Wall clock time and date at job start Mon Mar 30 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46736 * 55.42794 * 3 2 1 5 5 C 1.46898 * 111.00201 * 294.29857 * 4 3 2 6 6 C 1.53245 * 109.33905 * 172.75044 * 5 4 3 7 7 H 1.08999 * 109.62470 * 173.53947 * 6 5 4 8 8 C 1.52995 * 109.62820 * 294.12091 * 6 5 4 9 9 N 1.47077 * 108.52067 * 53.83009 * 6 5 4 10 10 C 1.36941 * 120.88158 * 128.79133 * 9 6 5 11 11 H 1.08000 * 120.00049 * 206.28868 * 10 9 6 12 12 C 1.38816 * 119.99743 * 26.29273 * 10 9 6 13 13 N 1.31618 * 119.99894 * 17.39010 * 12 10 9 14 14 Si 1.86804 * 119.99905 * 197.39215 * 12 10 9 15 15 H 1.48497 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47141 * 119.99791 * 14 12 10 17 17 H 1.48499 * 109.46773 * 239.99804 * 14 12 10 18 18 C 1.47081 * 118.24078 * 308.81583 * 9 6 5 19 19 H 1.08999 * 109.78564 * 291.38455 * 18 9 6 20 20 C 1.53000 * 109.62798 * 170.89486 * 18 9 6 21 21 C 1.46900 * 110.99636 * 169.99916 * 4 3 2 22 22 H 4.40882 * 5.52251 * 179.97438 * 4 1 2 23 23 H 1.08994 * 109.47227 * 295.42894 * 3 2 1 24 24 H 1.08996 * 109.47143 * 175.42705 * 3 2 1 25 25 H 1.08999 * 109.49176 * 292.70949 * 5 4 3 26 26 H 1.08998 * 109.48830 * 52.79268 * 5 4 3 27 27 H 1.08991 * 109.47189 * 179.03022 * 8 6 5 28 28 H 1.09005 * 109.47044 * 299.03306 * 8 6 5 29 29 H 1.09007 * 109.47274 * 59.02932 * 8 6 5 30 30 H 0.96998 * 119.99868 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.47171 * 300.96771 * 20 18 9 32 32 H 1.08999 * 109.47192 * 60.97213 * 20 18 9 33 33 H 1.09008 * 109.46709 * 180.96826 * 20 18 9 34 34 H 1.09002 * 109.49311 * 307.21432 * 21 4 3 35 35 H 1.09003 * 109.49292 * 67.26471 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1360 -0.7850 -1.1404 5 6 2.7800 -2.2028 -0.9948 6 6 3.1461 -2.9526 -2.2802 7 1 2.9911 -4.0220 -2.1370 8 6 2.2735 -2.4525 -3.4331 9 7 4.5618 -2.6949 -2.5842 10 6 5.4262 -3.7272 -2.8345 11 1 6.4817 -3.6069 -2.6399 12 6 4.9457 -4.9281 -3.3382 13 7 3.7531 -4.9789 -3.8929 14 14 5.9915 -6.4721 -3.2288 15 1 7.2811 -6.1505 -2.5664 16 1 5.2717 -7.5025 -2.4381 17 1 6.2533 -6.9903 -4.5956 18 6 5.0248 -1.2991 -2.6120 19 1 4.5865 -0.7819 -3.4654 20 6 6.5507 -1.2658 -2.7190 21 6 4.5847 -0.6145 -1.3136 22 1 -1.0499 -0.0003 -0.0001 23 1 3.0096 -0.4404 0.9280 24 1 3.0089 1.0252 -0.0819 25 1 3.3279 -2.6309 -0.1554 26 1 1.7088 -2.2920 -0.8141 27 1 2.5477 -2.9751 -4.3494 28 1 1.2250 -2.6447 -3.2051 29 1 2.4260 -1.3814 -3.5662 30 1 3.4172 -5.8182 -4.2446 31 1 6.9861 -1.7896 -1.8681 32 1 6.8608 -1.7534 -3.6433 33 1 6.8922 -0.2306 -2.7220 34 1 4.8224 0.4481 -1.3641 35 1 5.1074 -1.0643 -0.4694 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878776276.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:05 Heat of formation + Delta-G solvation = 88.461399 kcal Electronic energy + Delta-G solvation = -15976.246523 eV Core-core repulsion = 13590.854909 eV Total energy + Delta-G solvation = -2385.391613 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.57304 -35.22550 -32.76845 -32.25920 -31.03846 -27.98740 -26.64666 -25.91859 -23.98120 -22.06166 -20.73105 -18.53582 -17.80552 -16.24118 -15.40640 -14.67053 -14.62835 -14.30940 -13.83500 -13.23510 -13.09423 -12.83167 -12.35782 -11.80919 -11.50182 -11.23203 -10.97742 -10.88920 -10.63492 -10.56745 -10.42474 -10.17039 -10.02151 -9.92154 -9.80127 -9.41504 -9.15842 -8.42840 -7.78300 -6.58841 -5.71552 -3.12206 2.98097 3.08744 3.39518 3.47930 3.49158 4.49436 4.54298 4.74926 5.34499 5.42559 5.58127 5.61966 5.85068 5.93604 6.10079 6.13493 6.20347 6.28537 6.35064 6.39027 6.46558 6.68115 6.89917 6.99203 7.07919 7.16883 7.28728 7.54731 7.58058 7.78255 7.86806 7.90252 8.00780 8.50518 9.29048 9.91788 10.49879 11.35929 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.034461 B = 0.009297 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.325811 B = 3010.867566 C = 3447.633709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C 0.156 3.844 4 N -0.527 5.527 5 C 0.041 3.959 6 C 0.198 3.802 7 H 0.095 0.905 8 C -0.133 4.133 9 N -0.586 5.586 10 C -0.247 4.247 11 H 0.071 0.929 12 C 0.000 4.000 13 N -0.898 5.898 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.292 1.292 18 C 0.171 3.829 19 H 0.034 0.966 20 C -0.137 4.137 21 C 0.049 3.951 22 H 0.214 0.786 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.032 0.968 30 H 0.251 0.749 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.062 0.938 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 8.056 6.051 10.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C 0.029 3.971 4 N -0.251 5.251 5 C -0.088 4.088 6 C 0.091 3.909 7 H 0.113 0.887 8 C -0.192 4.192 9 N -0.309 5.309 10 C -0.377 4.377 11 H 0.089 0.911 12 C -0.198 4.198 13 N -0.543 5.543 14 Si 0.728 3.272 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.219 1.219 18 C 0.064 3.936 19 H 0.051 0.949 20 C -0.195 4.195 21 C -0.080 4.080 22 H 0.231 0.769 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.882 8.073 5.550 9.976 hybrid contribution 0.542 -1.148 0.779 1.490 sum -1.340 6.925 6.329 9.476 Atomic orbital electron populations 1.24762 0.95783 1.01610 1.01371 1.22989 0.94309 0.99592 0.99488 1.19068 0.85028 0.99356 0.93657 1.61945 1.14442 1.10328 1.38422 1.22899 0.98932 0.86584 1.00343 1.20406 0.83207 0.98373 0.88870 0.88696 1.21933 0.96379 0.99254 1.01681 1.44310 1.05928 0.99601 1.81030 1.19244 0.91085 0.91362 1.35999 0.91095 1.24998 0.97233 0.99158 0.98424 1.70034 1.18474 1.24940 1.40827 0.86295 0.79769 0.83931 0.77203 1.20469 1.21789 1.21900 1.20455 0.92676 0.87185 0.93251 0.94861 1.21804 0.96058 0.99144 1.02534 1.22702 0.86298 0.99309 0.99729 0.76912 0.93267 0.89218 0.95797 0.92076 0.90914 0.96161 0.94845 0.93890 0.92918 0.91819 0.94202 0.91979 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.03 19.25 29.55 0.57 -2.46 16 2 C -0.16 -2.56 12.32 -37.12 -0.46 -3.02 16 3 C 0.16 2.38 5.46 -6.61 -0.04 2.35 16 4 N -0.53 -9.75 4.09 -237.83 -0.97 -10.72 16 5 C 0.04 0.85 4.85 -3.70 -0.02 0.83 16 6 C 0.20 4.75 2.35 -67.49 -0.16 4.59 16 7 H 0.10 2.57 6.11 -51.93 -0.32 2.25 16 8 C -0.13 -3.14 8.96 37.16 0.33 -2.81 16 9 N -0.59 -14.40 2.73 -157.00 -0.43 -14.83 16 10 C -0.25 -6.59 8.73 -15.06 -0.13 -6.72 16 11 H 0.07 1.85 6.15 -52.49 -0.32 1.53 16 12 C 0.00 0.00 4.93 -17.43 -0.09 -0.08 16 13 N -0.90 -25.37 9.80 55.49 0.54 -24.82 16 14 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 C 0.17 3.59 3.25 -67.49 -0.22 3.37 16 19 H 0.03 0.75 7.64 -51.93 -0.40 0.35 16 20 C -0.14 -2.56 7.93 37.16 0.29 -2.26 16 21 C 0.05 0.88 4.91 -3.70 -0.02 0.86 16 22 H 0.21 2.15 7.80 -54.10 -0.42 1.73 16 23 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 24 H 0.09 1.19 7.97 -51.93 -0.41 0.77 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 1.22 7.07 -51.93 -0.37 0.85 16 27 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.76 7.08 -51.93 -0.37 0.40 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.05 0.99 7.54 -51.93 -0.39 0.60 16 32 H 0.06 1.27 7.57 -51.93 -0.39 0.88 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 279.34 15.07 4.21 4.21 Total: -1.00 -28.78 279.34 -7.02 -35.80 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.41 Total: -0.80 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.86 Total: -50.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.78 -7.02 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878776276.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.261 kcal (2) G-P(sol) polarization free energy of solvation -28.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds