H 1.08001 * 125.89235 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 3.5764 -1.8371 -3.2999 9 14 6.0920 -1.0605 -2.4372 10 1 6.7007 -2.2131 -1.7257 11 1 6.5290 -1.0679 -3.8564 12 1 6.5261 0.2047 -1.7922 13 7 2.0195 -0.6925 1.1995 14 6 1.5282 -2.0760 1.2460 15 6 1.6486 0.0392 2.4180 16 6 2.3677 -0.5570 3.6006 17 6 3.5335 -0.1205 4.1193 18 6 3.8458 -0.9516 5.2131 19 6 2.8589 -1.8641 5.3216 20 7 1.9483 -1.6263 4.3351 21 1 1.1365 -2.1344 4.1810 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 1.7516 -1.7716 -1.2055 26 1 1.6054 -0.2619 -2.1370 27 1 4.0606 -2.2432 -4.0357 28 1 0.4418 -2.0730 1.3348 29 1 1.8165 -2.5950 0.3319 30 1 1.9616 -2.5868 2.1060 31 1 0.5721 -0.0344 2.5725 32 1 1.9297 1.0871 2.3125 33 1 4.1197 0.7133 3.7620 34 1 4.7159 -0.8726 5.8480 35 1 2.7995 -2.6475 6.0627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:29 Heat of formation + Delta-G solvation = 28.069718 kcal Electronic energy + Delta-G solvation = -15357.897577 eV Core-core repulsion = 12969.887184 eV Total energy + Delta-G solvation = -2388.010393 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93373 -39.20527 -35.03376 -32.89813 -31.75151 -30.25458 -29.27562 -27.46304 -25.56308 -24.23652 -21.39473 -20.93275 -20.39068 -18.37684 -18.21709 -17.11961 -16.51162 -15.65690 -15.34386 -14.88514 -14.53957 -14.31011 -14.16541 -13.91170 -13.49665 -13.29849 -13.03225 -12.92163 -12.84713 -12.59857 -12.40087 -12.30507 -12.13618 -11.78174 -11.10151 -11.05134 -10.47269 -9.64853 -9.02749 -8.75762 -8.10291 -6.14467 1.41018 1.41641 1.42591 1.53369 2.18542 2.47573 2.56841 3.21188 3.38152 4.00368 4.23261 4.25190 4.39883 4.45084 4.50704 4.59476 4.62430 4.69781 4.80113 4.94011 4.97121 5.13121 5.20664 5.26285 5.42653 5.49741 5.53613 5.71243 5.90580 6.17684 6.29860 6.32124 6.41763 6.51931 6.87416 6.99755 7.51452 9.01628 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.026199 B = 0.008129 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.469819 B = 3443.649455 C = 4130.875950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.500 4.500 6 H 0.056 0.944 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.532 5.532 14 C 0.032 3.968 15 C 0.125 3.875 16 C 0.019 3.981 17 C -0.210 4.210 18 C -0.227 4.227 19 C -0.009 4.009 20 N -0.552 5.552 21 H 0.420 0.580 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.000 1.000 26 H -0.006 1.006 27 H 0.259 0.741 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 0.957 15.776 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 H 0.085 0.915 4 C -0.004 4.004 5 C -0.538 4.538 6 H 0.074 0.926 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.255 5.255 14 C -0.116 4.116 15 C -0.003 4.003 16 C -0.094 4.094 17 C -0.235 4.235 18 C -0.251 4.251 19 C -0.141 4.141 20 N -0.148 5.148 21 H 0.258 0.742 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.018 0.982 26 H 0.012 0.988 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.281 0.789 15.567 16.457 hybrid contribution -0.052 -0.330 -0.633 0.716 sum -5.332 0.458 14.934 15.864 Atomic orbital electron populations 1.22396 0.96941 1.01737 1.02266 1.21653 0.92226 0.97391 0.90162 0.91507 1.19105 0.95078 0.94576 0.91613 1.21511 0.93438 1.32314 1.06538 0.92611 1.25816 1.02700 0.95716 0.95766 1.70079 1.36988 1.38105 1.13046 0.85616 0.80919 0.78625 0.76878 1.20615 1.21011 1.19114 1.61993 1.60248 1.02180 1.01102 1.22287 0.97271 0.90397 1.01624 1.20558 0.96407 0.97704 0.85643 1.20222 0.98506 0.93549 0.97132 1.20873 0.97773 1.04302 1.00590 1.21138 1.02033 0.99837 1.02120 1.22283 0.91851 1.03542 0.96411 1.42056 1.21651 1.25835 1.25294 0.74155 0.92336 0.92948 0.91213 0.98187 0.98791 0.93276 0.94529 0.93423 0.91925 0.93077 0.89164 0.85792 0.83900 0.78810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 8.50 71.98 0.61 -4.95 16 2 C 0.09 3.75 2.29 44.92 0.10 3.86 16 3 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 4 C 0.03 1.74 4.27 29.85 0.13 1.86 16 5 C -0.50 -28.80 8.84 25.60 0.23 -28.58 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -58.17 13.29 21.45 0.28 -57.89 16 9 Si 0.95 46.49 29.54 68.60 2.03 48.51 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 N -0.53 -19.85 4.46 -901.64 -4.02 -23.86 16 14 C 0.03 1.13 8.55 127.69 1.09 2.23 16 15 C 0.12 3.69 4.94 85.56 0.42 4.12 16 16 C 0.02 0.56 5.88 41.08 0.24 0.80 16 17 C -0.21 -6.51 10.77 22.14 0.24 -6.27 16 18 C -0.23 -6.00 10.86 22.14 0.24 -5.76 16 19 C -0.01 -0.21 11.94 83.21 0.99 0.79 16 20 N -0.55 -12.83 5.17 -182.77 -0.94 -13.77 16 21 H 0.42 7.52 8.79 -92.71 -0.82 6.70 16 22 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.66 6.48 -2.39 -0.02 1.64 16 24 H 0.07 1.82 6.75 -2.39 -0.02 1.80 16 25 H 0.00 0.00 6.09 -2.38 -0.01 -0.02 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 28 H 0.04 1.08 6.51 -2.39 -0.02 1.07 16 29 H 0.05 2.03 6.03 -2.39 -0.01 2.01 16 30 H 0.06 2.01 6.41 -2.39 -0.02 1.99 16 31 H 0.05 1.29 6.94 -2.39 -0.02 1.28 16 32 H 0.09 2.64 8.00 -2.38 -0.02 2.62 16 33 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 34 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -67.84 282.59 2.36 -65.48 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.26 Total: 13.22 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 4.76 Total: -31.69 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -4.68 Total: -95.52 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -67.84 2.36 -65.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.549 kcal (2) G-P(sol) polarization free energy of solvation -67.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds