Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34947 * 126.03728 * 2 1 4 4 C 1.35317 * 107.74923 * 180.25923 * 3 2 1 5 5 C 1.50694 * 126.04430 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47485 * 268.77395 * 5 4 3 7 7 H 1.07994 * 119.99504 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00137 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00113 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99913 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47479 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46969 * 120.00309 * 10 8 6 13 13 H 1.48500 * 109.47521 * 240.00120 * 10 8 6 14 14 C 1.39873 * 107.91841 * 0.02562 * 4 3 2 15 15 C 1.50701 * 125.90244 * 180.02562 * 14 4 3 16 16 C 1.52994 * 109.47281 * 185.93307 * 15 14 4 17 17 C 1.53003 * 109.46788 * 305.93503 * 15 14 4 18 18 C 1.53001 * 109.47021 * 65.93145 * 15 14 4 19 19 N 1.30845 * 108.20340 * 359.97438 * 14 4 3 20 20 H 1.09000 * 109.47153 * 269.71550 * 1 2 3 21 21 H 1.09000 * 109.46761 * 29.71387 * 1 2 3 22 22 H 1.08999 * 109.46915 * 149.71480 * 1 2 3 23 23 H 1.08004 * 126.12869 * 0.26278 * 3 2 1 24 24 H 1.09005 * 109.47087 * 28.77865 * 5 4 3 25 25 H 1.08999 * 109.47583 * 148.77196 * 5 4 3 26 26 H 0.96995 * 119.99998 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.47164 * 60.00200 * 16 15 14 28 28 H 1.09001 * 109.47173 * 179.97438 * 16 15 14 29 29 H 1.08997 * 109.47170 * 299.99706 * 16 15 14 30 30 H 1.09003 * 109.47173 * 60.00181 * 17 15 14 31 31 H 1.09001 * 109.46589 * 179.97438 * 17 15 14 32 32 H 1.08991 * 109.46929 * 299.99552 * 17 15 14 33 33 H 1.09004 * 109.47125 * 64.02254 * 18 15 14 34 34 H 1.09000 * 109.47078 * 184.02449 * 18 15 14 35 35 H 1.08997 * 109.47481 * 304.02704 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 -0.0058 5 6 4.7680 1.5453 -0.0074 6 6 5.1889 1.8179 -1.4285 7 1 4.6259 1.3973 -2.2485 8 6 6.2921 2.6052 -1.6818 9 7 6.9774 3.1177 -0.6833 10 14 6.8142 2.9425 -3.4433 11 1 5.8846 2.2553 -4.3755 12 1 6.7790 4.4050 -3.6986 13 1 8.1937 2.4359 -3.6565 14 6 3.5347 -0.7321 -0.0101 15 6 4.7497 -1.6236 -0.0166 16 6 4.3116 -3.0816 -0.1688 17 6 5.6581 -1.2392 -1.1862 18 6 5.5129 -1.4551 1.2987 19 7 2.2891 -1.1328 -0.0064 20 1 -0.3633 -0.0051 1.0276 21 1 -0.3633 0.8926 -0.5094 22 1 -0.3633 -0.8874 -0.5183 23 1 1.9282 2.1194 0.0040 24 1 4.5397 2.4874 0.4911 25 1 5.5775 1.0417 0.5209 26 1 7.7537 3.6713 -0.8615 27 1 3.7679 -3.2016 -1.1059 28 1 5.1904 -3.7264 -0.1740 29 1 3.6645 -3.3554 0.6644 30 1 5.9702 -0.2005 -1.0777 31 1 6.5370 -1.8838 -1.1906 32 1 5.1143 -1.3593 -2.1232 33 1 4.8907 -1.7963 2.1261 34 1 6.4288 -2.0451 1.2654 35 1 5.7629 -0.4039 1.4417 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657370.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = 57.191098 kcal Electronic energy + Delta-G solvation = -15714.271063 eV Core-core repulsion = 13327.523468 eV Total energy + Delta-G solvation = -2386.747595 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.55833 -36.29356 -33.35696 -31.98579 -30.45900 -27.45458 -26.65150 -26.29898 -25.47376 -22.71118 -20.98998 -19.46089 -17.72189 -16.23819 -15.79760 -14.83009 -14.42273 -14.28200 -13.61243 -13.47887 -12.83325 -12.51145 -12.33550 -12.09775 -11.66791 -11.55539 -11.38191 -11.35164 -10.92886 -10.72713 -10.71786 -10.37083 -10.32428 -10.24285 -9.56006 -9.28144 -9.24614 -8.44246 -8.32495 -7.30262 -5.95890 -3.96484 2.64137 3.18058 3.32496 3.40820 3.45217 3.73884 4.51077 4.97064 5.32334 5.36124 5.40212 5.48926 5.58651 5.66174 5.70954 5.95400 6.12562 6.28062 6.33425 6.48429 6.51569 6.58380 6.70536 6.74500 6.79365 7.00328 7.03795 7.47683 7.57117 7.72161 7.81479 7.92582 8.02570 8.47858 8.54686 9.07917 9.64415 11.12675 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.010171 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.611611 B = 2752.305939 C = 3323.824125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.396 5.396 3 C 0.023 3.977 4 C -0.175 4.175 5 C 0.081 3.919 6 C -0.497 4.497 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.284 1.284 14 C 0.089 3.911 15 C 0.021 3.979 16 C -0.132 4.132 17 C -0.157 4.157 18 C -0.140 4.140 19 N -0.313 5.313 20 H 0.062 0.938 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.163 0.837 24 H 0.020 0.980 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -6.600 2.007 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.181 5.181 3 C -0.120 4.120 4 C -0.186 4.186 5 C 0.043 3.957 6 C -0.535 4.535 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.077 4.077 15 C 0.019 3.981 16 C -0.189 4.189 17 C -0.214 4.214 18 C -0.198 4.198 19 N -0.135 5.135 20 H 0.081 0.919 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.180 0.820 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.265 -7.466 2.042 11.324 hybrid contribution 0.577 1.071 -1.058 1.612 sum -7.688 -6.394 0.984 10.048 Atomic orbital electron populations 1.21577 0.75822 1.03398 1.02125 1.48133 1.05488 1.04130 1.60306 1.22205 0.91145 0.92546 1.06083 1.20749 0.95946 0.93436 1.08462 1.17804 0.88366 0.92480 0.97035 1.21129 1.10914 1.29386 0.92081 0.92696 1.24979 0.96699 0.96031 0.96642 1.69958 1.18862 1.34171 1.30365 0.86633 0.78544 0.77911 0.85582 1.19794 1.21184 1.20993 1.22085 0.92234 0.93970 0.99412 1.18849 0.90166 0.92041 0.97022 1.21777 1.00229 0.95253 1.01659 1.22254 0.97234 1.06247 0.95673 1.21925 0.98944 1.03502 0.95402 1.77070 1.01493 1.08045 1.26908 0.91943 0.90332 0.90332 0.81989 0.96213 0.94698 0.93073 0.92976 0.93116 0.93001 0.86689 0.93802 0.93732 0.93606 0.92619 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.40 11.47 59.85 0.69 2.09 16 2 N -0.40 -7.24 4.01 -68.16 -0.27 -7.52 16 3 C 0.02 0.45 11.40 -17.22 -0.20 0.25 16 4 C -0.18 -3.93 5.09 -105.05 -0.54 -4.47 16 5 C 0.08 2.04 4.49 -29.04 -0.13 1.90 16 6 C -0.50 -13.38 6.73 -34.44 -0.23 -13.61 16 7 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 10 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.09 1.89 5.61 -82.40 -0.46 1.42 16 15 C 0.02 0.40 0.77 -155.66 -0.12 0.28 16 16 C -0.13 -2.16 7.96 37.15 0.30 -1.87 16 17 C -0.16 -3.13 8.11 37.16 0.30 -2.83 16 18 C -0.14 -2.46 8.38 37.16 0.31 -2.15 16 19 N -0.31 -6.41 11.87 33.67 0.40 -6.01 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.16 2.80 8.06 -52.48 -0.42 2.38 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.04 0.91 4.99 -51.93 -0.26 0.65 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.11 2.68 3.91 -51.93 -0.20 2.48 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.47 5.59 -51.93 -0.29 1.18 16 LS Contribution 283.68 15.07 4.27 4.27 Total: -1.00 -30.46 283.68 -5.43 -35.89 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.37 Total: -0.44 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.18 Total: -17.51 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.86 Total: -38.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.46 -5.43 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657370.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.078 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds