Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40085 * 126.03931 * 2 1 4 4 C 1.30839 * 108.20389 * 180.16659 * 3 2 1 5 5 C 1.50698 * 125.89481 * 179.85006 * 4 3 2 6 6 C 1.53006 * 109.47184 * 254.69278 * 5 4 3 7 7 C 1.52999 * 109.46824 * 134.70031 * 5 4 3 8 8 C 1.52997 * 109.47342 * 14.69502 * 5 4 3 9 9 C 1.39875 * 108.20226 * 359.59101 * 4 3 2 10 10 C 1.34949 * 126.03393 * 179.70752 * 2 1 3 11 11 C 1.50698 * 126.12823 * 0.04088 * 10 2 1 12 12 C 1.50704 * 109.46851 * 264.97770 * 11 10 2 13 13 H 1.07999 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99609 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00390 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99692 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47090 * 60.00355 * 16 14 12 18 18 H 1.48502 * 109.46871 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46969 * 299.99938 * 16 14 12 20 20 H 1.09008 * 109.47145 * 270.28990 * 1 2 3 21 21 H 1.09002 * 109.47489 * 30.28692 * 1 2 3 22 22 H 1.09000 * 109.47384 * 150.29097 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 24 24 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 25 25 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 26 26 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 27 27 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 28 28 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 29 29 H 1.09001 * 109.47375 * 299.99730 * 8 5 4 30 30 H 1.09002 * 109.46777 * 60.00285 * 8 5 4 31 31 H 1.09000 * 109.47140 * 179.97438 * 8 5 4 32 32 H 1.07991 * 126.03748 * 180.23644 * 9 4 3 33 33 H 1.08998 * 109.47217 * 24.98144 * 11 10 2 34 34 H 1.08997 * 109.46989 * 144.97814 * 11 10 2 35 35 H 0.96999 * 120.00391 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7320 -0.0036 5 6 4.7496 1.6235 -0.0081 6 6 5.3817 1.6171 -1.4015 7 6 5.7642 1.1079 1.0144 8 6 4.3366 3.0505 0.3580 9 6 3.5436 -0.6667 0.0035 10 6 2.2588 -1.0913 0.0056 11 6 1.7972 -2.5258 0.0120 12 6 1.7609 -3.0354 1.4298 13 1 2.0435 -2.3854 2.2447 14 6 1.3660 -4.3312 1.6867 15 7 1.0215 -5.1226 0.6944 16 14 1.3204 -4.9627 3.4442 17 1 0.3801 -4.1361 4.2428 18 1 0.8656 -6.3763 3.4505 19 1 2.6797 -4.8778 4.0361 20 1 -0.3634 0.0052 1.0277 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 5.6760 0.6005 -1.6623 24 1 4.6589 1.9844 -2.1301 25 1 6.2608 2.2616 -1.4046 26 1 6.6433 1.7525 1.0108 27 1 5.3139 1.1125 2.0070 28 1 6.0585 0.0914 0.7536 29 1 3.6138 3.4178 -0.3706 30 1 3.8864 3.0550 1.3506 31 1 5.2155 3.6952 0.3551 32 1 4.4210 -1.2964 0.0063 33 1 0.7994 -2.5884 -0.4223 34 1 2.4874 -3.1322 -0.5745 35 1 0.7440 -6.0344 0.8751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535750957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = 30.100399 kcal Electronic energy + Delta-G solvation = -15254.319301 eV Core-core repulsion = 12866.396965 eV Total energy + Delta-G solvation = -2387.922336 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 222.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.14287 -37.82136 -35.44375 -33.37621 -32.53078 -29.14838 -28.05145 -27.88151 -27.23496 -25.14217 -22.82747 -20.74941 -19.03472 -18.59231 -17.43974 -16.45934 -16.24198 -15.66238 -15.06322 -14.93552 -14.66140 -14.38024 -14.09008 -13.50867 -13.32725 -13.24016 -12.98500 -12.85161 -12.72858 -12.58229 -12.50019 -12.19449 -11.86853 -11.83965 -11.68074 -11.62709 -11.23550 -10.64226 -9.84682 -9.25758 -8.25906 -6.39058 1.10132 1.39629 1.40998 1.49778 1.78049 1.99583 2.39300 3.06305 3.58031 3.86257 4.12996 4.15581 4.23370 4.40000 4.47285 4.62431 4.66867 4.82281 4.85804 4.93895 4.96499 4.99311 5.07035 5.08201 5.22015 5.23823 5.28805 5.47374 5.50444 5.65208 5.70496 5.94323 6.01578 6.31014 6.69472 6.96278 7.29901 8.83500 Molecular weight = 222.14amu Principal moments of inertia in cm(-1) A = 0.033791 B = 0.007246 C = 0.006702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.430343 B = 3863.199910 C = 4176.638346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.388 5.388 3 N -0.331 5.331 4 C 0.084 3.916 5 C 0.011 3.989 6 C -0.129 4.129 7 C -0.133 4.133 8 C -0.126 4.126 9 C -0.301 4.301 10 C 0.114 3.886 11 C 0.085 3.915 12 C -0.531 4.531 13 H 0.048 0.952 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.963 3.037 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.270 1.270 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 12.028 -1.288 13.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.170 5.170 3 N -0.153 5.153 4 C -0.082 4.082 5 C 0.009 3.991 6 C -0.187 4.187 7 C -0.191 4.191 8 C -0.184 4.184 9 C -0.330 4.330 10 C -0.014 4.014 11 C 0.047 3.953 12 C -0.570 4.570 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.562 5.562 16 Si 0.787 3.213 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.195 1.195 20 H 0.090 0.910 21 H 0.121 0.879 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.655 12.862 -1.339 13.743 hybrid contribution 0.009 -1.607 0.749 1.773 sum 4.664 11.254 -0.590 12.197 Atomic orbital electron populations 1.21886 0.73565 1.04619 1.03591 1.48583 1.07197 1.03123 1.58103 1.77027 1.01642 1.08319 1.28276 1.22620 0.93671 0.93484 0.98435 1.19160 0.88886 0.93201 0.97902 1.21798 1.00768 1.02516 0.93629 1.21826 0.98240 1.01741 0.97243 1.21708 1.01721 0.94180 1.00762 1.21070 0.96217 0.94815 1.20862 1.21793 0.91683 0.91474 0.96470 1.17728 0.96002 0.84351 0.97257 1.21126 1.46084 0.97578 0.92163 0.93394 1.25784 0.94292 0.96657 1.01632 1.70031 1.45194 1.07785 1.33193 0.85534 0.78889 0.77478 0.79386 1.19501 1.20147 1.19506 0.90996 0.87866 0.89590 0.92796 0.93526 0.89183 0.89190 0.93901 0.92645 0.93192 0.94021 0.89714 0.84419 0.96393 0.95842 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 11.27 127.77 1.44 5.00 16 2 N -0.39 -16.56 4.01 -356.03 -1.43 -17.98 16 3 N -0.33 -13.54 11.89 -47.38 -0.56 -14.11 16 4 C 0.08 3.21 5.66 43.10 0.24 3.45 16 5 C 0.01 0.30 0.96 -52.93 -0.05 0.24 16 6 C -0.13 -3.04 8.46 71.98 0.61 -2.43 16 7 C -0.13 -3.30 8.20 71.98 0.59 -2.71 16 8 C -0.13 -3.13 8.03 71.98 0.58 -2.56 16 9 C -0.30 -13.00 10.01 21.99 0.22 -12.77 16 10 C 0.11 5.34 6.12 41.40 0.25 5.59 16 11 C 0.09 4.49 5.26 29.10 0.15 4.64 16 12 C -0.53 -29.89 9.09 25.60 0.23 -29.66 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C 0.02 0.88 5.46 84.65 0.46 1.34 16 15 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 16 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 21 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 22 H 0.09 2.93 6.97 -2.39 -0.02 2.91 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.45 7.53 -2.39 -0.02 1.43 16 29 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.14 5.71 7.71 -2.92 -0.02 5.69 16 33 H 0.02 0.96 6.95 -2.39 -0.02 0.95 16 34 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -64.76 293.28 6.09 -58.67 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.04 Total: 11.08 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 4.73 Total: -29.87 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -1.71 Total: -85.32 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.76 6.09 -58.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535750957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.772 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds