Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40085 * 126.03931 * 2 1 4 4 C 1.30839 * 108.20389 * 180.16659 * 3 2 1 5 5 C 1.50698 * 125.89481 * 179.85006 * 4 3 2 6 6 C 1.53006 * 109.47184 * 254.69278 * 5 4 3 7 7 C 1.52999 * 109.46824 * 134.70031 * 5 4 3 8 8 C 1.52997 * 109.47342 * 14.69502 * 5 4 3 9 9 C 1.39875 * 108.20226 * 359.59101 * 4 3 2 10 10 C 1.34949 * 126.03393 * 179.70752 * 2 1 3 11 11 C 1.50698 * 126.12823 * 0.04088 * 10 2 1 12 12 C 1.50704 * 109.46851 * 264.97770 * 11 10 2 13 13 H 1.07999 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99609 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00390 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99692 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47090 * 60.00355 * 16 14 12 18 18 H 1.48502 * 109.46871 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46969 * 299.99938 * 16 14 12 20 20 H 1.09008 * 109.47145 * 270.28990 * 1 2 3 21 21 H 1.09002 * 109.47489 * 30.28692 * 1 2 3 22 22 H 1.09000 * 109.47384 * 150.29097 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 24 24 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 25 25 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 26 26 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 28 28 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 29 29 H 1.09001 * 109.47375 * 299.99730 * 8 5 4 30 30 H 1.09002 * 109.46777 * 60.00285 * 8 5 4 31 31 H 1.09000 * 109.47140 * 179.97438 * 8 5 4 32 32 H 1.07991 * 126.03748 * 180.23644 * 9 4 3 33 33 H 1.08998 * 109.47217 * 24.98144 * 11 10 2 34 34 H 1.08997 * 109.46989 * 144.97814 * 11 10 2 35 35 H 0.96999 * 120.00391 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7320 -0.0036 5 6 4.7496 1.6235 -0.0081 6 6 5.3817 1.6171 -1.4015 7 6 5.7642 1.1079 1.0144 8 6 4.3366 3.0505 0.3580 9 6 3.5436 -0.6667 0.0035 10 6 2.2588 -1.0913 0.0056 11 6 1.7972 -2.5258 0.0120 12 6 1.7609 -3.0354 1.4298 13 1 2.0435 -2.3854 2.2447 14 6 1.3660 -4.3312 1.6867 15 7 1.0215 -5.1226 0.6944 16 14 1.3204 -4.9627 3.4442 17 1 0.3801 -4.1361 4.2428 18 1 0.8656 -6.3763 3.4505 19 1 2.6797 -4.8778 4.0361 20 1 -0.3634 0.0052 1.0277 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 5.6760 0.6005 -1.6623 24 1 4.6589 1.9844 -2.1301 25 1 6.2608 2.2616 -1.4046 26 1 6.6433 1.7525 1.0108 27 1 5.3139 1.1125 2.0070 28 1 6.0585 0.0914 0.7536 29 1 3.6138 3.4178 -0.3706 30 1 3.8864 3.0550 1.3506 31 1 5.2155 3.6952 0.3551 32 1 4.4210 -1.2964 0.0063 33 1 0.7994 -2.5884 -0.4223 34 1 2.4874 -3.1322 -0.5745 35 1 0.7440 -6.0344 0.8751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535750957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = 47.303093 kcal Electronic energy + Delta-G solvation = -15253.573337 eV Core-core repulsion = 12866.396965 eV Total energy + Delta-G solvation = -2387.176372 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53403 -36.57708 -33.38641 -31.87326 -30.64413 -27.54390 -27.01561 -26.43749 -25.79793 -23.10869 -21.44190 -19.09340 -17.61498 -16.46356 -15.78689 -14.69065 -14.52897 -14.37980 -13.81116 -13.72248 -13.16867 -12.46892 -12.36592 -12.17387 -11.90584 -11.79519 -11.60623 -11.42560 -11.35353 -10.99362 -10.81491 -10.67824 -10.65370 -10.58458 -9.88478 -9.65226 -9.56369 -8.51444 -8.21887 -7.55762 -6.13754 -4.18208 2.77414 3.27441 3.30617 3.31758 3.35621 3.63803 4.38169 4.90715 5.08344 5.21561 5.27219 5.39429 5.61513 5.76432 5.79590 5.82800 5.98883 5.99950 6.02887 6.09305 6.11653 6.22437 6.29807 6.39779 6.56230 6.56950 6.76896 6.84402 7.34273 7.49815 7.53171 7.81693 7.90338 8.20998 8.59722 8.85650 9.46398 10.96065 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.007246 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.430343 B = 3863.199910 C = 4176.638346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.381 5.381 3 N -0.324 5.324 4 C 0.080 3.920 5 C 0.016 3.984 6 C -0.133 4.133 7 C -0.135 4.135 8 C -0.132 4.132 9 C -0.293 4.293 10 C 0.140 3.860 11 C 0.072 3.928 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.029 0.971 34 H 0.045 0.955 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 10.777 -1.990 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.162 5.162 3 N -0.146 5.146 4 C -0.086 4.086 5 C 0.014 3.986 6 C -0.192 4.192 7 C -0.193 4.193 8 C -0.189 4.189 9 C -0.321 4.321 10 C 0.013 3.987 11 C 0.034 3.966 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.200 1.200 20 H 0.086 0.914 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.685 11.600 -2.035 12.340 hybrid contribution 0.304 -1.251 1.009 1.636 sum 3.989 10.348 -1.026 11.138 Atomic orbital electron populations 1.21650 0.75320 1.03261 1.02890 1.48285 1.05981 1.03626 1.58333 1.77045 1.01035 1.08456 1.28018 1.21915 0.92637 0.93740 1.00303 1.18879 0.90357 0.93269 0.96130 1.21817 0.99877 1.02097 0.95362 1.21828 0.97548 1.01337 0.98608 1.21745 1.00568 0.94668 1.01946 1.20863 0.96652 0.93469 1.21159 1.22067 0.90476 0.92013 0.94166 1.18051 0.97239 0.82790 0.98533 1.20927 1.45681 0.97162 0.91506 0.92432 1.24975 0.94984 0.96624 0.97457 1.69931 1.44763 1.07368 1.31102 0.86554 0.78684 0.77755 0.84478 1.20198 1.21107 1.20014 0.91395 0.90723 0.89428 0.92160 0.92779 0.92495 0.92592 0.92551 0.91936 0.92311 0.92705 0.93027 0.84680 0.95250 0.93662 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.90 11.27 59.85 0.67 2.58 16 2 N -0.38 -8.08 4.01 -63.88 -0.26 -8.34 16 3 N -0.32 -6.71 11.89 33.67 0.40 -6.31 16 4 C 0.08 1.55 5.66 -82.40 -0.47 1.08 16 5 C 0.02 0.24 0.96 -155.66 -0.15 0.09 16 6 C -0.13 -1.74 8.46 37.16 0.31 -1.43 16 7 C -0.14 -1.84 8.20 37.16 0.30 -1.53 16 8 C -0.13 -1.80 8.03 37.16 0.30 -1.51 16 9 C -0.29 -6.26 10.01 -40.01 -0.40 -6.66 16 10 C 0.14 3.22 6.12 -82.26 -0.50 2.72 16 11 C 0.07 1.84 5.26 -29.03 -0.15 1.69 16 12 C -0.51 -14.19 9.09 -34.44 -0.31 -14.51 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.09 1.46 6.97 -51.93 -0.36 1.10 16 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.86 7.53 -51.93 -0.39 0.47 16 29 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.14 2.75 7.71 -52.49 -0.40 2.35 16 33 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -30.29 293.28 -5.92 -36.21 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.71 Total: -1.44 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.49 Total: -15.88 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.88 Total: -39.52 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.29 -5.92 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535750957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.513 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds