Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46642 * 2 1 4 4 N 1.30502 * 125.64556 * 270.03299 * 3 2 1 5 5 C 1.34132 * 109.25298 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.99084 * 180.02562 * 5 4 3 7 7 C 1.34670 * 108.02222 * 359.73250 * 5 4 3 8 8 N 1.35042 * 125.65282 * 90.00765 * 3 2 1 9 9 C 1.46496 * 126.39480 * 0.02562 * 8 3 2 10 10 H 1.09000 * 109.47651 * 0.02562 * 9 8 3 11 11 C 1.53008 * 109.46691 * 120.01032 * 9 8 3 12 12 C 1.52996 * 109.47491 * 240.00734 * 9 8 3 13 13 C 1.50702 * 109.47159 * 175.00205 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09003 * 109.47261 * 300.00345 * 1 2 3 22 22 H 1.09002 * 109.46879 * 60.00777 * 1 2 3 23 23 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47175 * 239.99442 * 2 1 3 25 25 H 1.08999 * 109.46509 * 119.99589 * 2 1 3 26 26 H 1.09003 * 109.47393 * 89.96795 * 6 5 4 27 27 H 1.09001 * 109.47232 * 209.97210 * 6 5 4 28 28 H 1.09000 * 109.46620 * 329.97534 * 6 5 4 29 29 H 1.07996 * 126.59618 * 180.28516 * 7 5 4 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 300.00008 * 11 9 8 32 32 H 1.08999 * 109.46998 * 60.00261 * 11 9 8 33 33 H 1.09004 * 109.47066 * 55.00408 * 12 9 8 34 34 H 1.08994 * 109.47405 * 295.00239 * 12 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1381 -1.0605 5 6 2.7136 3.3515 -0.6820 6 6 3.1103 4.4774 -1.6018 7 6 2.7212 3.3894 0.6642 8 7 2.2947 2.1629 1.0973 9 6 2.1449 1.7370 2.4909 10 1 1.7826 0.7093 2.5199 11 6 3.4993 1.8200 3.1979 12 6 1.1432 2.6513 3.1989 13 6 0.8962 2.1403 4.5950 14 1 1.4033 1.2524 4.9427 15 6 0.0275 2.8099 5.4306 16 7 -0.5897 3.8913 5.0073 17 14 -0.2728 2.1808 7.1636 18 1 0.5366 0.9572 7.3933 19 1 0.1198 3.2248 8.1441 20 1 -1.7132 1.8607 7.3314 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2367 5.0905 -1.8233 27 1 3.8713 5.0902 -1.1188 28 1 3.5095 4.0656 -2.5287 29 1 3.0104 4.2259 1.2831 30 1 3.3880 1.5027 4.2348 31 1 4.2130 1.1686 2.6935 32 1 3.8618 2.8476 3.1690 33 1 0.2049 2.6609 2.6442 34 1 1.5464 3.6628 3.2483 35 1 -1.2012 4.3622 5.5951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715132857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = 28.205854 kcal Electronic energy + Delta-G solvation = -15362.680624 eV Core-core repulsion = 12974.676135 eV Total energy + Delta-G solvation = -2388.004490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.62009 -35.70915 -33.63184 -32.73392 -30.78345 -29.56573 -27.20828 -26.28481 -24.05361 -23.10749 -20.97091 -19.74078 -18.74380 -16.69526 -15.67853 -15.08251 -14.56192 -14.36841 -13.90839 -13.39461 -13.15077 -12.89288 -12.66755 -12.45044 -12.12631 -11.94108 -11.70206 -11.47306 -11.25900 -11.08576 -10.97319 -10.81100 -10.63269 -10.24757 -9.95293 -9.49674 -9.25834 -8.73772 -8.53898 -7.64567 -6.17840 -4.22965 2.66158 3.20603 3.28487 3.31011 3.48626 3.56926 4.32011 4.76698 5.18005 5.19271 5.34308 5.47161 5.56092 5.68927 5.72020 5.78387 5.87408 5.92676 6.01530 6.06094 6.13656 6.22266 6.30341 6.48388 6.50894 6.54633 6.63797 7.01388 7.32739 7.39076 7.48595 7.72450 7.89358 8.14473 8.66853 8.81907 9.42249 10.93220 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.007569 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.920825 B = 3698.291563 C = 4024.837113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.197 3.803 4 N -0.499 5.499 5 C -0.024 4.024 6 C -0.058 4.058 7 C -0.040 4.040 8 N -0.432 5.432 9 C 0.124 3.876 10 H 0.090 0.910 11 C -0.146 4.146 12 C 0.023 3.977 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.165 0.835 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 -3.939 -6.860 9.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 C -0.065 4.065 4 N -0.219 5.219 5 C -0.153 4.153 6 C -0.116 4.116 7 C -0.176 4.176 8 N -0.112 5.112 9 C 0.023 3.977 10 H 0.108 0.892 11 C -0.203 4.203 12 C -0.014 4.014 13 C -0.563 4.563 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.183 0.817 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.309 -4.118 -7.437 10.023 hybrid contribution -0.203 0.188 1.942 1.962 sum 5.106 -3.929 -5.495 8.468 Atomic orbital electron populations 1.21746 0.94116 1.01764 1.02944 1.19864 0.96424 0.87834 1.03137 1.23030 1.05109 0.96595 0.81789 1.69992 1.19301 1.03938 1.28716 1.20547 1.08066 0.94878 0.91829 1.19898 1.00451 0.93869 0.97390 1.22316 1.09295 0.90360 0.95593 1.45817 1.46309 1.10872 1.08219 1.21956 0.98435 1.01095 0.76201 0.89177 1.22025 0.94910 1.01713 1.01693 1.19406 0.92812 0.94247 0.94973 1.21053 1.26310 1.11724 0.97242 0.92114 1.25005 0.95554 0.94822 0.98757 1.69980 1.28410 1.17817 1.36450 0.86482 0.78156 0.78896 0.84177 1.19599 1.20881 1.20861 0.91990 0.92267 0.92108 0.89542 0.90663 0.92064 0.91919 0.91920 0.81735 0.89750 0.94055 0.92557 0.95950 0.95778 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.89 37.16 0.37 -1.77 16 2 C -0.03 -0.50 6.08 -27.88 -0.17 -0.67 16 3 C 0.20 3.69 7.16 -155.42 -1.11 2.57 16 4 N -0.50 -9.81 11.25 -7.07 -0.08 -9.89 16 5 C -0.02 -0.43 7.09 -82.85 -0.59 -1.02 16 6 C -0.06 -0.82 10.42 36.01 0.38 -0.45 16 7 C -0.04 -0.76 10.61 -16.56 -0.18 -0.94 16 8 N -0.43 -8.37 2.61 -106.83 -0.28 -8.65 16 9 C 0.12 2.46 2.94 -67.93 -0.20 2.26 16 10 H 0.09 1.71 6.67 -51.93 -0.35 1.36 16 11 C -0.15 -2.57 9.06 37.16 0.34 -2.23 16 12 C 0.02 0.57 4.45 -27.88 -0.12 0.44 16 13 C -0.52 -13.69 8.41 -34.44 -0.29 -13.98 16 14 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 17 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 1.04 7.08 -51.93 -0.37 0.67 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 30 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -29.95 293.01 -7.54 -37.50 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.64 Total: 0.21 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.68 Total: -14.22 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.38 Total: -43.45 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.95 -7.54 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715132857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.701 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds