Wall clock time and date at job start Mon Mar 30 2020 02:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.46642 * 2 1 4 4 N 1.30502 * 125.64556 * 270.03299 * 3 2 1 5 5 C 1.34132 * 109.25298 * 179.97438 * 4 3 2 6 6 C 1.50700 * 125.99084 * 180.02562 * 5 4 3 7 7 C 1.34670 * 108.02222 * 359.73250 * 5 4 3 8 8 N 1.35042 * 125.65282 * 90.00765 * 3 2 1 9 9 C 1.46496 * 126.39480 * 0.02562 * 8 3 2 10 10 H 1.09000 * 109.47651 * 0.02562 * 9 8 3 11 11 C 1.53008 * 109.46691 * 120.01032 * 9 8 3 12 12 C 1.52996 * 109.47491 * 240.00734 * 9 8 3 13 13 C 1.50702 * 109.47159 * 175.00205 * 12 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 H 1.09003 * 109.47261 * 300.00345 * 1 2 3 22 22 H 1.09002 * 109.46879 * 60.00777 * 1 2 3 23 23 H 1.08999 * 109.47090 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47175 * 239.99442 * 2 1 3 25 25 H 1.08999 * 109.46509 * 119.99589 * 2 1 3 26 26 H 1.09003 * 109.47393 * 89.96795 * 6 5 4 27 27 H 1.09001 * 109.47232 * 209.97210 * 6 5 4 28 28 H 1.09000 * 109.46620 * 329.97534 * 6 5 4 29 29 H 1.07996 * 126.59618 * 180.28516 * 7 5 4 30 30 H 1.09004 * 109.46896 * 180.02562 * 11 9 8 31 31 H 1.09001 * 109.46930 * 300.00008 * 11 9 8 32 32 H 1.08999 * 109.46998 * 60.00261 * 11 9 8 33 33 H 1.09004 * 109.47066 * 55.00408 * 12 9 8 34 34 H 1.08994 * 109.47405 * 295.00239 * 12 9 8 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1381 -1.0605 5 6 2.7136 3.3515 -0.6820 6 6 3.1103 4.4774 -1.6018 7 6 2.7212 3.3894 0.6642 8 7 2.2947 2.1629 1.0973 9 6 2.1449 1.7370 2.4909 10 1 1.7826 0.7093 2.5199 11 6 3.4993 1.8200 3.1979 12 6 1.1432 2.6513 3.1989 13 6 0.8962 2.1403 4.5950 14 1 1.4033 1.2524 4.9427 15 6 0.0275 2.8099 5.4306 16 7 -0.5897 3.8913 5.0073 17 14 -0.2728 2.1808 7.1636 18 1 0.5366 0.9572 7.3933 19 1 0.1198 3.2248 8.1441 20 1 -1.7132 1.8607 7.3314 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.2367 5.0905 -1.8233 27 1 3.8713 5.0902 -1.1188 28 1 3.5095 4.0656 -2.5287 29 1 3.0104 4.2259 1.2831 30 1 3.3880 1.5027 4.2348 31 1 4.2130 1.1686 2.6935 32 1 3.8618 2.8476 3.1690 33 1 0.2049 2.6609 2.6442 34 1 1.5464 3.6628 3.2483 35 1 -1.2012 4.3622 5.5951 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715132857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:50 Heat of formation + Delta-G solvation = 12.190383 kcal Electronic energy + Delta-G solvation = -15363.375107 eV Core-core repulsion = 12974.676135 eV Total energy + Delta-G solvation = -2388.698973 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.06707 -37.36598 -34.97262 -34.58469 -32.25261 -31.00406 -29.01805 -27.59697 -25.80120 -24.54297 -22.53752 -21.20689 -20.21862 -18.62405 -17.29922 -16.72975 -16.24179 -15.73781 -15.30331 -14.91909 -14.54822 -14.44480 -14.13078 -13.88436 -13.58495 -13.29559 -13.15306 -12.88546 -12.79665 -12.74441 -12.43782 -12.34986 -12.10058 -11.91711 -11.67224 -11.39117 -10.84626 -10.63967 -10.28897 -9.07121 -8.25340 -6.37547 1.19725 1.40707 1.41947 1.54183 2.00225 2.14497 2.40087 3.09872 3.49107 3.80615 3.88888 4.17072 4.24644 4.34594 4.39519 4.41149 4.50153 4.66656 4.81787 4.91152 4.93602 4.93769 4.96883 5.08922 5.18702 5.22026 5.27152 5.33020 5.37045 5.66805 5.70047 5.95313 6.06559 6.42401 6.77312 7.21972 7.32786 8.87053 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.031106 B = 0.007569 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.920825 B = 3698.291563 C = 4024.837113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C 0.191 3.809 4 N -0.522 5.522 5 C -0.030 4.030 6 C -0.056 4.056 7 C -0.065 4.065 8 N -0.442 5.442 9 C 0.135 3.865 10 H 0.101 0.899 11 C -0.137 4.137 12 C 0.036 3.964 13 C -0.532 4.532 14 H 0.076 0.924 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.254 1.254 19 H -0.281 1.281 20 H -0.283 1.283 21 H 0.031 0.969 22 H 0.050 0.950 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.171 0.829 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.051 0.949 33 H -0.018 1.018 34 H -0.004 1.004 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 -5.472 -6.586 10.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.072 4.072 4 N -0.243 5.243 5 C -0.159 4.159 6 C -0.114 4.114 7 C -0.200 4.200 8 N -0.122 5.122 9 C 0.034 3.966 10 H 0.119 0.881 11 C -0.195 4.195 12 C -0.002 4.002 13 C -0.570 4.570 14 H 0.094 0.906 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.178 1.178 19 H -0.207 1.207 20 H -0.209 1.209 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.125 0.875 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.188 0.812 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.001 0.999 34 H 0.014 0.986 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.247 -5.654 -7.176 11.067 hybrid contribution -0.507 0.690 1.775 1.971 sum 5.739 -4.964 -5.401 9.314 Atomic orbital electron populations 1.21691 0.93939 1.03265 1.01000 1.20072 0.96424 0.85978 1.04863 1.23815 1.04100 0.97887 0.81350 1.70044 1.20299 1.04704 1.29213 1.21217 1.06909 0.95436 0.92312 1.20012 1.01341 0.92888 0.97136 1.22602 1.10408 0.90710 0.96237 1.45829 1.46952 1.11357 1.08091 1.21702 0.98368 1.00117 0.76457 0.88115 1.21940 0.93971 1.02070 1.01504 1.19164 0.92174 0.93982 0.94852 1.21477 1.25858 1.11890 0.97777 0.90586 1.25968 0.95404 0.94946 1.03254 1.70128 1.29463 1.19472 1.38166 0.85366 0.78016 0.78793 0.78699 1.17754 1.20720 1.20856 0.94936 0.93113 0.88875 0.87490 0.89168 0.91455 0.89800 0.91076 0.81216 0.89866 0.91608 0.93029 0.99940 0.98556 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.89 71.98 0.71 -3.21 16 2 C -0.03 -0.97 6.08 29.85 0.18 -0.79 16 3 C 0.19 6.99 7.16 138.13 0.99 7.98 16 4 N -0.52 -20.15 11.25 -176.28 -1.98 -22.13 16 5 C -0.03 -1.07 7.09 41.39 0.29 -0.78 16 6 C -0.06 -1.51 10.42 71.24 0.74 -0.77 16 7 C -0.07 -2.48 10.61 83.09 0.88 -1.60 16 8 N -0.44 -17.03 2.61 -491.91 -1.28 -18.31 16 9 C 0.14 5.29 2.94 44.99 0.13 5.42 16 10 H 0.10 3.70 6.67 -2.39 -0.02 3.69 16 11 C -0.14 -4.64 9.06 71.98 0.65 -3.99 16 12 C 0.04 1.81 4.45 29.85 0.13 1.94 16 13 C -0.53 -27.74 8.41 25.60 0.22 -27.52 16 14 H 0.08 3.66 7.06 -2.91 -0.02 3.64 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 17 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 18 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.09 2.26 7.08 -2.39 -0.02 2.24 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.17 6.02 8.06 -2.91 -0.02 6.00 16 30 H 0.08 2.83 6.95 -2.38 -0.02 2.81 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.77 7.96 -2.39 -0.02 1.75 16 33 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 34 H 0.00 -0.22 8.08 -2.39 -0.02 -0.23 16 35 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -64.82 293.01 5.48 -59.34 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.04 Total: 14.71 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 5.39 Total: -22.71 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -2.98 Total: -95.26 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -64.82 5.48 -59.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715132857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.531 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds